Molecules to Cells Quiz #2 Flashcards

0
Q

What does Keq describe?

A

How much product and substrate is present at equilibrium.

Keq = [product]/[substrate]

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1
Q

Catalysts lower _______ of a reaction but do not change its _______.

A

free energy of activation/activation energy and rate constant, equilibrium constant (Keq)

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2
Q

What is the equation that describes how much energy is released or absorbed in a reaction using the equilibrium constant?

A

deltaG = -RTlnKeq

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3
Q

What is the major driving force that moves a catalytic reaction forward?

A

The bond energy differences between substrate and product

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4
Q

When Keq < 1, deltaG is _______ and the reaction is _______. When Keq > 1, deltaG is _______ and the reaction is _______.

A

positive, not favorable, negative, favorable

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5
Q

Name the six classes of enzymes, 1-6.

A

Over The Hill Lies Indian Land

  1. Oxidoreductases
  2. Transferases
  3. Hydrolases
  4. Lyases
  5. Isomerases
  6. Ligases
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6
Q

What do lyases do?

A

They add and remove groups from double bonds

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7
Q

What is common to all enzymes’ function?

A

proximity effect, because they all increase the concentration of the reactants within the active site

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8
Q

What is a common characteristic of transition state molecules?

A

They have an extra constituent attached to the reactant

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9
Q

What is the logic behind transition state analogs?

A

Enzymes bind the transition state molecules more tightly than the reactants.

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10
Q

What does an electrophile do?

A

It loves electrons (-phile) so it takes them

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11
Q

What does a nucleophile do?

A

It gives electrons

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12
Q

What are the two forms of microenvironment effects?

A

hydrophobic and charge

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13
Q

Explain charge microenvironment effect.

A

Charged or polar amino acid side chains near a functional group can alter the pKa or reactivity of that group

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14
Q

When you see ____, think Schiff base

A

-NH2

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15
Q

General pattern: the _________ of an enzyme is interacting with the _________ of the substrate

A

nucleophile, electrophile

16
Q

Explain the difference between specific acid-base catalysis vs. general acid-base catalysis

A

Specific acid-base catalysis involves constituents of water and waiting to get a proton from water (whose pool is 10^-7). General acid-base catalysis is much more common, in which the water that’s required the catalysis is split by the functional groups in the enzyme so the reaction is more active