16: Gene Expression Flashcards
Regulation of Gene Expression, Prokaryotic Gene Regulation, Eukaryotic Epigenetic Gene Regulation, Eukaryotic Transcription Gene Regulation, Eukaryotic Post-transcriptional Gene Regulation, Eukaryotic Translational and Post-translational Gene Regulation, Cancer and Gene Regulation (86 cards)
What does it mean to be epigenetic?
Heritable changes that do not involve changes in the DNA sequence.
What is gene expression?
Processes that control the turning on or turning off of a gene.
What is post-transcriptional gene expression?
Control of gene expression after the RNA molecule has been created by before it is translated into a protein.
What is post-translational gene expression?
Control of gene expression after a protein has been created.
Where is gene expression regulated in prokaryotes?
In prokaryotes, to synthesize a protein, the processes of transcription and translation occur almost simultaneously. When the resulting protein is no longer needed, transcription stops. As a result, the primary method to control what type of protein and how much of each protein is expressed in a prokaryotic cell is the regulation of DNA transcription. All of the subsequent steps occur automatically. When more protein is required, more transcription occurs. Therefore, in prokaryotic cells, the control of gene expression is mostly at the transcriptional level.
Where is gene expression regulated in eukaryotes?
Regulation may occur when the DNA is uncoiled and loosened from nucleosomes to bind transcription factors (epigenetic level), when the RNA is transcribed (transcriptional level), when the RNA is processed and exported to the cytoplasm after it is transcribed (post-transcriptional level), when the RNA is translated into protein (translational level), or after the protein has been made (post-translational level).
How did gene regulation evolve?
Some cellular processes arose from the need of the organism to defend itself. Cellular processes such as gene silencing developed to protect the cell from viral or parasitic infections. If the cell could quickly shut off gene expression for a short period of time, it would be able to survive an infection when other organisms could not. Therefore, the organism evolved a new process that helped it survive, and it was able to pass this new development to offspring.
What is an activator?
A protein that binds to prokaryotic operators to increase transcription.
What is a catabolite activator protein (CAP)?
A protein that complexes with cAMP to bind to the promoter sequences of operons that control sugar processing when glucose is not available.
What is an inducer?
A small molecule that either activates or represses transcription depending on the needs of the cell and the availability of substrate.
What is an inducible operon?
An operon that can be activated or repressed depending on cellular needs and the surrounding environment.
What is a lac operon?
An operon in prokaryotic cells that encodes genes required for processing and intake of lactose.
What is a negative regulator?
A protein that prevents transcription.
What is an operator?
A region of DNA outside of the promoter region that binds activators or repressors that control gene expression in prokaryotic cells.
What is an operon?
Collection of genes involved in a pathway that are transcribed together as a single mRNA in prokaryotic cells.
What is a positive regulator?
A protein that increases transcription.
What is a repressor?
A protein that binds to the operator of prokaryotic genes to prevent transcription.
What is the transcriptional start site?
The site at which transcription begins.
What is a trp operon?
A series of genes necessary to synthesize tryptophan in prokaryotic cells.
What is tryptophan?
An amino acid that can be synthesized by prokaryotic cells when necessary.
What are the types of regulatory molecules in prokaryotic cells?
There are three types of regulatory molecules that can affect the expression of operons: repressors, activators, and inducers.
What are some examples of repressors, activators, and inducers?
The trp operon is a repressor, catabolite activator protein (CAP) is an activator, and the lac operon is an inducer.
What happens to the trp operator in the presence of tryptophan?
A DNA sequence called the operator sequence is encoded between the promoter region and the first trp coding gene. This operator contains the DNA code to which the repressor protein can bind. When tryptophan is present in the cell, two tryptophan molecules bind to the trp repressor, which changes shape to bind to the trp operator. Binding of the tryptophan–repressor complex at the operator physically prevents the RNA polymerase from binding, and transcribing the downstream genes.
Is the trp operon positively or negatively regulated?
When tryptophan is not present in the cell, the repressor by itself does not bind to the operator; therefore, the operon is active and tryptophan is synthesized. Because the repressor protein actively binds to the operator to keep the genes turned off, the trp operon is negatively regulated and the proteins that bind to the operator to silence trp expression are negative regulators.