Lesson 9: Introduction to Metabolism Flashcards

1
Q

some types of metabilism

A
  • glycolysis, TCA, fermentation
  • transcription, translation, purine recycling
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2
Q

linear pathways

A

A <> B <> C <> D

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3
Q

branched pathways

A

A <> B <> C <> D –> E and –> F

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4
Q

catabolism

A
  • breakdown pathways. high energy molecules –> low energy molecules (ex: glucose -> CO2)
  • oxidative, produce energy, strip H+ and e- away from reduced “fuels”
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5
Q

anabolism

A
  • biosoyntheic pathways. Low energy molecules –> high energy molecules
  • reductive, consume energy, utilize H+ and e- from catabolism
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6
Q

more on catabolism

A
  • produces energy
  • generates monomers
  • produces reduced coenzymes
  • (e-)

OVERALL: net oxidative

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7
Q

more on anabolism

A
  • uses energy
  • uses monomers
  • uses reduced coenzymes
  • (e-)

OVERALL: net reductive

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8
Q

are many biomolecules and primary metabolites shared

A

YES

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9
Q

near equilibrium rxn

A

easily reversible under cellular conditions

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10
Q

far from equilibrium rxn

A

essentially irreversible under cellular conditions
— big delta G

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11
Q

what could be the advantage of having both near and far from equilibrium rxns in the cell

A

sharing enzymes –> minimizing # of enzymes that the cell needs to have

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12
Q

if delta H is negative (favorable) and delta S is positive (favorable) then

A

delta G will be negative/exergonic and will be spontaneous because its negative at all temperatures

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13
Q

if delta H is positive (unfavorable) and delta S is negative (unfavorable) then

A

delta G will be positive/endergonic and will not be spontaneous because delta G is positive for temperatures

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14
Q

if delta H is negative (favorable) and delta S is negative (unfavorable) then

A

delta G will be negative when T is low (T< DeltaH/DeltaS) and positive when T is high (T > deltaH/DeltaS)
– spontaneous when delta G is negative

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15
Q

if delta H is positive (unfavorable) and delta S is positive (favorable) then

A

delta G will be negative when T is high and positive when T is low
- spontaneous only when delta G is negative (when T > delta H/delta S

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16
Q

K’eq far

A

10^2 and up
10^-2, 10^-3 (keep getting neg) and so on…..

17
Q

K’eq near

A

between 10^1 and 10^-1

18
Q

kJ/mol near

A

around -6 to 6 Kj

19
Q

unfavorable rxns (endergonic) occur in cells by

A

coupling them to favorable reactions

20
Q

source of Gibbs free energy in terms of molecular structure

A
  • repulsive forces between negatively charged phosphate groups (more stable: negative charges allowed to get further away)
  • resonance stabilixation of phosphate = having good leaving group resulting in low E of products compared to reactants
21
Q

high energy compounds

A

adenosine triphosphate (ATP; thioesters, acyl-phosphates, GTP

22
Q

hydrolysis

A
  • relieves electrostatic repulsion between negative charges between B and Y phosphoryl group
  • the hydrolysis products are better resonance stabilized and therefore lower in energy
23
Q

free energy of hydrolysis for thioesters and oxygen esters:

A

another ay to visualize the concept of “high energy” compounds
– add H2O across bond — increases stability

24
Q

electron carrying compounds

A

NAD+ and FAD
— electrons have to go somewhere when they are being stripped away => they go to these reducing agents

25
Q

NAD+ reducing

A

NAD+ (ox) + 2 e- + 2 H+ –> NADH )red_ + H+

26
Q

FAD reducing

A

FAD (ox) + 2e- + 2H+ –>? FADH2 (red)