Circadian Rhythm Flashcards

1
Q

What does the utility of circadian rhythms rely on?

A

Proper timing relative to stochastic external environmental cycles

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2
Q

What does this mean for the construction of circadian rhythms?

A

Entrainment to external time cues or zeitgeber.

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3
Q

What is the principle zeitgeber for mammals?

A

Light.

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4
Q

What are Phase Response Curves?

A

These allow studying of effects of external stimuli on endogenous rhythms, by characterising phase shift induced by stimulus application at different phases of an oscillation.

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5
Q

Where is the mammalian circadian rhyhtm found?

A

Hypothalamus superchiasmatic nucleus.

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6
Q

What is the general micro structure of the SCN

A

Thousands of coupled clock neurons containing biochemical oscillators.

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7
Q

How does a light stimulus relate to the structure of SCN?

A

Shifts oscillations of individual clock neurons, that in turn shift collective rhythm produced by the ensemble.

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8
Q

What is the biological basis of how the CR interprets light?

A

Retinal photoreceptors called Intrinsically Photosensitive Retinal Ganglion Cells detect ambient light changes, transmitting this to the master pacemaker in the SCN in the hypothalamus.

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9
Q

What is the function of the SCN?

A

Master pacemaker of circadian system, co-ordinating timing of physiolgoical processes/behaviours, based on input from light-dark cycles, thus stnchronizing timing of CR.

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10
Q

What happens in response to darkness?

A

Pineal gland production of melatonin, which decreases during the day.

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11
Q

Why is melatonin important?

A

Promotes sleep onset and consolidations, suppressed by exposure to blue light.

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12
Q

How is activity/stability of clock proteins regulated?

A

By PTM like phosphorylation and acetylation.

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13
Q

Why is phosphorylation important in clock protein regulation?

A

Nuclear entry, stability, and degradation of clock proteins.

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14
Q

How does the SCN maintain a molecular clock?

A

Neurons with robust circadian rhythms, driven by the molecular clockwork of Per and Cry.

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15
Q

How do these SCN neurons maintain one consistent rhythm?

A

Synaptic connections, gap junctions, and paracrine signalling mechanisms.

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16
Q

What are Phase Response Curves?

A

Depict magnitude and direction of phase shifts induced by light exposure at different times of the circadian cycle, with a biphasic pattern.

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17
Q

When do PRC phase advances occur?

A

When light exposure occurs during early subjective night, and phase delays occur when light exposure during late subjective night or early subjective day.

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18
Q

What is the biochemistry of phase shifts?

A

Light-induced phase shifts involve intracellular signalling pathways modulating clock gene activity and their protein products.

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19
Q

What do these Phase Shift signalling pathways do?

A

Involve second messenger systems, protein phosphorylation cascades, and gene expression changes influencing clock gene expression timing and CR phase.

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20
Q

What is the core of the CR?

A

Molecular feedback loops involving clock genes.

21
Q

What are the clock genes involved in CR?

A

Period, Cryptochrome, and Bmal1.

22
Q

What cycle do clock genes undergo?

A

Rhythmic transcription and translation over a roughly 24-hour period.

23
Q

What regulates clock gene expression?

A

Transcriptional-translational feedback loops, Bock and Bmal1 activation Per and Cry transcription.

24
Q

How does clock gene expression then form a loop?

A

Protein products of Per and Cry form complexes that inhibit their own transcription creating a negative feedback loop.

25
Q

What other processes contribute to oscillatory dynamics?

A

Post-translational modifications, protein degradation pathways, and other regulatory mechanisms.

26
Q

What is the function of the circadian rhythm?

A

Synchronization to external environment, regulating sleep-wake cycles, hormone secretion control, and metabolic processes coordination.

27
Q

What is an example of synchronization of physiology to external envirnoment?

A

Body temperature.

28
Q

How does CR regulate body temperature?

A

Light information transmitted to the SCN neurons via retinal ganglion cells with electrical activity regulate gene expression, driving rhythm in various physiological functions, mediating vasodilation, vasoconstriction, and sweating processes to dissipate heat.

29
Q

What mediates CR regulation of thermoregulation?

A

Interplay between heat production and heat loss.

30
Q

Why is entrainment important?

A

Allows organisms to anticipate and align internal rhythms with predictable changes in environment, this optimizing biological functions like metabolism, as external environmenta varies spatially and temporally.

31
Q

How do photoreceptors interact with the circadian rhythm?

A

They serve as primary sensors of environmental light cues, entraining the clock to 24 hour light-dark cycle.

32
Q

What is the photoreceptor mechanism?

A

Detection of changes in light levels and transmissions of this information to SCN.

33
Q

What photoreceptors are used for Animals?

A

Melanopsin-containing Retinal Ganglion Cells, Rods and cones, and Cryptochromes.

34
Q

What photoreceptors are used for plants?

A

Phytochromes, cryptochromes, and phototropins.

35
Q

What is temperature compensation?

A

This is the ability of biological clocks to maintain constant periods across a range of temperatures.

36
Q

Why is temperature compensation important?

A

Essential for organisms in environments where temperatures varying throughout day and across seasons, ensuring robust and reliable CR.

37
Q

What is an example of a mechanism regulating temperature compensation?

A

Temperature-dependent kinetics for clock genese, meaning synthesis/degradation/interaction rate change with temperature, regulated by feedback loops.

38
Q

How do feedback loops regulate temperature compensation?

A

Transcriptional-translational feedback mechanisms generating oscillations in gene expression and protein levels, driving rhyhtmicitiy.

39
Q

What govern CR?

A

Transcriptional-Translational Feedback Loops

40
Q

What do transcriptional-translataional feedback loops of CR involve?

A

Rhythmic expression and feedback regulation of clock genes, where Per, Cry, Clk, and Bmal1 are rhythmically transcribed and translated, which form complexes regulating their own transcription, creating self-sustaining oscillatio.

41
Q

How is temperature perturbance here compensated?

A

If temperatures accelerate degradation of clock proteins, compensation slow down degradation rate.

42
Q

How might degradation rate be slowed for temperature?

A

HSF1 regulates heat shock protein expression

43
Q

What do heat shock proteins do?

A

Protect cellular proteins, including clock proteins involved in circadian rhythms

44
Q

How is HSF1 activated by the CR?

A

clock AND BMAL1 can regulate TF that upregulate its expression.

45
Q

What three characteristics are required for being considered as a circadian rhythm?

A

A free-running cycle, entrainability, and temperature compensation.

46
Q

What is a free-running cycle?

A

A cycle not solely driven by environmental cues, but exhibits intrinsic, self-sustaining cycles.

47
Q

Despite the intrinsic nature of CR, how do they respond to environmental signals?

A

Zeitgebers.

48
Q

What are examples of Zeitgebers?

A

Light-dark cycles, temperature fluctuations, social cues, feeding-fasting cycles…

49
Q
A