Microbiology Exam III Flashcards
Key points of genetics.
The science of heredity; the central dogma of molecular biology; mutations; gene expression controlled by operons.
What is the typical chain of events described by the central dogma?
DNA -> mRNA -> Protein -> Function
How do mutations alter a genome?
Mutated DNA -> Mutated mRNA -> Altered protein -> Altered function
What are 3 things that the alteration of bacterial genes and gene expression can cause?
- Cause of disease
- Prevent disease treatment
- Manipulated for human benefit
Define Genetics.
The study of genes,
how they carry information,
how information is expressed,
and how genes are replicated.
Define Chromosomes.
Structures
containing DNA that
physically carry hereditary
information; the
chromosomes contain genes.
Define Genes.
Segments of DNA
that encode functional
products, usually proteins.
Define Genome.
All the genetic
information in a cell.
What is the Genetic code?
A set of rules that determine how a
the nucleotide sequence is converted to an amino acid a sequence of a protein.
Central Dogma
DNA -> RNA -> Protein
Define Genotype.
The genetic makeup of an organism,
Define Phenotype.
The outward expression of a gene.
Bacteria usually have a ________ circular chromosome made of DNA and associated proteins.
Singular
Define Vertical gene transfer.
The flow of genetic information from
one generation to the next.
Define Horizontal gene transfer.
The flow of genetic information
within the same generation.
DNA is the __________ for a cell’s proteins, including enzymes.
Blueprint
What is obtained either from another cell in the same generation or from the parent cell during cell division?
DNA
DNA can be expressed within a cell or transferred to another cell through __________ or ___________.
Recombination and Replication
Explain DNA expression.
Genetic information is used
within a cell to produce the
proteins needed for the cell
to function.
*Cell metabolizes and grows
Explain DNA recombination.
Genetic information can be
transferred horizontally between
cells of the same generation.
*Recombinant cell
Explain DNA replication.
Genetic information can be
transferred vertically to the
next generation of cells.
*Offspring cells
What does DNA form?
A double-helix
What does the backbone of DNA consist of?
Deoxyribose-phosphate
What are the two stands of nucleotides held together by?
Hydrogen bonds between A-T and C-G
DNA strands are ____________.
Antiparallel
What forms the genetic instructions of the organism?
The order of the nitrogen-containing bases.
Explain the antiparallel direction of DNA.
The sugar-phosphate backbone of one strand is upside down relative to the backbone of the other stand.
What serves as a template for the production of the second stand of DNA?
The first DNA strand
What two enzymes relax the DNA strands?
Topoisomerase and
Gyrase
What enzyme separates the strands?
Helicase
What is created at the separation of the enzymes?
A replication fork
One “parental” double-
a stranded DNA molecule is
__________ to two identical
offspring molecules.
Converted
What nucleotides/elements make up DNA?
Nucleotides
A- Adenine
T- Thymine
C- Cytosine
G- Guanine
Elements
Deoxyribose sugar
Phosphate
What happens to the double helix of the parental DNA?
It separates as weak hydrogen bonds between the nucleotides on opposite strands break in response to the action of replication enzymes.
During replication, what do hydrogen bonds form between?
They form between new complementary nucleotides and each parental template strand to form new base pairs.
During replication, what do enzymes catalyze the formation of?
They catalyze the formation of sugar-phosphate bonds between sequential nucleotides on each resulting daughter strand.
During replication, what does DNA polymerase do?
It adds nucleotides to the growing DNA strand.
How does DNA polymerase add nucleotides to the DNA strand?
- In the 5’ -> 3’ direction.
- Leading strand is synthesized continuously.
- Lagging strand is synthesized discontinuously, creating
Okazaki fragments. - DNA polymerase removes RNA primers; Okazaki
fragments are joined by the DNA polymerase and DNA
ligase.
Purpose of DNA Ligase.
Makes covalent bonds join DNA strands; Okazaki fragments, and new segments in excision repair.
Purpose of Endonucleases.
Cut DNA backbone in a strand of DNA; facilitate repair and insertions.
Purpose of Exonucleases.
Cut DNA from an exposed end of DNA; facilitate repair.
Purpose of Methylase.
Adds methyl group to selected bases in newly made DNA.
Purpose of Photolyase.
Uses visible light energy to separate UV-induced pyrimidine dimers.
Purpose of Primase.
An RNA polymerase that makes RNA primers from a DNA template.
Purpose of Ribozyme.
RNA enzyme that removes introns and splices exons together.
Purpose of snRNP.
RNA protein complex that removes introns and splices exons together.
Purpose of Transposase.
Cuts DNA backbone, leaving single-stranded “sticky-ends”.
Summary of the events at the replication fork.
- Enzymes unwind the parental double
helix. - Proteins stabilize the unwound parental DNA.
- The leading strand is synthesized continuously by DNA polymerase.
- The lagging strand is synthesized discontinuously. Primase, an RNA polymerase, synthesizes a short RNA primer, which is then extended by
DNA polymerase. - DNA polymerase digests RNA primer and replaces it with DNA.
- DNA ligase joins the discontinuous fragments of the lagging strand.
During replication, how is energy supplied?
By nucleotides
How do the nucleotides provide energy?
Hydrolysis of two phosphate groups on ATP provides energy.
What happens when a nucleotide triphosphate bonds to the sugar?
It loses two phosphates.
Most bacterial DNA replication
is ______________.
Bidirectional
Each offspring cell receives
_____ copy of the DNA
molecule.
One
Replication is highly accurate
due to the proofreading
the capability of __________.
DNA polymerase
Characteristics of RNA.
- Single-stranded nucleotide
- 5-carbon ribose sugar
- Contains Uracil (U) instead of Thymine (T)
What is Ribosomal RNA (rRNA)?
Integral part of
ribosomes
What is Transfer RNA (tRNA)?
Transports amino acids
during protein synthesis.
What is Messenger RNA (mRNA)?
Carries coded
information from DNA to ribosomes.
Synthesis of a complementary mRNA strand from a __________.
DNA template
When does transcription begin?
RNA polymerase binds to the promoter sequence on DNA.
After RNA polymerase beings to the promoter sequence, what happens?
Transcription proceeds in the 5’ -> 3’ direction; only one of the two DNA strands is transcribed.
When does transcription stop?
When it reaches the
terminator sequence on DNA.
Explain the Transcription process.
- RNA polymerase binds to the promoter, and DNA unwinds at the beginning of
a gene. - RNA is synthesized by complementary
base pairing of free nucleotides with the
nucleotide bases on the template strand
of DNA. - The site of synthesis moves along DNA;
DNA that has been transcribed rewinds. - Transcription reaches the terminator.
- RNA and RNA polymerase are
released, and the DNA helix re-forms.
What is mRNA translated into?
The “language” of proteins.
What are Codons?
Groups of three mRNA nucleotides
that code for a particular amino acid.
How many sense codons encode the 20 amino acids?
61
The genetic code involves ___________, meaning each amino acid is coded by several codons.
Degeneracy
Translation of UUU and UUC.
Phe
Translation of UUA and UUG.
Leu
Translation of UCU, UCC, UCA, and UCG.
Ser
Translation of UAU and UAC.
Tyr
Translation of UAA and UAG.
Stop
Translation of UGU and UGC.
Cys
Translation of UGA.
Stop
Translation of UGG.
Trp
Translation of CUU, CUC, CUA, and CUG.
Leu
Translation of CCU, CCC, CCA, CCG.
Pro
Translation of CAU and CAC.
His
Translation of CAA and CAG.
Gin
Translation of CGU, CGC, CGA, and CGG.
Arg
Translation of AUU, AUC, and AUA.
Lle
Translation of AUG.
Met/Start
Translation of ACU, ACC, ACA, and ACG.
Thr
Translation of AAU and AAC.
Asn
Translation of AAA and AAG.
Lys
Translation of AGU and AGC.
Ser
Translation of AGA and AGG.
Arg
Translation of GUU, GUC, GUA, and GUG.
Val
Translation of GCU, GCC, GCA, and GCG.
Ala
Translation of GAU and GAC.
Asp