Virology Flashcards
Describe an emerging virus…
Never before seen viruses
- Mutated forms of an older existing disease
- Have altered: virulence, distribution, host and geographic location
What are the main things that are altered in a emerging disease
Virulence
Distribution
Host
Geographic location
What is the size range of viruses?
17-230nm
How big is an RBC?
7000nm
How big is the average bacteria?
1000nm
What is the limit of resolution of light microscope?
300nm
What is the limit of resolution of an electron microscope?
1-2nm
How big is a double helix of DNA?
2nm
Describe a virus…
Small Obligate Don't possess standard cellular organelles Highjack cellular machinery of host intracellular parasites Present everywhere Filterable agents Inert outside a living cell
What are the two phases of viral existence?
- Transmission phase
2. Replication phase
How are viruses obligate?
They lack the metabolic capabilities necessary to reproduce independently including energy production and protein synthesis
How are viruses classified?
- Nucleic acid type (DNA or RNA)
- Single stranded or double stranded nucleic acid
- RNA positive or Negative
- Mono-partite or multipartite
- Haploid
Mono-partite vs. multpartite
Mono-partite means the virus has a single molecule of nucleic acid
Multipartite means the virus has segmented nucleic acid
Are all viruses haploid?
Yes, except retroviridae
What are the other components of viruses?
Glycoproteins
Lipids
Protein
What is a virion?
A complete virus particle
What is a nucleocapsid?
A capsid protein coat and viral nucleic acid. With or without lipid envelope and protein matrix
What shapes can a capsid be?
Icosahedral
Helical
Describe the envelope…
Lipid bilayer
Host derived
Formed when a virus particle buds through cellular membranes
Then becomes virus derived as reproduction continues
What is the formal classification system?
Order Family Sub-family Genus Species
What is the informal “practical” classification?
Subspecies
Strains
Variants
What are the 5 steps in viral pathogenesis?
- Entry
- Incubation or dissemination
- Disease
- Spread to other animals
- Recovery OR death OR persistent infection
What are the possible routes of virus entry?
Respiratory tract Nose and mouth Conjunctiva Scratches Alimentary Tract Urogenital Tract Anus Skin Arthropods
Describe the Skin…
It is quite a good barrier
- need a breach of skin integrity e.g. scratch to get through the skin
Which route is the most common route for virus entry?
The respiratory system
- there are a huge amount of viral particles suspended in air
What protective mechanisms does the respiratory tract have against viruses?
- Mucus blanket
- Ciliated epithelium
- Alveolar Macrophages
What is a localised infection?
An infection site that is right on route of entry into the body
e.g. Rhinoviruses, Mammalian influenza viruses, Adenoviruses
What is a systemic infection?
One where the virus enters the body but infects elsewhere
e.g. CDV, Newcastle disease virus, FMD
What protective mechanisms does the Alimentary tract have?
- Mucus
- IgA
- Acid and Bile
- Proteolytic enzymes
What is an acid- labile virus?
One that is unstable in low pH
e.g. coronaviruses, pestiviruses and avian influenza
What is an acid-stable virus?
One that is stable in low pH
e.g. rotaviruses, caliciviruses and enteroviruses
How does infection occur in the urogenital tract?
By small tears or abrasions
How does infection occur in the placenta?
Through placenta damage - can pass through the placenta into the foetus
What can viruses than infect the placenta cause?
- Foetal death/ abortion
- Neonatal death
- Persistently infected animals
What is the incubation period?
The time from virus entry to onset of observable clinical signs
When is the incubation period short?
When clinical signs are due to viral replication
When is the incubation period long?
When the virus must spread before causing disease
What is Dissemination?
Spread from the initial site of infection
How does dissemination occur?
By direct cell to cell contact or
Aided by mechanical action e.g. peristalsis
Spread via blood stream or via nerves
What is viraemia?
Presence of viruses in the blood
Describe dissemination via nerves…
- Uncommon
- Often fatal
- Relatively slow spread
- Axonal or Schwann cells
- May use olfactory nerve endings
What are some viral effects on cells?
Cell death - apoptosis - necrosis Loss of specialised functions Cell fusion Cell Transformation No detectable adverse effects (non-pathogenic viruses)
Disease Results when…
- A sufficient number of essentil, non-replaceable cells are killed
- Rate of cell destruction exceeds maximum regeneration
- Circulatory disturbances due to infection of endothelium
- Epithelial damage allowing secondary invasions
- Interference with normal morphogenesis in the foetus
- Widespread inflammation
- Formation of immune complexes
What happens if the immune response is too strong?
Immunopathology
What happens if the immune response is too weak?
Virus induced cell injury
What is virulence?
The extent to which a virus causes disease in a specified host
What is the period of infectivity?
The period during which an infected individual can infect others
What is the range of period of infectivity?
Short (days) - long (weeks-months)
What are carriers?
Animals that shed the virus in the absence of clinical signs
What are the mechanisms of viral shedding from the respiratory tract?
- Coughing
- Sneezing
- Eating
- Drinking
What are the mechanisms of viral shedding from the oropharynx and intestinal tract?
- Faeces
- Saliva
- — Licking
- — Biting
- — Grooming
What are the mechanisms of viral shedding from the skin?
- Direct contact of small abrasions
- Large quantites of viruses in vesicles
How can viruses spread to other animals?
- Respiratory tract
- Urogenital tract
- Intestines
- Skin
- In milk
- Via blood and tissues
How can viruses infect without shedding?
- By the germplasm
- By consumption of contaminated tissues
Describe persistent infection…
- Latent
- Chronic
- Slow infection
What is the mechanism for persistent infection?
- Infection persists at an immunologically ‘privileged’ or inaccessible site
- It induces immunological tolerance and/or immunological deficiency in the host
What are the steps in viral replication?
- Attachment
- Penetration
- Uncoating
- Synthesis
- Assembly
- Maturation
- Release
What is virus attachment?
The binding of a virus particle to a host cell
What is important about virus attachment and the virus host range?
Virus attachment defines the host range of the virus and its tissue/ organ specificity
What is virus adsorption?
Non-specific binding of the viral particle to the cell membrane
Why are the interactions of virus attachment low affinity but nearly irreversible?
The large number of potential binding sites makes the interactions nearly irreversible
When does viral infection become irreversible?
Once the virus penetrates the cell
How have cell surface receptors been exploited by viruses?
Viruses have evolved to use host-cell surface molecules critical for cellular processes
What are most cell surface receptors made from?
- Cell surface glycoproteins
- Carbohydrate residues present on glycoproteins and glycolipids
What is a specific example of the specificity of receptors to viruses?
H5N1 virus can bind to avian trachea cells but not human trachea cells. but it can bind to human alveolar cells
How does penetration of a virus into a cell occur?
Receptors assist and direct the process of viral entry into the cell
How can penetration occur?
- In Membrane bound vesicles - by receptor mediated endocytosis and fusion with the plasma membrane
- By direct entry at the plasma membrane - direct penetration of the genome
What host cell processes are utilised in the virus entry process?
All signalling processes used by the host cell
Why must surface glycoproteins undergo changes in tertiary or quaternary structures?
This is so generally hydrophobic regions of the proteins can come into contact with the cellular membrane to produce destabilisation and induce fusion with the viral envelope
When does true entry of the viral genome occur?
When the genome enters the cytosol
What occurs in uncoating?
The viral genetic material is released inside the cell
What is complete uncoating?
The capsid of the virus is completely distintegrated
What is incomplete uncoating?
The capsid of the virus partially opens to release viral nucleic acid
What does the synthesis of all viruses involve?
transcription (generates mRNA) and the use of host ribosomes to translate the viral mRNA into viral proteins
What occurs in virus assembly?
The viral nucleic acid is packed into a viral protein coat (capsid) to form a large number og viral particles
What occurs in virus maturation?
The viral particles undergo structural changes in the proteins coat until they become infectious
e.g. glycosylation
What occurs in virus release?
All of the infectious virions are released from the host cell via bursting or budding
What occurs in lysis?
The virus causes the host cell to lyse when it is released
What occurs in budding?
The virus particles bud through the cellular membranes and acquire an envelope in the process
- typical for enveloped viruses
What can be used to cultivate viruses?
- Experimental animals
- Avian Embryos