Metabolism Flashcards

(75 cards)

1
Q

What is the difference between delta G and delta G0’

A

delta G0’ is measured in the laboratory under the standard conditions: 1 atm,1M, etc.
delta G is measured in the normal conditions, how it happens in the body

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2
Q

What does delta G<0 and delta G>0 mean

A

delta G<0 means that the reaction is exergonic ( spontaneous) and delta G>0 means that the reaction is endergonic( nonspontaneous)

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3
Q

On what condition does it depend that delta G larger/equal/the same as delta G0’

A

On the concentration of the reactants and products

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4
Q

What is done to make an unfavorable reaction favorable?

A

1.a->b delta G>0
B->C delta G<0
A->C delta G is negative-> favorable
Drive the unfavorable reaction with the favorable reaction

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5
Q

Why ATP is a cellular currency for energy?

A

Because it has four negative charges in three phosphates together that repel each other, we want to get rid of that repulsion.

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6
Q

How ATP helps the endergonic reaction become favorable

A

energy is released during ATP hydrolysis and it is transferred to a substrate by phosphorylation

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7
Q

How you add K eq and delta G together for two reactions

A

For K eq you multiply

For delta G you add

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8
Q

What is reduction oxidation reaction?

A

A chemical reactions that involve electron transfer . When electrons shift their position in covalent bonds

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9
Q

What is OIL REG

A

Oxidation is loss. When the atom or molecule loses an electron, it becomes oxidized
Reduction is gain. when the atom or molecule gains an electron, it is reduced

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10
Q

What happens in photosynthesis with the energy storage

A

Plants harvest energy from the sunlight and store in the bonds of carbohydrates

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11
Q

What bond has more energy C-O or C-H

A

C-O are held more tightly and have low potential energy

C-H and C-C - the electrons are shared more equally and have higher potential energy

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12
Q

Why do fatty acids yield more energy than carbohydrates or protein?

A

Because FA have more C-C and C-H bonds

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13
Q

What is another way to understand redox reactions through electron exchange and protons

A

Electrons are transferred from an electron donor to an electron acceptor
Electrons are usually accompanied by a proton (H+)
So reduction often adds Hs and oxidation removes Hs

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14
Q

What is E’0

A

Reduction potential determines flow of electrons measurement of the standard reduction potential of a redox pair

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15
Q

The more negative is E’o , more___

A

More willingly to give off electrons, the more positive, a better electron acceptor

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16
Q

What is the last acceptor in the electron transfer chain and why

A

Oxygen , because it the best electron acceptor

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17
Q

The reaction malate+NAD->oxaloacetate +NADH+H is unfavorable. How this reaction is favorable in our body

A

NADH is usually much lower than the concentration of NAD+
Oxaloacetate is removed very quickly
So this two conditions favor the forward reaction

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18
Q

The general reaction for oxidizing glucose

A

C6H12O6+6O2->6CO2+6H2O+ heat and light

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19
Q

What are five steps in cellular respiration

A
  1. Glycolysis
  2. Pyruvate Processing(pyruvate dehydrogenation)
  3. Citric Acid Cycle
  4. Electron transport chain
  5. Oxidative phosphorylation
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20
Q

What is cellular respiration

A

Any set of reactions that uses electrons from high-energy molecule to make ATP

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21
Q

Why glycolysis is important

A

Glycolysis generates only 2 ATP, but it generates NADH, which is an important electron transfer molecule

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22
Q

What is the yield and molecules used in the glycolysis

A

2 ATP used->4 ATP generated ( 2 per one pyruvate)-> TOTAL: 2 ATP
2 NAD+ used-> 2 NADH produced
4 ADP used->2 ADP produced

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23
Q

Two steps in glycolysis

A

1) The preparatory phase or the investment phase

2) The payoff phase

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24
Q

What does kinase do

A

that means that the phospahte group is involved

Usually addition of the phosphate

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25
Free phosphate is from organic/inorganic sources and comes from
Inorganic | Comes from phosphate pools in the body
26
Usually kinases are called after
The product they will make
27
The conversion between G3P and daP is performed by
Triose phosphate Isomerase
28
What is the difference between substrate level phosphorylation and oxidative phosphorylation
Substrate level phosphorylation- in the glycolysis | Oxidative phosphorylation- in the electron transport chain
29
Two forms of pyruvate and the difference in stability
Enol form and keto form | Keto form is more stable
30
What is the allosteric inhibitor for most of the enzymes in the cellular respiration
ATP | When there is a high concentration of ATP, it ill inhibit the enzymes in the beginning of glycolysis
31
What is the enzyme that is is inhibited by high ATP concentration
Phosphofructokinase
32
How ATP is produced
Enzyme--catalyzed reaction transfer of a phosphate group from an intermediate substrate to ADP
33
What is the fate of pyruvate (3)
1) Anaerobic conditions to ethanol and carbon dioxide(fermentation in yeast) 2) Anaerobic conditions to Lactate( muscle training) 3) Aeroboc conditions to acetyl CoA
34
The purpose of TCA cycle
To produce NADH and FADH2
35
The difference between the outer mitochondrion membrane and the inner membrane
Outer is permeable to small molecules and ions | Inner membrane->impermeable to most small molecules
36
Functions of inner mitochondrion membrane
Carries electron transport chain, ATP synthase and translocase that moves ADP in and ATP out -Vital for forming and maintaining proton gradient
37
What is the role of mitochondrial pyruvate carrier
To transport pyruvate across the inner membrane
38
Where is pyruvate converted to acetyl CoA
In the matrix- eukaryotes | In the cytosol-prokaryotes
39
What does pyruvate dehydrogenase complex include
TPP Lipoate FAD
40
What inhibits the conversion of pyruvate to acetyl CoA
ATP,acetyl-CoA,NADH,Fatty acids
41
What stimulates the conversion of pyruvate to acetyl CoA
AMP,CoA,NAD+,Ca2+
42
Is citric acid cycle catabolic or anabolic?
Both, it is amphibolic
43
dehydrogenase is
the enzyme that produces NADH and FADH2 and usually are named after the reactant
44
1 GTP= ___ ATP
0.75
45
How the pyruvate get inside the mitochondria?
Through porins
46
If delta G is 0, then
we have an equilibrium
47
How can oxaloacetate be used
-TCA -Glucose -Amino acids oxaloacetate will be converted to PEP ( phosphoenolpyruvate) and then to the products
48
What does happen when there is an urgent need in oxaloacetate
Pyruvate will be turned directly to oxaloacetate , not going through TCA cycle
49
How many NADH we have in the end of TCA cycle from one glucose?
10 NADH
50
What enzyme is used in TCA cycle and the electron transport chain
``` Succinate dehydrogenase( complex 2 in the electron transport chain) At first it puts the electrons to the iron atom, and then taking them away to the electron transport chain. ```
51
How many electrons does FADH2 and NADH have
2 electrons each
52
Iron sulphur center carry___ electron
1 electron
53
Cytochromes carry___ electron
1 electron
54
Quinones can accept
2 electrons and 2 protons
55
What is the difference in the nature of cytochromes, iron sulphur proteins and quinones
Iron sulphur protein and cytochrome protein | Ubiquinone- a non-protein enzyme
56
How many NADH you need to reduce O2 fully to water
2 NADH, because it requires 4 protons
57
What is the role of electron transport chain
To reduce O2 to water
58
How many proton you need to synthesize one ATP
4 | 3 proton to make a full turn+ 1 to carry phosphate group to ATP synthase
59
Why we say that there is a total yield of 30 or 32 ATP
Because NADH can be moved inside the mitochondria through different "shuttles". One is more costy than the other. Malate yields-2.25 ATP and G3P 1.5 ATP
60
How many ATP does NADH yield?FADH2
10 H+/4=2.5 ATP | 6 H+/4=1.5 ATP
61
How many protons are pumped at each complex
Complex 1 - 4 electrons Complex 3- 4 electrons Complex 2- 2 electrons
62
What is FMN
Flavin-containing prosthetic group that will accept the electrons from NADH
63
The pathway of electrons from NADH and FADH2
NADH->complex 1->Ubiquinone->complex 3->complex 4 | FADH2->complex 2->Ubiquinone->complex 3 ->complex 4
64
The pathway of electrons from NADH and FADH2
NADH->complex 1->Ubiquinone->complex 3->cytochrome c->complex 4 FADH2->complex 2->Ubiquinone->complex 3 ->cyrochrome c->complex 4
65
What happens if there is a partial transfer of electrons on oxygen in the electron transport chain
When there is 1 electron transfer, then superoxide ( free radical) 2 electrons -> peroxide The conversion of oxygen with one electron to peroxide is performed by
66
The conversion of oxygen with one electron to peroxide is performed by
Superoxide dismutase
67
ATP synthase is moved by
Proton gradient
68
What is the most important thing for ATP sythesize? ATP synthase or proton gradient?
Proton gradient
69
The structure of ATP synthase
F0 unit that turns proton flow F1 unit that phosphorylates ADP by changing its confirmation And a shaft that holds two units together and in place
70
where are F0 and F1 units
F0 is int he inner membrane | F1 in the mitochondrial matrix
71
How NADH from the cytosol from glycolysis gets into the matrix ?
From the cytosol to the intermembrane space it gets by diffusion. From the intermembrane space to the matrix it get by 2 ways . NADH->malate ( more favorable) NaDH->glycerol-3 -phosphate
72
What is the purpose of the anaerobic respiration
To regenerate NAD+ when there is no oxygen to have electron transport chain
73
Explain what happens with glucose without oxygen
Glucose->2 pyruvate -> 2 lactate | Glucose->2 pyruvate ->2 acetaldehyde ->2 ethanol
74
How is the biofuel made
With ethanol fermentation
75
What happens if we do not have much activity?
Acetyl CoA can be converted to FA If you have a lot of proteins -> acetyl CoA-> Fat Glucose->pyruvate->acetyl CoA-> fat