2-3-25 Flashcards

PGx Testing and technologies lecture 6 (41 cards)

1
Q

what are examples of FDA-approved PGx drug labels?

A

one gene-multiple drugs
one drug-multiple genes
one gene-multiple alleles

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2
Q

who performs PGx test?

A

CLIA (clinical laboratory improvement amendments of 1988) certified labs

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3
Q

what is the CLIA?

A

US federal regulatory standards that apply to all clinical laboratory testing performed on humans in the US, except clinical trials and basic research

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4
Q

how does a CLIA lab perform a PGx test?

A

through FDA-approved platform/technology

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5
Q

how can a person find a CLIA lab?

A

through the GTR (genetic testing registry)

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6
Q

how can enough information be collected for a PGx test?

A

work closely with the therapeutic team
discuss with the patient
understand the FDA labeling/CPIC guidelines
know the principle of technologies

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7
Q

how can an informed decision be made with a PGx test?

A

strength of the PGx information vs other factors
cost vs benefits
selection of technologies

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8
Q

what answers the question “how convincing”?

A

nature of PGx studies for discovering the marker
ex - sample size, design, replication

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9
Q

what answers the question of how effective?

A

evidence in applying the PGx in clinical practice
ex - genotype the patients first and test the outcome

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10
Q

what answers the question how important?

A

the overall impact of the genotype on the phenotype
ex. 20-90% in all drugs

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11
Q

what are 4 levels of PGx?

A

genetic testing required
genetic testing recommended
actionable PGx
informative PGx

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12
Q

what does actionable PGx mean?

A

drug label mentioned-you determine

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13
Q

what does informative PGx mean?

A

suggestive

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14
Q

how can you determine the clinical implications of PGx test?

A

by determining the strength between a PGx marker and a clinical consequence through the questions how convincing, effective, and important is it

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15
Q

why should PGx not be relied on alone?

A

other non-genetic factors are in play (age, gender, BMI, diet, supplement intake)
especially when there is a sign of dangerous adverse drug reactions

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16
Q

is PGx testing required for all related drugs?

A

NO

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17
Q

why do not all drugs need testing?

A

do not bring enough benefit with a value that is hard to determine
- many test are not covered by insurance
- severe toxicity for many drugs is rare
- few patients may benefit from the test
- should consider when PGx information is already available

18
Q

what is an example of a drug that PGx testing should occur with?

A

warfarin
information already available

19
Q

how should it be determined if a PGx should be taken?

A

know the strengths and limitations of different methods
balance the cost and the information you need

20
Q

what allele may be more important for African descendants?

21
Q

what are other important factors to be considered for genetic testing?

A

family history
race and ethnicity
vulnerable populations
consent/assent

22
Q

why is family history an important factor to consider?

A

often indicates an involvement of genetic factors
example - patient has previous ADR or genetically related relatives

23
Q

why is race and ethnicity important factor to be considered?

A

allele frequency/mutation rate can be very different between populations
example - CYP2C9

24
Q

what are examples of vulnerable populations that need to be considered?

A

children
patients with diminished competence and/or decision-making capacity due to medical conditions
incomplete medical information

25
why are children considered vulnerable populations?
drug metabolism can be different from adults
26
what are examples of diminished competence due to medical conditions?
schizophrenia bipolar disorder some dementias
27
what are the samples for PGx testing?
DNA is the target (any nucleated cells/tissue contains germline DNA)
28
what are the principles of samples for PGx testing?
easy to collect avoid contamination less invasive availability of standard procedure (ex commercial kits)
29
how should white blood cells (DNA) be collected?
2-6mL in a EDTA-anticoagulant tube (purple top) use sterile technique and keep room temperature for same day/overnight delivery
30
what are the advantages of peripheral blood?
good and stable yield of DNA less contamination with other DNA sources standard handling procedures most commonly used medical sample
31
what are limitations of peripheral blood?
invasive requires more professional collection and handling need to pay attention to special patients
32
how does DNA with special patients differ in peripheral blood?
chemotherapy/radiotherapy --> fewer cells, DNA sequence may be altered bone marrow transplantation --> different DNA
33
what is the breakdown of peripheral blood?
plasma lymphocyte and monocyte band density gradient fluid gel barrier erythrocytes and neutrophils
34
what are the benefits of a cheek swab/brush?
easy and noninvasive to collect from buccal epithelial cells room temperature handling
35
what are the limitations of cheek swab/brush?
less DNA yield than blood (1-5mcg, but still enough for assays) possible contamination of food, bacteria, etc some studies showed a lower DNA quality
36
what are the examples of tumor tissue testing?
fresh biopsy formalin fixed and paraffin embedded (FFPE)
36
what is shown in a fresh biopsy testing?
high yield of DNA snap frozen in liquid N2 (need dry ice for transpo and -80C for long term storage ALWAYS)
36
what is FFPE?
formalin fixed and paraffin embedded DNA is usually degraded many detections are still doable
37
what is benefits of DNA handling?
DNA is very stable especially pure and dried (RNA is less stable though)
38
what are the factors that affect DNA handling?
pH (neutral), avoid antioxidants, UV repeated freezing and thawing bacteria contamination aliquot into small volume if possible storage technique
39
how does DNA handling need to be stored?
short --> 4C (1-2 months) long --> -80C (years)