Topic 1: Biomembranes Flashcards

(39 cards)

1
Q

4 Functions of biomembranes

A
  • compartmentalization
  • a selective permeability barrier
  • scaffold for biochemical activities
  • respond to external signals
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2
Q

amphiphilic meaning

A

hydrophobic tail and hydrophilic head

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3
Q

What is the fluid mosaic model

A

it describes the biological membrane as a fluid bilayer with embedded proteins and how the asymmetry of the structure fits its functionality

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4
Q

The three major classes of membrane lipids

A
  • phosphoglycerides
  • sphingolipids
  • sterols
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5
Q

What is special about Phosphoglycerides?

A
  • most abundant class of lipids
  • the head groups can differ
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6
Q

structure of phosphoglycerides

A

hydrophilic head has a
- phosphate
- different amino acids (head group?)

hydrophobic tail has
- 2 fatty acid tails
- glycerol

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7
Q

how are head groups linked to the glyerol

A

by phosphodiesterbonds

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8
Q

what are the 3 head groups most used in our class and their charge?

A
  • phosophatidylethanolamine
  • phosophatidylserine (-)
  • phosophatidylcholine
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9
Q

What are the functions of the head groups?

A
  • affect the interaction of other macromolecules in the bilayer
  • have signalling functions
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10
Q

what are phosphoinositides?

A

they are bind to the cytosol leaflet and after the pathway it turns into messenger from calcium release and other intracellular stuff

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11
Q

What’s the pathway of phosphoinositides to IP3

A

1) phosphatidylinositol (PI) turns into PI 4-phosphate (PIP) by PI-4 kinase
2) then PI-4 phosphate turns into PI 4,5 biphosphate (PIP2) by PIP-5 kinase
3) PI 4,5 biphosphate to inositol 1,4,5 triphosphate (IP3) by phospholipase C and gives released from the cytosolic leaflet and DAG remains

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12
Q

sphingolipids

A

they are derivatives of sphingosine with a fatty acid tail

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13
Q

what is sphingomylien?

A

they are sphingolipids with a phosphocholine head group

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14
Q

what counts as phospholipids?

A

sphingomyelin and phosphoglycerides

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15
Q

what is a glycolipid?

A

sphingolipids that have single sugar or branched oligosaccharides as the head groups

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16
Q

where are glycolipids found?

A

the exoplasmic side of the plasma membrane

17
Q

what is the function of glycolipids?

A
  • protect the cell form harsh conditions
  • helps in cell adhesion
  • changes the electric field of the membrane
  • changes the concentration of ions at the membrane surface
  • Promotes protein folding and mediates binding of protein to chaperones
  • Makes glycoproteins more resistant to proteolytic digestion
18
Q

structure of sterols

A

have hydrophilic OH attached to 4 fused hydrophobic carbon rings

19
Q

what are unsaturated lipids

A

hydrocarbon tail that contains a double bond (kinked)

20
Q

what are saturated lipids

A

hydrocarbon tail that contains a no double bonds

21
Q

what makes a fluid like membrane

A

short and unsaturated acyl chains

22
Q

what makes a gel like membrane

A

long and saturated acyl chains

23
Q

explain lipid rafts

A

lipid drafts
- cholesterol and sphingolipids cluster together in the membrane microdomains
- lipid drafts are more order and resistant to extraction with non ionic detergents
- cholesterol makes the bilayer less fluid and permeable to water soluble molecules

24
Q

what is the hydrophobic effect

A

it is a tendency for hydrophobic (non polar molecules) to cluster together to limit the amount of surface area that has to interact with the hydrophilic parts.
-IT IS NOT AN ATTRACTIVE FORCE

25
what is lipid asymmetry and why is important?
it is needed for the function of cell membranes - the cytosolic side must be negative for proteins to bind upon it
26
what is the 4 ways the lipids move in the membrane
- rotation: the phospholipid moves is circle - flexion: rolls 180 degrees - lateral diffusion: move the other side - flip-flop: the most rare, it moves across the bilayer (very slow)
27
what enzyme creates membrane asymmetry?
flippases
28
what is FRAP
fluorescence recovery after photobleaching - how quick the movement of the lipids in the membrane
29
5 ways to restrict lateral mobility of plasma membrane proteins
- self-assembly in large aggregates - tethered to outside molecules by interactions - tethered to inside molecules by interactions - interactions between other surface proteins on another cell - cortical cytoskeletons
30
what are the three ways proteins interact with lipids
- transmembrane/integral proteins - lipid anchored - membrane- associated protein
31
transmembrane/integral
- an alpha helix with mostly hydrophobic amnio acids
32
how is the integrated part of transmembrane protein detected?
a hydropathy plot can predict by finding the portions with high portions of hydrophobic amino acids (positive is hydrophobic) - some can have multiple integrated portions but usually max is 2
33
What side does Lipid Anchored
covalently bound to the extracellular or cytoplasmic side and distinguished by the type of lipid
34
what lipid anchored goes on the cytosolic side?
- acylation - prenylation
35
what lipid anchor goes on the extracellular side?
- GPI: glycosylphopatidylinositol
36
how is the origination of single pass transmembrane determined?
the charges of the terminals not the internal stop sequence - positive is always on the cytosol (cytosol is negative so attracts positive - negative goes to ER lumen
37
What is the function of detergents?
they disrupt hydrophobic interactions
38
what factors release peripheral protiens?
- changes in pH * changes in ionic strength of buffer * chelation of Ca2+ * addition of urea or carbonate
39
what factors cause release of internal proteins?
detergent solubility