Humans Flashcards

1
Q

What are the key features of the modern human skull

A

Humans have smaller face (than Neanderthal) and relative orthagnathic, face underneath skull with vertical forehead and globular skull – tall skull to length of skull
No contiuous SO torus
Have mental eminence

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2
Q

When was the human most recent ancestor

A

Many hominin fossils date from 400-200kya so will be contemporaneous with sapiens ancestor but none show distinctive features of sapiens

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3
Q

When was there a shift in human technology

A

Major dichotomy between Middle Palaeolithic (Mousterian Mode 3 lithics,
Neanderthal) and Upper Palaeolithic (Mode 4/5 lithics, modern humans) behaviour

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4
Q

What are the key features of the multiregional model

A

1 – time-depth : ~ 2 million years of an evolutionary trend towards sapiens

2 – parallelisms : similar selective pressures (throughout the 2 million years) in different regions of the world, leading to single evolutionary trend

3 – gene flow : besides the parallelisms, 2 million years of isolation would lead to speciation, so gene flow (at rate and frequency x) throughout the whole world would be necessary to maintain all regional populations as part of a single evolving species

4 – chronological synchrony : since gene flow has to have taken place to maintain the species’
genetic unity, it must have also acted as a homogenising force ; therefore, the changes
observed in one region of the world should be soon observed in all regions.

5 – regionality precedes humanity …

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5
Q

What is the mtDNA that showed multiregionalism is wrong

A

First mtDNA study of human variation showed
that:
 All modern humans are genetically closely related to each other
 The last common ancestor of all humans lived recently
 That the root of the modern human genetic tree is in Africa

Cann et al. (1987) Nature

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6
Q

How do “CONTINUITY TRAITS” and difference in selective pressures refute multiregionalism

Use other mammals to refute multiregionalism

A

“continuity traits”: unique features shared by recent East
Asians and Chinese H erectus, and recent Australians
and Javanese H erectus
Different regional impact of climate change: regional
hominin populations under different selective pressures

Of the ~30 regional characteristic Asiatic traits, only 10 actually occurred in the stated regions

this type of multiregional evolution has never been observed in mammals apart from maybe the Javanese rhino

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7
Q

How does sapiens morphology refute multiregionalism

A

All modern humans are morphologically more closely related to each other than to any non‐modern hominin population, independently of which part of the world

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8
Q

How did Gagneux et al. (1999) disprove multiregionalism

A

The ancestral African population was extremely small:
FST = µ 2Ne ‐ ancestral effective population of 15,000‐10,000 people

genetic bottleneck

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9
Q

What is chronological synchrony

A

gene flow maintaining the species’ genetic unity, thus acting as a homogenising force spreading the changes that emerge in one region to the rest of the world

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10
Q

What showed that different hominins chronologically NOT synchronous, refuting multiregionalism

A

• Modern human fossils from Skhul and Qafzeh, Isral
• Discovered in the 1930s
• Several individuals
• Modern human anatomy, but very robust and Middle
Palaeolithic tools
• Originally thought of as “transitional” Neanderthal‐modern
• Re‐dated in the 1980s and 1990s: shown to pre‐date some of
the Neanderthals (Amud, Kebara) in the Middle East

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11
Q

When were the earliest modern humans

A

Earliest modern humans in Africa, 200,000+ years ago

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12
Q

Why do the Denisovans help refute multiregionalism

A

Neanderthals/Denisovans and modern humans are sister clades, with a common ancestor in the Middle Pleistocene

The earliest record of modern human morphology and complex behaviours is in Africa, much earlier than anywhere else in the world

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13
Q

What are the key rebuttals to multiregionalism

A

Neanderthal & Denisovan DNA
different hominins chronologically NOT synchronous
Shared H. sapiens morphology and small ancestral population size
absence of “CONTINUITY TRAITS” and difference in selective pressures
mtDNA

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14
Q

Give Fossil ancestral “candidates” in Africa for most recent human ancestor

Give the ages in kya

A

Morocco: Jebel Irhoud ~315

South Africa:
Florisbad ~280
naledi ~260

East Africa:
Kabwe (Zambia) ~300
Eliye Springs (Kenya) ~360
Ndutu (Tanzania) >400

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15
Q

What has changed in the evolutionary geography of Homo sapiens

A
  1. Time
    • ~300,000/200,000 years ago to the present
  2. Space
    • from Africa to worldwide
  3. Demography
    • from 10,000‐30,000 people to > 7,000,000,000
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16
Q

Describe the theory of African multiregionalism for human origins

A

Requires extremely large estimates of ancestral effective population size as it
incorporates ancestral lineages across sub‐groups

  • Limited pan‐African population structure
  • Inconsistent with range of estimates of Ne (9,000‐30,000)

• If Ne reflects ~10% of census size, the maximum estimate (32,500) =1.4
individuals/100 km2

 lowest recorded: Dobe !Kung ~6.6 x 
100 km2; Hadza ~30 x 100 km2 - no HG communities are as sparse as necessary
DEMOGRAPHICALLY UNLIKELY
INCONSISTENT WITH HOMININ DIVERSITY IN 
AFRICA 400‐200 Ka
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17
Q

What are the features of the single origin range expansion with local extinctions model of human diversity

A
• Genetic variation should decline with 
distance from one source African 
population [1]
• Most genetic lineages should originate from 
a single ancestral African population 
(despite incomplete lineage sorting which 
would lead to some basal lineages 
elsewhere) [1]
• Predicts large expansion within Africa prior 
to out of Africa
 Consistent with range of estimates of 
Ne (9,000‐30,000) and KhoeSan as the 
most divergent human population 
with largest Ne [2‐5]
DEMOGRAPHICALLY LIKELY
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18
Q

What are the features of the single origin range expansion with regional persistence model of human diversity

A

• Clinal patterns of genetic diversity and coalescence from a single African source [1]
• Complex phylogeography, with deep coalescent events in regions outside the
source (reflecting gene flow)
• Consistent with recent findings that ~10%
divergent ancestry in W Africa [2,3] and the
deeply divergent Y‐chromosome lineage in
W Africa (tMRCA ~250,000 yrs; 4]
DEMOGRAPHICALLY LIKELY, BUT NEEDS MORE
DATA

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19
Q

What are the features of the archaic hominin admixture in Africa model of human diversity

A

• Predicts “archaic” African hominin
admixture into living populations [1] – not
yet identified, but there are genomic
outlying regions in Africa [2,3] with very old
coalescent ages (~1 Ma in pygmies – 3)
suggesting deep population structure
 Consistent with the age of H naledi, for example
 But poor fit between demographic
models and interpretation of
“introgressed” segments
NEEDS MORE DATA

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20
Q
  1. What is the Mode 3 hypothesis? What is the recent genetic evidence for it?
A

Humans and neanderthals doing similar technology unless it happened before split Neanderthal mtDNA closer to modern humans than Denisovans – dispersal of humans out of Africa 300-400kya and mixed with neanderthals and gave them Y chromosomes (both male and female admixture) making them closer to us than we are to DEN
Further mixing 200kya during a green sahara event – recurrent mixing of western Eurasians and modern humans

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21
Q

Where does the idea of African multiregionalism stem from

A

the presence of regional geographic variation in the African archaeological record by 300kya, the morphological diversity of the African fossil record between 300 and 100kya, and the presence of modern, derived morphological features in divergent regions of Africa
Together, these findings inspired the hypothesis that populations across Africa were all connected to each other. This model states that migration across the continent is more parsimonious than independent convergence of anatomical features and archaeological innovations

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22
Q

Explain the Single Origin Range Expansion with Local Extinctions

A

Many near modern human populations exist in Africa since 200kya

Modern humans originated from a single population in Africa (south or east) that expanded and outcompeted other groups of near modern humans, or expands into regions left empty by these other groups going extinct due to external factors.

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23
Q

How does the Single Origin Range Expansion with Regional Persistence differ from the Single Origin Range Expansion with Local Extinctions model

A

Again gives importance to a single population in a specific area of Africa, but allows for gene flow between this group and other near modern human groups

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24
Q

Explain African multiregional theory

A

Modern humans originate from a pan-African population

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25
Q

Describe Archaic Hominin Admixture in Africa model of human origins

A

Modern humans evolved in parallel with other hominin species (eg naledi) and there is gene flow between species

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26
Q

When are the earliest modern human fossils from

A

from Ethiopia, 200 – 160 Kya –
derived universal traits of
Homo sapiens, but very
different from each other

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27
Q

How big was the ancestral human population

A

~ 10,000‐15,000 people

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28
Q

Is the Kabwe fossil modern human

A

No

Very different to modern humans – synchronicity (300kya) – closer to mid-Pleistocene hominins
Tall, pronounced SO torus, bregmatic eminence, enormous face

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29
Q

Is the Florisbad fossil modern human

A

Very similar to modern humans but not got full package of traits

275kya

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30
Q

When is naledi from

A

250kya - v primitive hominin

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31
Q

What is one of the first modern human skulls

A

from Monokibish, 200kya

chin
high globular skull

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32
Q

What is the importance of Skhull

A

Modern features
Already out of Africa
125-100kya

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33
Q

Describe the quantification of human’s globular head

A

• A quantitative measure of the globular modern human head
• Genetic association of values of this “index of endocranial
shape” amongst Neanderthal introgressed genomic fragments in the genomes of 4468 Europeans
• Key SNPs correlations associated with reduced globularity
• Correlated SNPs: affect neural expression of 2 genes linked to neurogenesis and myelination

Gunz (2018)

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34
Q

What actually is a human, from a palaeontological perspective? Which features are autapomorphies? (6)

A

Large brained hominin

Tall and narrow

globular cranium

reduced cranial superstructures

small faced under vault

mental eminence

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35
Q

Which human populations are likely to have been the earliest to diverge

A

Khoisan groups in southern Africa:
The most genetically differentiated living
human population, followed by the Hadza (TZ) and the Pygmies (Mbuti, Efe, etc)

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36
Q

What is the paradox of the modern human LHS

A

 Relatively higher energy budget and reproductive output than apes (“fast”)

 Long juvenile period and lifespan (“slow”)

Homo sapiens evolved a unique life‐history amongst all hominins, probably driven by hypothalamic output from the brain - indicated by Retzius Periodicity

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37
Q

What is a way to assess regulation of LHS pace

A

Retzius Periodicity (RP): number of days between the deposition of successive long‐period growth lines in teeth (striae of Retzius in tooth enamel)

 histological manifestation of a neuroendocrine biorhythm (Havers‐Halberg oscillation)

 closely related to body mass and BMR, role in regulating pace of life‐history in mammals

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38
Q

How does the LHS of other Homo vs sapiens differ, considering energetics, ecology, and behaviour?

A

other Homo: large size, encephalised, fast growth

• Energetically very demanding – diet shift, carnivory
• Ecologically effective – early independence, predator risk minimisation
• Socially and behaviourally challenging – likely increase role of social cohesion, provisioning, innovative
solutions (cooking?)

Homo sapiens: large size, encephalised, slow growth

  • Energetically efficient – budgeted development through longer ontogeny
  • Ecologically challenging – longer dependence on mother, big risk of predation

• Socially and behaviourally very demanding – provisioning of mothers with dependent children, social
cohesion and belonging, major pressure on technological solutions, increased dependence on learning
social norms and skills, increased importance of social memory

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39
Q

Where are Mode 3 and 4 technologies found

A

Mode 4: Only seen in parts of Eurasia
NOT in Australia

Mode 3: seen in Neanderthals and first modern humans in Africa

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40
Q

What happens between 300-400 Ka?

A

Environmental change extreme aridity
Turnover in fauna – perhaps because of humans becoming a mega-predator
– middle stone age

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41
Q

What is modern human behaviour

A

All living humans have ‘modern behaviour’

‐ Complex cognition symbolism, abstraction

‐ Complex behaviour, altruism, cooperation, teaching, etc.

‐ Complex societies, kinship/non‐kinship
networks, shared heritage, norms

‐ Cumulative culture

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42
Q

Why do advanced stone tools suggest increased cognition

A
  • Production of a core implies pre-preparation so that when struck a particularly shaped flake will come away – level of abstraction (also seen in N)
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43
Q

What is the importance of ochre

A

Symbolism – neanderthals liked shells of particular colours – also in human s
Ochre processing workshop in Qafzeh, Israel, 93kya
Found a lump of ochre with pestle still inside it
Ochre also used as mastek fro hafting artefacts onto handles – may be practical not symbolic
But pervasive presence of red ochre particularly (not seen in N) suggests they were choosing a particular colour scheme

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44
Q

How do early human ornaments compare to those of Neanderthals

A

N has only 1 case of necklace
Many cases in humans from 100kya onwards – why?? – form of singalling personal and group identity (cf football t-shirt – display of support; married woman with ring etc)

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45
Q

How long ago can art be seen

A

Blombos, South Africa
Middle Stone Age layers
~70,000 yrs

– deep intentional zigzag engraving – aesthetic or communication – major change in symbolism

Lion-man (40kya) -> clear display of abstraction/ imagination

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46
Q

Give examples of the emergence of more complex behaviour in the Middle Stone Age

A

Pinnacle Point, South Africa, 164kya: evidence for early use of marine resources (shellfish) and production of microliths (Marean et al. 2007)

Ethiopia, 160 kyr: evidence
of mortuary behaviour. White et al (2003)

Qafzeh 11 burial, Israel,
120 kry: complex
burial/grave goods

Increased distance travelled for raw material before 300kya – trade?
Grass bedding at back of cave – 200kya
Different ways to make necklaces look by changing string

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47
Q

What is the importance of the Herto child

A

160kya – polished skull from being passed around
had associated antlers

also Adult at Herto – cut marks - defleshed

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48
Q

Why is modern human technology different

A

Humans are characterized by changing culturally very quickly

Stone tools lasted 1.5My – cf. technology now

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49
Q

Humans are characterized by changing culturally very quickly. Can we see this in the record

A

South Africa HP culture (Howiesons Poort, mid stone age tradition, see Jacobs 2008 paper) lasted only 5ky – came, succeed, then disappeared

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50
Q

What is the importance of cumulative culture

A

social networks increase efficiency of knowledge transfer – investment in friendship from early childhood – these friendships are more important predictors of shared knowledge than family ties – peer group is important aspect for cumulative culture

Multi-level sociality increases rate of social evolution – high mobility between camps – lots of knowledge transfer despite low population density

Our slow LHS requires specific social structures for interdependence on other people and communities – evolution of modern behaviour evolved so will not suddenly appear as a package in the record

(Migliano et al. 2017)

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51
Q

Give the dates for the following transition events in sapiens’ history

The Holocene Filter 
Structuring 
Dispersals 
Expansion 
Origins
A
The Holocene Filter (15 – 0 Ka)
Structuring  (45 – 25 Ka)
Dispersals (70 – 50 Ka)
Expansion (130 – 100 Ka)
Origins (240 – 200 Ka)
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52
Q

When did Expansion occur in human history

What were the associated climatic events

A

130-100kya

135‐128 Ka: climatic shift from hyper‐glacial to very 
warm conditions (Green Sahara)
• 128‐72 Ka: long and complex interglacial, MIS5
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53
Q

What are the associated modern human fossils found during sapiens’ expansion

A

Modern human fossils bsaically found across Africa & the Levant (from Israel to Sudan to South Africa):
 Singa, Sudan (133 Ka)
 Mumba, TZ (130‐109 Ka)
 Aduma, Ethiopia (105‐79 Ka)
 Klasies River Mouth, South Africa (115‐60 Ka)
 Skhul & Qafzeh, Israel (130‐90 Ka)

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54
Q

What were the Skhul fossils originally interpreted as

A

modern human‐Neanderthal hybrids, more recent than Neanderthals in the Levant

1987: Dated to 80‐130,000 yrs (ESR, TL), older than the Levantine Neanderthals

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55
Q

What was the first key sapiens dispersal OoA

A

130-80kya
130‐80 Ka: modern humans in the Levant (Skhul & Qafzeh) but reached as far as Australia
=> Archaeological evidence: Fuyan cave – teeth of modern humans 80kya;
Madjedbebe Rockshelter in Australia - stone tool technology from middle stone age of Africa

70‐50 Ka: Neanderthals in the Levant
(Kebara, Shanidar, Amud, Dederiyah)

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56
Q

Why do genetics suggest the sapiens dispersal OoA 130kya was only small (2)

A

Neanderthal born in last 100ky has modern human genes in genome from population who dispersed before most modern Eurasians – grew up Neanderthal – if humans assimilated into Neanderthals that suggests it was not a major movement out of Africa

Genetic tree of humans very skewed – most people come from an explosion of diversity that occurred very recently – very few people can trace their ancestry back to the root of the tree (all in africa – hunter gatherers – Khcesan from southern Africa, and Sandawe)

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57
Q

Are all click languages related?

A

No
– not closely related – very distant in fact – relics from time of hunter gatherers in Africa before the expansion of farmers and pastoralists – early modern humans used clicks?
Hunter gatherers would have encountered archaic hominins and these would have been assimilated into human community

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58
Q

When do most people share a LCA from

What was this period marked by, population-wise?

A

80-70kya

marked by population contractions and regionalization within Africa, so we do not know where this ancestral population lived

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59
Q

When was the main sapiens dispersal OoA

When did this dispersal reach Australia

Was there any admixture

A

70-50kya

by 50kya

The dispersal involved admixture with both DEN and N in Eurasia, and possibly with archaic human populations in West Africa.
this is mostly from mtDNA research as there are v few fossils

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60
Q

How do tools reveal the expansion and contraction of sapiens in Africa

A

tech in one area differs from the others – ochre and shell beads in Morocco and south Africa BUT then in south Africa we see the Stillbay (shift in tech) while in North africa we see Aterian tanged points – regionalization 100-70kya

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61
Q

When was there a megadrought in East Africa in last 150kya

A

East Africa had a megadrought between 135-75kya – asynchronous with higher latitudes

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62
Q

When were the key splits since Neanderthal, Denisovan and ancient modern human LCA

A
  1. Split of AMH x NEA/DEN lineages 603 Ka [496‐797 Ka]
  2. Split of NEA x DEN lineages 426 Ka [333‐539 Ka]
  3. Split of AMH x XAf lineages 528 Ka [230‐700 Ka]
  4. AMH LCA
     XAf introgression:
    3.8% Khoisan; 3.9% Mbuti; 5.8% W Africa
63
Q

Where and when did the ancestors of today’s living people that have fragments of Neanderthal DNA meet those Neanderthals?

A

Must happen before humans left Africa bc all non-africans have it – occurred right at point of leaving – exchange happened as they disperse into middle east before they separated into different populations

64
Q

What is the multiple dispersals model

what is the evidence (4)

A
Northern Dispersal : 
55‐45,000 yrs
and 
Southern Dispersal : 
70‐50,000 yrs

Evidence:
The morphology of Australian aborigines – today and in the past (Multiregional Model,
etc.)

• The archaeology of Sahul,
as well as of much of
Southeast Asia (not part of the typical ‘Upper
Palaeolithic)

• The (potential) persistence 
of ancestral phenotypes in 
South Asia, Southeast Asia 
and Australia (for example 
dark skin)

• Modern humans in Southeast Asia and Australia before than Europe

65
Q

What is the evidence against the multiple dispersals model

A

the mtDNA data does not back this up – more likely to be a single very rapid dispersal – coastal route had too many barriers to be sustainable
Different studies show different numbers of dispersals about Australian aboriginals

66
Q

What is a key difference between Australo-Papuan genes cf. Eurasia populations

A
  • Denisovan‐like genes found today in Australo‐Papuan populations
  • The % of Denisovan genes among Australo‐Papuans (4‐8%) is much greater than the % of Neanderthal genes among Eurasians in general (1.5‐2%)
  • Admixture took place before the founding of Australia and New Guinea, 60-50kya
67
Q

Give the key aspects of 70-50kya

A

period to which the vast majority of living humans can trace their ancestry
• Period of regionalisation in Africa
• Main ‘out of Africa’ dispersals
• Unresolved source of ‘out of Africa’ populations
• Unresolved number and routes of dispersal

68
Q

By 45kya, where are sapiens living

How had this changed 5ky later

A
By 45 Kyr, modern humans are in:
 Western Asia
 Eastern Europe
 Southeast Asia
 Australia

By 40 Kyr, they are also found in:
 Western Europe
 China
 India & Sri Lanka (from the archaeology)

69
Q

Around 40kya What were key events happening to different populations (4)

A

• Shared ancestral Neanderthal admixture
subjected to population‐specific drift

• Population‐specific admixture with Denisovans
and related groups

• Localised selection during climatically variable
MIS3

Transition from Middle to Later Stone Age in Africa

70
Q

What did SE Asia look like 45kya

A

sea levels were low so SE Asia was not land with lots of islands but actually one exposed land continent (Sundaland) and Australia and Tasmania and Papua New Guinea formed another landmass (Sahul) – they were separate with an ocean

71
Q

What kind of culture has been discovered 45-25kya in Russia?

A

huts 35000 years old in Russia, burials of kids covered with bones and beads – period of cultural richness with instruments and figurines (found from Russia to spain)

Genomes well preserved bc cold environment
The genomes from early Upper Palaeolithic people from Ust’Ishim (~45 Kyr) and Kostenki (~36 Kyr), western Russia, shows the structuring of the early Eurasian modern populations
Subsequent Neanderthal admixture events
Population extinctions

72
Q

What kind of culture has been discovered 45-25kya in Eastern Europe?

A

Romania: 35kya, strange phenotype – genome descended from human Neanderthal hybrid – hybridization had occurred only 4-6 generations before this individual’s death – further encounters at edges of human expansion
Look at Hublin 2015 paper on Western colonization

Bulgaria – 45kya – teeth and mtDNA – all early modern humans – mtDNA shows Eurasians related to people across the world

73
Q

How similar are human genomes in China to the rest of the world

A
  • The 40,000 yr old Tianyuan fossil’s genome is part of the modern human clade, with an estimated last common ancestor in Africa 150,000‐200,000 years ago
  • Similarly to other Eurasians, it has 1.5‐2 % Neanderthal genes
  • The % of Neanderthal genes is no greater than in present Han Chinese

• It has NO Denisovan genes
Did they just not meet DEN or was the meeting anatagonistic?

74
Q

What happened with technology 45-25kya

A

Middle stone age tech is abandoned and increasing use of microliths
Icnreasinf use of bone and egg shell
Used as measure of CULTURAL diversity

While in western Africa, middle stone age tech used until 10kya – populations with a deeper ancestry survived until very very recently

Hofmeyr fossil – SA – 36kya – only fossil of its age – closest relatives are European not other south africans

Sterkfontein – limpet size – size responds directly to predation – LSA predation increases significantly thanks to improved to tech

MSA -> LSA in kenya – maps transition from shells to ostrich egg to make decoration to make identical beads with notation - enhanced group identity

75
Q

When do the oldest needles date to

Why is this important

A

• oldest ~45‐40 Ka, Siberia & China – possibly
independently
• Western Europe: during the Solutrean (~20kya)

Make the difference between hanging clothes on yourself and sewing them up – big thermoregulatory difference – enhances survivorship

76
Q

What happened 25-15kya

A

The Last Glacial Maximum (LGM)

Population contractions and extinctions 25,000 – 15,000 years ago

77
Q

What allowed mass expansion after 15kya

A

After drop in temperature after the Younger Dryas Cooling, temperature has existed at a relatively stable level – post glacial improvement led to mass expansion

‘Post‐glacial’ improved environmental conditions and increased competition
15,000 – 8,000 years ago

78
Q

What are some key questions about the first human occupation of America

A
  • 3 migrations or many
  • Ice‐free corridors or coastal routes
  • Palaeoindian ancestry or population replacement
  • Megafauna overkill or climatic catastrophes
  • One linguistic mega‐family (Amerind) or many
79
Q

What can we tell about the location of origin populations from Native American genomes?

A

Some have a small part of Australasian ancestry
Relate to Paleolithic Siberian populations and east Asian too
Palimpsest

80
Q

Who first occupied the Arctic

A

first inhabited by PaleoEskimos who populated from Siberia to Greenland but these are not ancestors of modern Inuit, who descend from the Thule who replaced PaleoEskimos in last 1kya

81
Q

What happened to the climate in the Late Pleistocene and Early Holocene

What did this lead to

A

• Climatic instabilitiy followed by peak: hotter
than present, high lake levels
• localised resource pressure
….. plant and animal domestication …

82
Q

When did plant and animal domestication occur

A

Plant and animal domestication developed in at least 6 parts of the world independently between 12,000 and 4,000 years ago.

83
Q

What is one possible answer to the question “why were plants and animals domesticated only in the last 12,000 years?”

A

Maybe because it was only at this point did population density reach high enough where you can trade high quality food of a hunter for low quality food of a farmer’s carb rich diet

Richerson (2001) argues however, that agriculture was impossible before the Holocene – levels of CO2 in Holocene and water levels made agriculture possible

84
Q

When was the earliest agriculture and bread making

A

• Tel Abu Hureyra (13‐9 Ka BP):
earliest agriculture in the world

• Shubayqa 1, Jordan(14.5 Ka BP)
– earliest bread‐making

• Raqefet Cave, Israel (13 Ka BP) –
oldest beer

85
Q

what about the question “what came first, farming or sedentism?”

A

Natufians – last hunter gatherers in Western Asia – lots of groups around then who were becoming more and more sedentary – Natufians never became sedentary but did exploit cereals using stone tools like sickles

86
Q

What special type of farmer took place in East Africa during the last Green Sahara event

A

East African ‘Aqualithic’ –
semi‐sedentism amongst fisher foragers
during the last Green Sahara

semi sedatism – foraging – water ways connecting west African lakes to the Atlantic – harpoons from bones and ivory – semi sedentary without domesticating plants or animals

87
Q

How does agriculture affect number of surviving offspring

What does this mean

A

Phylogenetically controlled (Sellen & Mace)
10% dependence upon agriculture leads to 0.2
extra offspring per female

According to subsistence strategy agriculturists only have slightly more babies than hunter-gatherers (6.6 and 5.4 respectively)
BUT
Infant mortality is very different – for current HG it is 43.7% - critically issue related to foraging – give farmers the advantage

Current exponential growth characterizes humans in the last 10ky thanks to farming

88
Q

How did the agricultural revolution affect health

A

Sedentary – live near your own waste and stagnant water and increased population density (pathology) and worse diet (malnutrition)
Can be seen in the drop in stature in the Neolithic due to malnourishment BUT this didn’t last

89
Q

Discuss lactose tolerance

A

Cow domestication – cultural and bio evolution happening together – only 1/3 of world are lactose tolerant – dairy farmers of Europe at this time
Pastoralism took over northern Africa in a big way

90
Q

How do cows differ in Europe vs Africa

A

First cows crossed the Levant and are related to European cows but many cows are the humped cows from India – African cows are a hybrid of the 2 – more resistant to some flies,

underscores expansion of pastoralism

Africans have 3 different mutations (cf 1 in Europeans) for lactose tolerance

91
Q

Is lactose tolerance the same for all who have it

What does this suggest

A

No

• Europeans: mutation in LCT gene (T‐13910)
• Africans: (at least) 3 other different mutations, on
highly differentiated, geographically restricted
haplotype backgrounds
 independent convergent evolution of lactose
tolerance under strong selective pressure for adult
milk consumption

92
Q

Discuss the genetic patterns in Australasia

A

Deep ancient population – some have become pygmies and some have developed very dark skin for example
Massive expansion in last 3ky bringing pigs etc from Taiwan – mixed with Papuans and spread downwards so most peoples of different islands here look very similar
Went into the pacific and also west to colonise Madagascar

93
Q

Summarise the evolutionary relationship between farming and linguistic diversity today.

A

Farmers were the biggest demographic input into Europe in the last 10ky
BUT this was superseded during the Bronze Age via a population from Russia (Yamnaya) – complete replacement of Neolithic genome in the Bronze age – these brought Y. pestis – first plagues – layered history

Expansion of Bantu speaking farmers replace entire population of sub-Saharan Africa (basically) – this process of homogenization also occurred across the world both via genetics (population replacement) and culture (others picking up the language)

94
Q

What was found from studying Y pestis’ genome

A

oldest direct evidence of Yersinia pestis identified by ancient DNA in human teeth from Asia and Europe dating from 2,800 to 5,000 years ago.

plague infection was endemic in the human populations of Eurasia at least 3,000 years before any historical recordings of pandemics.

95
Q

How does the linguistic pattern in Africa reflect its diversity

A

Among the 50 linguistically most diverse countries in the world (of a total of 218 countries), 29 are African

96
Q

How long did people have dark skin in Europe

A

Hunters of Europe still had dark skin 7kya – then come the farmers

97
Q

What happened when HGs met farmers in South America

A

maku (hunter gatherers – symbiotic relationship with Tukano) and tukano (farming community
o Tukano are a caste society and now have a caste called ‘Maku’
o Assimilation – Tukano will take Maku women as wives

o Selknam
 Fully nomadic
 Tall strong and robust – similar to arctic
Search for gold led to their genocide

98
Q

Give examples of what happened when farmers met HGs in East Asia

A

o Yayoi
 Related to prehistoric population
 2kya – rice farmers from korea invaded and took over islands
 Now Yayoi only exist in the remote islands to the north of Japan
 Survivorship only possible through isolating themselves
 Look very different to traditional idea of Japanese people
 Tattooing of mouths

99
Q

Give examples of what happened when farmers met HGs in Australia

A

o Never any farming
o Aboriginals remained hunter gatherers until recent past
o But have suffered from economic expansion of farmers/ western colonisers
o Absolute impact – extinction of cultures and languages

100
Q

Give an overview of the demography of language

A

347 (or approximately 5%) of
the world’s languages have at least one million speakers and account for 94% of the
world’s population.
The remaining 95% of
languages are spoken by only 6% of the world’s people

101
Q

What was the 5th transition H sapiens underwent

A

The Holocene Filter
The 5th transition: 15,000‐present
Change in global diversity, expansion of post‐glacial foragers and Holocene food producers

102
Q

What is the Holocene Filter

A

the mechanisms by which human diversity throughout the world decreased as a
consequence of the differential expansion of a few populations since 15,000 years ago
‘population factories’

103
Q

Give examples of the human palimpsest that has appeared since the Holocene filter

A

contrast between large agricultural societies and neighbouring HG societies that look very different

eg Japan, Borneo and Philippines

104
Q

Explain the importance of extinction in biodiversity

A
  • Extinction plays as important a role in the structure of biodiversity as speciation
  • The probability of extinction is not related to phylogenetic proximity

• Extinction is a key link between micro‐evolutionary process and macro‐evolutionary
pattern

105
Q

How do pygmy populations come about?

A

Pygmies: males with mean height of <150cm, happened independently – happened with previous hominins – has always been an adaptive option –

different body proportions due to different mutations:

eg Congo have mutation in IGFR so no adolescent growth spurt,

while those in Philippines are shorter due to a change in timing of reproduction, reproducing early due to early adult mortality

106
Q

What are the earliest undisputed remains of modern H sapiens

Ages?

A
Omo I (200ka)
Herto (169ka)

both have tall skull vault and a chin

107
Q

How does Marta place the origin of Homo sapiens

A

used phylogenetic modelling to reconstruct vLCA

While Florisbad shares the most phenotypic affinities with the computed vLCAs, some of the LMP fossils present a different phenotypic profile which supports the recognition of several African hominin populations and lineages

support the view that H. sapiens’ origin may be the result from the coalescence of South and, possibly, East-African source populations. In this scenario, the North-African hominins may represent a population which introgressed into Neandertals during the LMP

108
Q

What environmental changes would have led to diversity in early sapiens

A

current evidence suggests a dynamic biogeographic period driven by pronounced shifts in aridity and temperature, during which drift and selection would have acted to create diversity at population and potentially species levels

109
Q

Why does Marta attribute extinction of lineages eg naledi to

A

harsh climatic conditions of Marine Isotope Stage 6, which may have triggered local extinction events, and to competition with expanding groups of H. sapiens during the early phases of MIS5

110
Q

What does Marta suggest Irhoud specimens represent

A

represent local descendants of a population that dispersed OoA during a Green Sahara event ~340kya and introgressed into the European Neanderthal lineage

111
Q

What does Lahr’s 2019 study suggest about the geographical origins of sapiens

A

350-200kya: phenotypic diversification forming local morphs of pre-sapiens

200-100kya: fragmentation and expansion leading to anatomically modern humans
Not all regional variants would have contributed equally - expansion with introgressions, extinctions and founder effects

112
Q

To what extent was the Neolithic demographic transition a life history trade-off

A

Page et al. (2016) conducted blood composition tests in 345 Agta and found that viral and helminthic infections as well as child mortality rates were significantly increased with sedentarization. Nonetheless, both age-controlled fertility and overall reproductive success were positively affected by sedentarization and participation in cultivation

suggest that the spread of agriculture involved a life history quality–quantity trade-off whereby mothers traded offspring survival for increased fertility, achieving greater reproductive success despite deteriorating health

Phylogenetically controlled (Sellen & Mace, 1997)
10% dependence upon agriculture leads to 0.2
extra offspring per female

According to subsistence strategy agriculturists only have slightly more babies than hunter-gatherers (6.6 and 5.4 respectively)
BUT
Infant mortality is very different – for current HG it is 43.7% - critically issue related to foraging – give farmers the advantage

113
Q

Give local genetic adaptations that help humans globally

A

Lactose persistence
Diet
Endemic pathogens
High altitude

114
Q

When did lactose persistence emerge

A

Europe: 9kya
E Africa: 5kya

this is convergence - absent in early Neolithic Europeans

115
Q

How have some humans adapted to high altitudes

A

selection in genes involved in hypoxia-inducible factor pathway

Tibet: strongest selection signal at EPAS1 (transcription factor in HIF pathway)
May have originated from Denisovan introgression

116
Q

How have certain human genes been affected by diet

What are the implications on modern populations

A

Samoan adaptation to fast-feast lifestyle

mutations in CREBRF where Samoan variant decreases energy use and increases adipose storage

> 80% of Samoans are overweight or obese

117
Q

Which migration event most influenced the genomic of Africa?

A

movement of Bantu-language-speaking populations from their homeland in the highlands of Nigeria and Cameroon into much of sub-Saharan Africa in the past 4 kyr

118
Q

Which extant populations reflect the deepest split between human populations

A

click-language-speaking San populations of southern Africa (160-110kya)

interestingly, other click-language populations eg Hadza display limited genomic affinity with these San populations

119
Q

Give 3 key genetic signals indicating African origins of sapiens

A

1) lower levels of diversity and 2) higher levels of linkage disequilibrium in non-African populations
3) all non-Africans have 2% Neanderthal ancestry (50-65kya)

120
Q

Give a very brief overview of the OoA event

A

all contemporary non-African peoples branched off from the same ancestral population that left Africa, possibly with minor genetic contributions from an earlier modern human migration wave into Oceania

immediately separated into 2 waves one founding Australasia and New Guinea and the other contributed to the ancestry of present-day mainland Eurasians

121
Q

How does the amount of Neanderthal DNA differ between populations

What does this reflect (3)

A

East Asian people have about 20% more Neanderthal sequences com-pared to European people,

may reflect the effects of natural selection, the occurrence of further admixture events in the ancestors of present-day East Asians after the population split from Europeans or the dilution of Neanderthal ancestry in Europeans owing to admixture with populations that did not contain considerable levels of Neanderthal sequences.

122
Q

Give an example of an individual who suggests Neanderthal introgression was complex

A

SNP genotyping in an early mod-ern human from Romania who lived about 40 kyr ago provided further evidence that introgression occurred at several times and locations in Eurasia

(Nielsen, 2017)

123
Q

How early were anatomically modern humans in Europe

A

43kya

124
Q

What were the 3 colonisation events of Europe

A

first Europeans 43kya

genetic turnover with Last Glacial Maximum

When LGM passed and Neolithic culture emerged in Fertile Crescent.
Neolithic farmers from Anatolia colonised Europe and had reached Iberian peninsula by 7kya - this was mass migration of farmers NOT just cultural spread

Yamnaya herders from the Caspian steppe migrated to central Europe ~4.5kya

(Nielsen, 2017)

125
Q

What does genetic diversity look like in Europe today

A

decreasing diversity with increasingly northern latitude

after multiple waves of migration, gene flow became limited by geography and culture

126
Q

How was Asia colonised

A

2 waves
One wave included the ancestors of Australians and the Papuan people and the other included other ancestors of East Asians, with admixing between the two

(Nielsen, 2017)

127
Q

Describe the first wave of colonisation in Asia

A

5kya - expansion of Yamnaya herders

2.5-3.5kya - Yamnaya were replaced by Sintashta people from Urals and Europe

(Nielsen, 2017)

128
Q

What does genomic data suggest about the peopling of Sahul

A

47.5-55kya:

1 extensive migration followed by a divergence of the Papuan and Aboriginal Australian ancestral population and further genetic diversification in the Aboriginal Australian population

(Nielsen, 2017)

129
Q

Is there evidence for Oceanian individuals migrating into Americas before Europeans

A

yes

human remains from Brazil that date to around AD1650, and therefore pre-date the recorded trade of Polynesian slaves to South America, shows that the individuals are closely related to contemporary Polynesians.

GWAS of Easter Island inhabitants suggests early contact between Polynesians and Native Americans hundreds of years before Europeans reached the islands (Nielsen, 2017)

Chilean chicken aDNA suggests introduction of chickens pre-Columbus from Polynesia (Storey, 2007)

130
Q

What is the earliest well-characterized archaeological assemblage in the Americas?

A

emergence of the Clovis complex (around 12.6–13 kyr ago)

131
Q

When did a biologically viable corridor from Beringia (now northeastern Siberia and northwestern North America) to the southern parts of the Americas.

What is the importance of this

A

from 12.6kya

makes it an unlikely early route for the southward migration of pre-Clovis and Clovis groups

a movement towards the south along the west coast of North America that occurred more than 14 kyr ago may have been possible

132
Q

Who are Native Americans descended from

A

On the basis of cranial morphology and lithic analysis, it has been proposed that early Americans were not direct ancestors of con-temporary Native Americans, but instead were related to Australo-Melanesians, Polynesians, the Ainu people of Japan or Europeans who were later replaced or assimilated by ancestors of Native Americans from Siberia

BUT

  • genome from 12.6kya in Montana is directly ancestral to Native Americans
  • Kennewick Man’s genome suggests the same

(Nielsen, 2017)

133
Q

What is one of the most obvious adaptations that sapiens’ genetics has undergone since OoA

A

adapting to changes in UV exposure

Populations that live near the equator have dark skin to protect against skin damage and the photolysis of folate by ultraviolet radiation

at higher latitudes, lighter skin is thought to be an advantage that enables more efficient vitamin D production (affecting genes eg MATP)

134
Q

Give benefits of human introgression with other hominis

A

adaptive EPAS1 haplotype in Tibetans seems to be introgressed from Denisovans

selection on the major histocompatibility complex genes and the gene MC1R is probably facilitated by introgression from Neanderthals

135
Q

How high might Neanderthal introgression have been

Why does it appear lower than this

What is an implication of this

A

as high as 10%

substantial amounts of Neanderthal DNA was purged by selection
high inbreeding in Neanderthals

Neanderthals may not have become extinct because they lacked suitable ecological adaptations or through competition or warfare with humans. Instead, they may simply have been absorbed into the human species.

(Nielsen, 2017)

136
Q

What is the trend in face shape from Middle Pleistocene to modern day

A

a temporal trend for brow ridge reduction is apparent from the late Middle Pleistocene (pre–80 Ka BP) to Late Pleistocene (post–80 Ka BP)samples and continuing to the recent human samples (increasing feminisation with time)

significant reduction in androgen-mediated craniofacial masculinity between the MSA/MP and LSA/UP, coincident with genetically and archeologically visible increases in human population size and density and with a markedly increased rate of cultural evolution

137
Q

What have the selection processes been to reduce human face masculinity

A

educed aggressiveness and enhanced social tolerance may have had direct reproductive benefits in the later part of the MSA and MP

more tolerant males may simply have enjoyed a greater number of cooperative exchanges with others, which would have served to improve foraging return rates (through cooperative foraging and through shared innovations in subsistence technology) and reduce the risk of foraging shortfalls (through food sharing)

may also be a honest signal - increased social skills and paternal care

138
Q

What are the key phases of human diversification

A

(i) origins of the species,240–200 ka;
(ii) at the time of the first major expansions, 130–100 ka;
(iii) during a period of dispersals, 70–50 ka;
(iv) across a phase of local/regional structuring of diversity, 45–25 ka;
(v) during a phase of significant extinction of hunter–gatherer diversity and expansion of particular groups, such as farmers and later societies (the Holocene Filter), 15–0 ka

139
Q

Why is it believed East Africa is the origin of Homo sapiens

Why is South Africa less likely

A

consistent with some genetic studies, and supported by models of the role of refugial networks during climatic instability

SA is suggested by some genetic studies but these are strongly influenced by the current distribution of the few surviving African hunter–gatherer populations

140
Q

What location acted as a refugia during MIS 6

What happened after tis

Give study

A

lakes in Eastern Africa acted as oases during the increased aridity of MIS 6/ ~200kya
hominins were restricted to lake margins

climatic amelioration 130kya, leading to population expansion

Basell (2008)

141
Q

When was the expansions phase of human diversification

Give fossil evidence

Is there genomic evidence

A

130–100 ka, MIS 5

climatic amelioration allowed expansion across Africa as seen by the following fossils in:
Sudan (133kya)
South Africa (115kya)

and into the Levant:
Skhul and Qafzeh (~100kya)

even reached China:
modern human teeth dated to ~80 ka in China

Genomic evidence - Altai Neanderthal

142
Q

Which extant HG societies can trace their lineage back to the pan-African expansion in MIS5

A

Khoe San

143
Q

Give examples of increased cultural complexity during expansions stage of human diversification

Give an example of regionalized culture in the MSA (300-30kya)

A

Qafzeh was intentionally buried (ochre at scene - ritualistic or pragmatic?)

SB flake-based technology includes finely shaped, bifacially worked, lanceolate points that were prob-ably parts of spearheads (2), whereas the blade-rich HP is associated with backed (blunted) tools

see also geometric markings on stone from >70kya

144
Q

What genomic evidence suggests humans made it to Eurasia ~30kya before the true dispersal

What does this evidence imply about this dispersal

A

Altai Neanderthal - genomic signs of admixture with a modern human population that dispersed into Eurasia before the ancestors of living non-African peoples sampled to date

the Altai Neanderthal is the only case so far in which the children from a human-Neanderthal sexual encounter were brought up as Neanderthals, suggesting that, by that stage, the populations of early MIS5 Eurasian modern humans were small and outcompeted

145
Q

What had happened to sapiens’ populations by the second half of MIS-5
(Dispersals, 70–50 ka, MIS 4–3)

A

(i) African populations were structured into different groups
(ii) that one of these groups (‘X’) underwent sequential waves of expansion that led first to the establishment of descendant populations within Africa, creating the north–south cline of matrilineal relatedness in this group;
(iii) that one of the descendant groups expanded out-of-Africa (‘X-ooA’), came into contact with Neanderthals, and assimilated some Neanderthal individuals into the group;
(iv) that this population with Neanderthal admixture

REMEMBER INCREASED CULTURAL COMPLEXITY FROM 70kya

146
Q

When was the structuring phase of human diversification

What happened here generally

A

Structuring of existing variation, 45–25 ka, MIS 3–2

shaping of non-African diversity when local patterns of extinction/survivorship magnified the differences acquired during the process of population dispersals of the preceding phase and created the basal inter-population structure among non-Africans, magnifying the differences acquired during the process of population splitting in the dispersal phase

this structuring was intensified by admixtures with other hominins eg Neanderthal and Denisovans, which selection on the introgressed genes

147
Q

When was the LGM

What happened globally

A

26.5–19 ka

Northern latitudes were partly covered by glaciers or developed polar desert conditions and became depopulated; the tropical desert and semi-desert belts became hyper arid, further reducing land availability and shifting animal distributions; in between extremes of cold and aridity, populations contracted into refugia

led to changes in genes and tech (eg first recorded manufacture of pottery in China)

148
Q

What was the last phase of human diversification

What was the first thing to happen in this period

A

The Holocene Filter, 15–0 ka, MIS 2–1

onset of African humid period 15kya and the expansion of some hunter–gatherer–fishers from localized refugia across vast spaces newly created by abrupt climate change and forest expansion

149
Q

Describe how different populations in Africa changed 15kya during beginning of Holocene filter

In Eurasia?

A

an extensive hunting–fishing population and/or trading network spread from the northern Kenyan lakes to the Nile, across the Sahel and into the greening Sahara

Eurasia: HGs expanded north, which had previously been covered in permafrost, eventually leading to the peopling of the Americas

150
Q

Which area was unique during the early Holocene filter (15kya)

A

Southeast Asia is a unique case, since the Late Pleistocene/Early Holocene is not period of niche expansion but reduction associated with the flooding of the Sunda landmass and Sahul

(although archaeological, fossil, linguistic and genetic evidence suggests that Aboriginal Australian and Papuan populations already had differentiated trajectories)

151
Q

What allowed the rapid expansion of farmers

What slowed down the expansion?

A

removed unpredictability of HG lifestyle and increased fertility (even at cost of health)

farmers’ need for protein - obtained by trading with hunter–gatherers at the edge of forests, mountains and lakes
this may have led to decreased linguistic diversity (eg Mbuti who now only speak Bantu like the neighbours they trade with; although Hadza have maintained their languages)

152
Q

What do the transitions in sapiens evolution result from

A

interaction between (i) the addition of variation during population collapse and rapid expansion and (ii) the loss of variation due to localized population extinction and/or their partial assimilation into expanding groups.

153
Q

What is an adaptive radiation

A

a process in which organisms diversify rapidly from an ancestral species into a multitude of new forms, particularly when a change in the environment makes new resources available, alters biotic interactions or opens new environmental niches.

Starting with a single ancestor, this process results in the speciation and phenotypic adaptation of an array of species exhibiting different morphological and physiological traits.