Test 3 part II Flashcards

1
Q

After transcription in prokaryotic cells, what occurs next?

A

Immediate translation

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2
Q

After transcription in eukaryotic cells, what occurs next?

A

RNA processing

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3
Q

What three steps occur in RNA processing?

A

1) 5’ end cap
2) 3’ end A tails
3) Introns get removed

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4
Q

Where do ribosomes know where to bind for translation?

A

Shine degarno sequence

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5
Q

What are the 4 binding sites on the ribosome?

A

1) mRNA
2) P site
3) A site
3) E site

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6
Q

In ribosome binding how does the site order work?

A

tRNA binds to P site, next tRNA binds to A site, amino acid in P goes to E and peptide bond forms between the two amino acids. The ribosome shifts and moves down by 1 codon, but tRNA site stays connected to mRNA so E leaves and P moves to E and A site is open again

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7
Q

Translation occurs until what occurs?

A

Stop codon in which a release factor protein binds

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8
Q

Where are the two spots translation can occur?

A

Surface of ER and cytoplasm

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9
Q

When translation occurs on ER where will the protein go?

A

Into ER to later be transported to golgi

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10
Q

How does translation occur in cytosol?

A

free ribosome

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11
Q

What is the structure/ shape of ER

A

continuous network of flattened sacs, tubules, and associated vessivles

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12
Q

What are the sacs of the ER called?

A

cisternae

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13
Q

What is the space enclosed by the sacs called?

A

lumen

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14
Q

Why do fibroblasts have lots of ER?

A

fibroblasts function is to produce a protein of collagen which goes outside the cell so its translated on rough ER to go to the golgi and then out of the cell membrane

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15
Q

Where are ribosomes found on ER

A

attached to outer surface of ER away from lumen

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16
Q

What is the function of Rough ER?

A

site of protein synthesis for some proteins and the proteins get glycosylated

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17
Q

What is glycosylated?

A

adding of carbohydrates

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18
Q

What are the types of glycosylation?

A

N and O linked

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19
Q

What do the N and O linked glycosylation refer to?

A

The N and O refer to the atom and the specific amino acid its bound to

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20
Q

What is N linked glycosylation?

A

N is bounded to nitrogen (aspargine)

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21
Q

What is O linked glycosylation?

A

O is bounded to oxygen (serine of thereonine)

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22
Q

How are proteins glycosylated in ER?

A

1) synthesis of large saccharide molecule on outside of ER
2) The large molecule can’t go through membrane so flipped
3) transfered to proteins

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23
Q

What carrier protein is the saccharide in glycosylation built upon?

A

dolichol

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24
Q

What is the mechanism used to flip the saccharide into rough ER?

A

flippase

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25
Q

What are the major functions of the smooth ER?

A

1) carbohydrate metabolism
2) calcium storage
3) biosynthesis of steroids/ cholesterol
4) biosynthesis of Membrane lipids

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26
Q

The smooth ER is involved in the breakdown of what?

A

stored glycogen in liver cells

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27
Q

What is the role of smooth ER in the catabolism of Liver glycogen?

A

removes phosphate off glucose 6-P

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28
Q

Where is calcium storage important for?

A

muscle cells

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29
Q

Where is calcium stored?

A

in ER lumen that contains calcium binding proteins

30
Q

What is it called when smooth ER has high concentration of Ca2+ in muscle cells?

A

sarcoplasmic reticulum

31
Q

Smooth ER is main source/ synthesis of what things?

A

lipids, steroids, cholesterol

32
Q

The smooth ER synthesizes by enzymes found ONLY where?

A

on the monolayer of the ER that faces the cytosol (not lumenal side)

33
Q

Cell membranes are what?

A

bilayer

34
Q

How do they get newly synthesized phospholipids to other layer

A

flippases

35
Q

How do the lipids move from ER to membrane?

A

golgi vessicles

36
Q

What is golgi complex apparatus?

A

series of flattened, membrane-bound cisternae (typically 3-8)

37
Q

What is CGN?

A

cis-golgi network

38
Q

What is cis-golgi network?

A

closest to ER (vesicles first arrive)

39
Q

What is TGN?

A

trans-golgi network

40
Q

What is trans-golgi network?

A

opposite of CGN (they leave here and go to membrane)

41
Q

Do golgi’s have shape?

A

Yes, they have definite shape and definite inside and outside

42
Q

What happens to proteins before leaving the ER?

A

they are glycosylated

43
Q

What organelle is the beginning of O linked glycosylation?

A

golgi apparatus

44
Q

How is each part of the golgi unique?

A

each has a different enzyme that catalyze different steps and do further glycosylation

45
Q

How does transportaion from ER, through Golgi, and beyond occur?

A

transport vesicles

46
Q

What is exocytosis?

A

Taking something inside out

47
Q

What is endocytosis?

A

Taking something outside in

48
Q

How does endocytosis work?

A

something attaches to membrane and vesicle comes off membrane and is internalized (swallowed into cell)

49
Q

vesicles can be large and dense and become what?

A

granules

50
Q

What are Zymogen granules?

A

granules that contain digestive enzymes which fuse with the membrane of the cell and are released into digestive system

51
Q

What are the two general types of endocytosis?

A

phagocytosis and pinocytosis

52
Q

In endocytosis, does it take the opposite track as exocytosis (back to golgi)?

A

No it usually fuses with endosomes and Lysosomes

53
Q

What are lysosomes?

A

membrane bound organelles that contain digestive enzymes to degrade all major classes of biomolecules

54
Q

Where are the digestive enzymes of the lysosomes made?

A

rough er

55
Q

Are the newly formed enzymes of Rough ER active

A

No, they must first be activated upon arrival to lysosome because it degregades everything

56
Q

How do enzymes become activated?

A

drop in pH

57
Q

What is phagocytosis?

A

ingestion of large molecules or entire cells

58
Q

How does immune and health functions depend on phagocytosis?

A

needs to remove pathogens, recycle things

59
Q

What occurs if there is a defective enzyme in lysosome?

A

there would be a buildup of that molecule

60
Q

What disease occurs if lysosome does not receive any digestive enzymes?

A

I-cell disease

61
Q

What disease occurs if buildup of carbohydrates occurs/

A

Hunter syndrome

62
Q

What disease occurs if build up of glycolipids?

A

Tay-Sachs

63
Q

What is LDL

A

low density lipoprotein

the circulating form of cholesterol in our blood

64
Q

How is LDL removed from the blood?

A

binding to LDL receptors

65
Q

If the receptors are defective what disease occurs?

A

familial hypercholesterolemia

66
Q

What are the organelles peroxisomes?

A

contain enzyme called catalase that degrades hydrogen peroxide

67
Q

How are peroxisomes involved in lipid metabolsim?

A

involved in beta oxidation of fatty acids into smaller pieces

68
Q

where does the further oxidation of fatty acids to the 2 carbon acetyl coA occur?

A

mitochondria

69
Q

What is the stored fat?

A

triaglyceraldehyde

70
Q

How is fat converted to energy?

A

chop the fatty acids off the backbone and metabolize in acetyl CoA and then this will be metabolized through TCA cycle