Module 7 - Microbial Genetics Flashcards

1
Q

What term describes the determination and study of complete genomic sequences?

A

Genomics

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2
Q

The entire genome of an organism is called?

A

Genomic library

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3
Q

In what way have researches relied on genomic libraries for genetic analyses?

A

Determining sequences of the cloned fragments

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4
Q

The basic unit of heredity that occupies a specific location on a chromosome is called?

A

Gene

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5
Q

The entire set of genetic instructions found in a cell is called?

A

Genome

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6
Q

Which sequencing takes advantage of the primer-specific DNA synthesis activity of DNA polymerase?

A

Sanger or dideoxy sequencing

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7
Q

What are the three steps in Sanger sequencing?

A
  1. Cloning of the fragment to be sequences
  2. DNA synthesis
  3. Gel electrophoresis
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8
Q

How does Sanger sequencing differ from PCR?

A

For Sanger sequencing, only a single primer is used in the reaction compared to two

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9
Q

What purpose does Sanger sequencing serve in?

A

Research purposes, such as targeting smaller genomic regions in a larger number of samples
- Low error rate

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10
Q

Which sequencing method is based on the synthesis of a DNA strand, using a template strand to guide the insertions of nucleotides

A

Sanger Sequencing

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11
Q

Which method of sequencing involves first sequencing the cloned DNA as far as possible then, the newly obtained sequence information is used to design another sequencing primer

A

Primer walking

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12
Q

Which method of sequencing is similar to Sanger sequencing in that it relies on DNA polymerase-mediated synthesis of the complementary strand of a single-stranded template?

A

Pyrosequencing

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13
Q

When is a dNTP incorporated into a growing piece of DNA in pyrosequencing?

A

Only if the dNTP is complementary to the template base

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14
Q

What is released when the dNTP is incorporated into DNA, in pyrosequencing?

A

Pyrophosphate (PPi)

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15
Q

Which enzyme converts pyrophosphate into ATP in pyrosequencing?

A

ATP-sulfurylase

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16
Q

After ATP-sulfurylase takes place, what occurs (pyrosequencing)?

A

Production of light

17
Q

Which method of sequencing shears DNA into short pieces and then sequences those fragments from their ends

A

Shotgun sequencing

18
Q

Which method of sequencing is also referred to as next-generation sequencing?

A

High-throughput sequencing

19
Q

Which method of sequencing breaks DNA into short pieces, amplified, and then sequenced?

A

High-throughput sequencing

20
Q

Which method of sequencing does not break down or amplify DNA but instead directly sequence a single DNA molecule?
- DNA read length

A

Third-generation sequencing

21
Q

Advantages of primer walking?

A

Quicker and easier method of sequencing long stretches of DNA

22
Q

Examples of high-throughput sequencing?

A
  • Pyrosequencing
  • Illumina sequencing
  • PacBio
23
Q

When is shotgun sequencing useful?

A

Used to remove errors, fill gaps or correct parts of the sequence that were originally assembled incorrectly

24
Q

What is the study of the entire set of genes in the genome of a cell

A

Genomics

25
Q

What is the study of the entire set of proteins produced by the cell

A

Proteosomics

26
Q

What is the study of the entire set of mRNA synthesized by a particular organism

A

Transcriptomics

27
Q

What is a two-dimensional separation method that separates based on BOTH isoelectric point and mass

A

2D-PAGE

28
Q

What properties of proteins does 2D-PAGE utilize?

A

As they migrate along the gradient, they reach a point on the strip where there is NO net charge
- pH equals pI of the protein

29
Q

What identifies the unique mass-to-charge ratio of proteins that helps reveal their identity by comparison of similar ratios identified for known proteins?

A

Mass spectrometry

30
Q

Two methods used to determine protein structure?

A
  • X-ray crystallography

- Nuclear magnetic resonance