enzyme kinetics and inhibition Flashcards

1
Q

kinetics

A

study of the rate at which some process progresses

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2
Q

equilibrium assumption

A

assuming P is produced more slowly that ES is dissociated, so that k2«k1, the rate of ES formation reaches equilibrium relatively rapidly

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3
Q

steady-state assumption

A

assuming the probability the P->S is very low, k2 can be ignored. therefore, the reaction reaches a steady state in which the rate of ES formation equals the state of ES loss, either to reverse reaction or product formation

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4
Q

what is the equation for enzyme kinetics?

A

E+S <->ES<-> E+P

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5
Q

at low [S], most of the enzyme is in the unbound form, E; what does the initial reaction velocity do?

A

increases linearly with [S], since the formation of [ES] depends on [S]

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6
Q

at high [S], most of the enzyme is in the ES complex; the initial velocity no longer increases linearly with substrate concentrations and …

A

approaches a maximum Vmax, since [ES] no longer depends on [S]

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7
Q

total enzyme concentration

A

[Et]=[E]+[ES]

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8
Q

michaelis constant

A

Km= (k-1+k2)/k1

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9
Q

what is kcat?

A

limiting rate constant for a general catalysis reaction so for this simple reaction, kcat=k2

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10
Q

what does Vmax equal?

A

Vmax=kcat[Et]

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11
Q

what is the michaelis-menten equation?

A

Vo=Vmax[S]/km+[S]

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12
Q

Km

A

substrate concentration that gives a rate, Vo, equal to Vmax/2

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13
Q

what is Kd?

A

k-1/k1

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13
Q

what is Vmax?

A

maximal or saturating rate that an enzyme-catalyzed reaction approaches at high substrate concentrations

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14
Q

when [S]»Km, Vo=

A

Vmax[S]/[S]=Vmax

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15
Q

kcat is the turnover number meaning?

A

maximum number of substrate molecules an enzyme molecule can convert to product per unit time

16
Q

kcat equal what?

A

Vmax/[Et]

17
Q

kcat/Km

A

can be used as a specificity constant because it is a measure of the enzyme’s catalytic efficiency

18
Q

the larger the kcat/km, the better the what?

A

the catalytic efficiency

19
Q

kcat/km has an upper bound of …

A

10^8 to 10^9 1/M*s, because ES formation is limited by rate at which E and S can diffuse together

20
Q

the rate of chymotrypsin-catalyzed peptide bond cleavage exhibits a…

A

bell-shaped pH dependent profile

21
Q

enzyme activity can be inhibited by small molecules and other proteins, which bind to the enzyme, but do not produce a product, which is what?

A

noncovalent (or reversible) inhibition, covalent (or irreversible) inhibition

22
Q

competitive inhibition (reversible) equation

A

Vo= Vmax[S]/(1+[l]/Ki)Km+[S]

23
Q

uncompetitive inhibition (reversible)

A

a’/Vmax