Cellular Control, Inheritance, Variation and Evolution Flashcards
What is a polypeptide?
A polymer consisting of a chain of amino acid residues joined by peptide bonds
What is a gene?
A length of DNA that codes for one (or more) polypeptides
What is a genome?
The genome of an organism is the entire DNA sequence of that organism. The human genome consists of about 3 billion nucleotide base pairs
What is a protein?
A large polypeptide - usually 100 or more amino acids. Some proteins consist of one polypeptide, and some of more than one
How many genes are there in the human genome?
About 25000
What is a locus?
The specific position on the chromosome occupied by a particular gene
What is the structure of DNA?
A double helix formed from two polynucleotide strands, made up of lots of nucleotides joined together in a long chain
What is the structure of a nucleotide?
Each nucleotide is made from a phosphate group, a pentose (5 carbon) sugar and a nitrogenous base. The sugar in DNA is a deoxyribose sugar, and each nucleotide has the same sugar and phosphate, but there are 4 possible bases.
What are the four possible DNA bases?
Adenine, thymine, cytosine and guanine
Where do nucleotides in a polynucleotide strand join together?
Between the phosphate group of one nucleotide and the sugar of another, creating a sugar-phosphate backbone
How do two DNA polynucleotide strands join together?
By hydrogen bonds between the bases
What are the complimentary base pairs?
Adenine with thymine
Guanine with cytosine
How many hydrogen bonds form between C and G?
3
How many hydrogen bonds form between A and T?
2
What type of bases are adenine and guanine?
Purines
What type of bases are cytosine and thymine?
Pyrimidines
How many bases code for each amino acid?
Three
What can triplets of base pairs code for?
Different amino acids, although some triplets code for the same amino acid, or to stop or start a protein (these triplets are found at the beginning and end of every gene
Where are DNA molecules found?
In the nucleus of the cell
Why can DNA not travel to the ribosomes for protein synthesis?
Because it is too large to move out of the nucleus
What is RNA?
A single polynucleotide strand containing the sugar ribose instead of deoxyribose and uracil instead of thymine as a base
What is transcription?
When a section of DNA is copied into RNA
What is translation?
When RNA leaves the nucleus and joins with a ribosome in the cytoplasm, where it can be used to synthesise a protein
What are the two types of RNA?
Messenger RNA (mRNA) Transfer RNA (tRNA)
What is the structure of mRNA?
A single polypeptide strand made in the nucleus during transcription
What is the function of mRNA?
It carries the genetic code from the DNA in the nucleus to the cytoplasm, where it’s used to make a protein during translation
What is a group of three adjacent base pairs called?
A codon
What is the structure of tRNA?
A single polynucleotide strand folded into a clover shape. Hydrogen bonds between specific base pairs hold the molecule in this shape. Every tRNA molecule has a specific sequence of three base pairs at one end called an anticodon, as well as an amino acid binding site at the other end
What is the function of tRNA?
It is found in the cytoplasm where it is involved in translation. It carries the amino acids that are used to make proteins
What happens during the process of transcription?
- RNA polymerase attached to the DNA
- complimentary mRNA is formed
- RNA polymerase moves down the DNA strand
- mRNA leaves the nucleus
What is RNA polymerase and what does it do?
It is an enzyme which attaches to the DNA double helix at the beginning of a gene and causes the hydrogen bonds between the polynucleotide strands to break, separating the strands and causing the DNA molecule to uncoil. One of the strands is then used as a template to make an mRNA copy
How is mRNA formed?
RNA polymerase lines up free RNA nucleotides along the template strand of DNA. Complementary base pairing means that the mRNA strand ends up being a complimentary copy of the DNA. Once the complimentary RNA nucleotides are lined up, they are joined together to form an mRNA molecule
What happens to the DNA strands after the mRNA strand has been formed?
The hydrogen bonds between the two strands reform and they coil back into a double helix
When does RNA polymerase stop making mRNA?
When it reaches a particular sequence of DNA called a stop codon, it stops making mRNA and detaches from the DNA.
What happens to the strand of mRNA when it has finished being copied from the DNA?
It moves out of the nucleus through a nuclear pore and attaches to a ribosome in the cytoplasm, ready for translation to take place
Where does translation take place?
At the ribosomes in the cytoplasm
What happens during translation?
Amino acids are joined together by a ribosome to make a polypeptide chain, following the sequence of codons carried by the mRNA.
How does translation work?
The mRNA attaches itself to a ribosome and tRNA molecules carry amino acids to the ribosome. A tRNA molecule with an anticodon complimentary to the first codon on the mRNA attaches itself to the mRNA by complimentary base pairing. A second tRNA molecule attaches to the second codon in the same way.
The first tRNA molecule then moves away, leaving it’s amino acid attached to the second tRNA’s amino acid by a peptide bond
This process continues until a stop codon is reached, and the polypeptide moves away from the ribosome
Why is the sequence of amino acids in a protein crucial?
It forms the primary structure of a protein, which determines the tertiary structure - how the protein folds up into its 3D shape and the bonds that hold it in that shape. The tertiary structure is what allows a protein to function, e.g. the active site of an enzyme is a specific shape to fit with a substrate
How is protein synthesis different in prokaryotes?
The DNA is not inside a nucleus, so translation begins as soon as some mRNA has been made
How is protein synthesis controlled?
At the genetic level by starting or stopping transcription of genes. Not all genes are transcribed in all cells all the time. Genes that aren’t being transcribed are said to be switched off, while those being transcribed are switched on
What is an operon?
A section of DNA that contains structural genes, control elements and sometimes a regulatory gene. Operons are often found in prokaryotes, and they are involved in genetic control of protein synthesis
What do the structural genes in an operon code for?
Useful proteins, such as enzymes. All of the structural genes in an operon are transcribed together
What do the control elements in an operon consist of?
A promoter: this is a DNA sequence, located before the structural genes, which RNA polymerase binds to
An operator: a DNA sequence next to the structural genes that can switch them on and off
What does the regulator gene do?
The regulator gene codes for a transcription factor. The regulator gene is not part of the operon, and could be some distance away from it
What is a transcription factor?
A protein that binds to DNA and switches genes on or off by starting or stopping transcription. Factors that start transcription are called activators, and factors which stop it are called repressors
How do the quantities of certain molecules in an environment or cell affect the synthesis of certain proteins?
The shape of a transcription factor determines whether it can bind to DNA or not, and this shape can be altered by the binding of certain molecules, such as hormones and sugars, to the transcription factor. Therefore, the amount of these molecules present will affect the binding of the transcription factor, and therefore control whether or not certain proteins are synthesised
What is an example of an operon?
The lac operon, which responds to the presence or absence of lactose in its surroundings
What do E.Coli use to respire?
Glucose, but they can use lactose if glucose is unavailable, once the genes needed to respire lactose are switched on
How does the lac operon work when lactose is not present?
The regulator gene is expressed and the repressor protein synthesised. The repressor binds to the operator site and stops RNA polymerase from attaching to the promotor region, so transcription of the enzymes needed to respire lactose is blocked
How does the lac operon work when lactose is present?
The repressor protein that binds to the operator site and blocks transcription has a second active site, which allows it to bind to lactose. When this happens, the protein changes shape and can no longer bind to the operator site, allowing transcription to occur.
What are the enzymes used in the metabolism of lactose in E.coli?
Beta-galactosidase is used to catalyse the hydrolysis of lactose to glucose and galactose
Lactose permease transports lactose into the cell
How is protein activation controlled?
Some molecules that control protein activation work by binding to cell membranes and triggering production of cyclic AMP inside the cell. cAMP then activates proteins inside the cell by altering their 3D structure
What is a body plan?
The structure of an organism
What type of genes code for the proteins that control body plan?
Homeotic genes
Similar homeotic genes are found in…
Animals, plants and fungi, meaning that body plan is controlled in a similar way in flies, mice, humans, etc
How do homeotic genes control development?
They have regions called homeobox sequences that code for a part of the protein called the homeodomain. The homeodomain binds to a specific site on DNA, allowing the protein to work as a transcription factor. The proteins bind to DNA at the start of development genes, activating or repressing transcription and so altering the production of proteins involved on the development of the body plan
What is the process of programmed c death called?
Apoptosis
What are the steps involved in apoptosis?
- enzymes are released from lysosomes inside the cell. The enzymes break down cell components, eg proteins, DNA
- the cell shrinks and begins to fragment
- phagocytes engulf and digest the cell fragments
How is apoptosis involved in the development of body plans?
Mitosis and differentiation create the bulk of body parts and then apoptosis refines the parts by removing unwanted structures, e.g, connecting tissue between fingers
How is apoptosis coded for in DNA?
All cells contain genes that code for proteins that promote or inhibit apoptosis. During development, the genes controlling apoptosis are switched on and off in appropriate cells, so that some die and the correct body plan develops
What is a mutation?
Any change to the base sequence of DNA
What are the types of mutations that can occur?
Substitution - one base is swapped for another
Deletion - one or more bases are removed
Insertion - one or more bases are added
Duplication - one or more bases are repeated
Inversion - a sequence of bases is reversed
What effect can a mutation have on a protein?
The order of DNA bases in a gene determines the order of amino acids in a protein. If a mutation occurs in the gene, the primary structure of the protein could be altered, which may change the final 3D shape of the protein, causing it to not work correctly
What is a frameshift mutation?
When an insertion or deletion changes the way the rest of the base sequence is read, as the number of bases present has changed and all of the base triplets that follow will be shifted. Depending on how far along the sequence the mutation occurs, frame shift mutations can have huge effects on the protein
Why might a mutation not affect an organism?
- the mutation may change a base in a triplet, but the new triplet still codes for the same amino acid
- the mutation may code for a chemically similar amino acid to the original, so it functions the same
- the mutated triplet may code for an amino acid unrelated to the protein’s function