2. Cells Flashcards

(110 cards)

1
Q

What are the distinguishing features of eukaryotic cells?

A

● Cytoplasm containing membrane-bound organelles
● So DNA enclosed in a nucleus

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2
Q

Describe the general structure of eukaryotic cells

A

Both:
- Cell-surface membrane
- Mitochondrion
- Nucleus
- Ribosomes
- Rough endoplasmic reticulum
- Smooth endoplasmic reticulum
- Gogli apparatus
- Lysosome

Plant:
- Chlororplast
- Cell wall
- Cell vacuole

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3
Q

Describe the structure of the cell-surface membrane

A

Hydrophilic phospate heads
- Point to / are attracted to water.

Hydrophobic fatty acid tails
- Point away / repelled from water.

Cotains the phospholipid bilayer and proteins.

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4
Q

Describe the function of the cell-surface membrane

A

● Selectively permeable → enables control of passage of substances in / out of cell
● Molecules / receptors / antigens on surface → allow cell recognition / signalling

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5
Q

Describe the structure of the nucleus

A

Nuclear envelope
- Double membrane
- Has nuclear pores

Nuceloplasm

Nucleolus (dense region)

Protein/histone-bound, liniear DNA
- Chromatin = condensed
- Chromosome = highly condensed

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6
Q

Describe the function of the nucleus

A

● Holds / stores genetic information which codes for polypeptides (proteins)
● Site of DNA replication
● Site of transcription (part of protein synthesis), producing mRNA
● Nucleolus makes ribosomes / rRNA

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7
Q

Describe the structure of a ribosome

A

● Made of ribosomal RNA and protein (two subunits)
● Not a membrane-bound organelle

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8
Q

Describe the function of a ribosome

A

Site of protein synthesis (translation)

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9
Q

Describe the structure of rough (rER) & smooth endoplasmic reticulum (sER)

A

system of membranes

rER - ribosomes

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10
Q

Describe the function of rER and sER

A

rER:
● Ribosomes on surface synthesise proteins
● Proteins processed / folded / transported inside rER
● Proteins packaged into vesicles for transport eg. to Golgi apparatus

sER:
● Synthesises and processes lipids
● Eg. cholesterol and steroid hormones

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11
Q

Describe the structure of Golgi apparatus and Golgi vesicles

A

Golgi apparatus
- Flattened membarne sacs

Golgi vesicle
- Small membrane sac

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12
Q

Describe the function of Golgi apparatus and Golgi vesicles

A

Golgi
apparatus:
● Modifies protein, eg. adds carbohydrates to produce glycoproteins
● Modifies lipids, eg. adds carbohydrates to make glycolipids
● Packages proteins / lipids into Golgi vesicles
● Produces lysosomes (a type of Golgi vesicle)

Golgi
vesicles:
● Transports proteins / lipids to their required destination
● Eg. moves to and fuses with cell-surface membrane

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13
Q

Describe the structure of lysosomes

A
  • Membrane
  • Hydrolytic enzymes
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14
Q

Describe the function of lysosomes

A

● Release hydrolytic enzymes (lysozymes)
● To break down / hydrolyse pathogens or worn-out cell components

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15
Q

Describe the structure of mitochondria

A
  • Outer membrane
  • Cristae - inner membrane fold
  • Matrix - small ribosomes, circular DNA
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16
Q

Describe the function of mitochondria

A

● Site of aerobic respiration
● To produce ATP for energy release
● Eg. for protein synthesis / vesicle movement / active transport

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17
Q

Describe the structure of chloroplasts in plants and algae

A
  • Double membrane
  • Stroma: Thylakoid membrane, 70s ribosomes, circular DNA, strach granules
  • Lamella - thylakoid linking grana
  • Grana - stacks of theylakoid
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18
Q

Describe the function of chloroplasts in plants and algae

A

● Absorbs light energy for photosynthesis
● To produce organic substances eg. carbohydrates / lipids

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19
Q

Describe the structure of the cell wall in plants, algae and fungi

A

● Composed mainly of cellulose (a polysaccharide) in plants / algae
● Composed of chitin (a nitrogen-containing polysaccharide) in fungi

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20
Q

Describe the function of the cell wall in plants, algae and fungi

A

● Provides mechanical strength to cell
● So prevents cell changing shape or bursting under pressure due to osmosis

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21
Q

Describe the structure of the cell vacuole in plants

A
  • Tonoplast membrane
  • Cell sap
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22
Q

Describe the function of the cell vacuole in plants

A

● Maintains turgor pressure in cell (stopping plant wilting)
● Contains cell sap → stores sugars, amino acids, pigments and any waste chemicals

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23
Q

Describe how eukaryotic cells are organised in complex multicellular
organisms

A

Tissue: Group of specialised cells with a similar structure working together
to perform a specific function, often with the same origin

Organ: Aggregations of tissues performing specific functions

Organ system: Group of organs working together to perform specific functions

In complex multicellular organisms, eukaryotic cells become specialised for specific functions

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24
Q

What are the distinguishing features of prokaryotic cells?

A

● Cytoplasm lacking membrane-bound organelles
● So genetic material not enclosed in a nucleus

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25
Describe the general structure of prokaryotic cells
Always present: - Cell surface membrane - Cell wall: contains murien, a glycoprotien - Cytoplasm - Small ribosomes - Circular DNA: free in cytoplasm, not associated with proteins) Sometimes present: - Capsule (on the outside) - Plasmitd: small rings of DNA - Flagella
26
Compare and contrast the structure of eukaryotic and prokaryotic cells
Eukaryotic cell: - Has membrane-bound organelles eg. mitochondria, endoplasmic reticulum - Has a nucleus Containing DNA - DNA is long & linear & associated with histone proteins - Larger (80S) ribosomes (in cytoplasm) - Cell wall only in plants, algae and fungi Containing cellulose or chitin - Plasmids / capsule never present (sometimes flagella) - Larger overall size Prokarytoic cell: - No membrane-bound organelles eg. no mitochondria, endoplasmic reticulum - No nucleus DNA is is free in cytoplasm - DNA is short & circular & not associated with proteins - Smaller (70S) ribosomes - Cell wall in all prokaryotic cells Containing murein, a glycoprotein - Plasmids, flagella and a capsule sometimes present - Much smaller overall size
27
Explain why viruses are described as acellular and non-living
● Acellular - not made of cells, no cell membrane / cytoplasm / organelles ● Non-living - have no metabolism, cannot independently move / respire / replicate / excrete
28
Describe the general structure of a virus particle
1. Nucleic acids surrounded by a capsid (protein coat) 2. Attachment proteins allow attachment to specific host cells 3. No cytoplasm, ribosomes, cell wall, cell-surface membrane etc. 4. Some also surrounded by a lipid envelope eg. HIV
29
Describe the difference between magnification and resolution
● Magnification = number of times greater image is than size of the real (actual) object ○ Magnification = size of image / size of real object ● Resolution = minimum distance apart 2 objects can be to be distinguished as separate objects
30
Compare the principles and limitations of optical microscopes, transmission electron microscopes and scanning electron microscopes
Optical microscope: - Light focused using glass lenses - Light passes through specimen, different structures absorb different amounts & wavelengths - Generates a 2D image of a cross-section - Low resolution due to long wavelength of light - Can’t see internal structure of organelles or ribosomes - Specimen = thin - Low magnification (x 1500) - Can view living organisms - Simple preparation - Can show colour Transmission electron microscope (TEM): - Electrons focused using electromagnets - Electrons pass through specimen, denser parts absorb more and appear darker - Generates a 2D image of a cross-section - Very high resolution due to short wavelength of electrons - Can see internal structures of organelles and ribosomes - Specimen = very thin - High magnification (x 1,000,000) - Can only view dead / dehydrated specimens as uses a vacuum - Complex preparation so artefacts often present - Does not show colour Scanning electron microscope (SEM): - Electrons focused using electromagnets - Electrons deflected / bounce off specimen surface - Generates a 3D image of surface - High resolution due to short wavelength of electrons - Can’t see internal structures - Specimen does not need to be thin - High magnification (x 1,000,000) - Can only view dead / dehydrated specimens as uses a vacuum - Complex preparation so artefacts often present - Does not show colour
31
Suggest how the scientific community distinguished between artefacts (eg. dust, air bubbles occurring during preparation) and cell organelles
● Scientists prepared specimens in different ways ● If an object was seen with one technique but not another, it was more likely to be an artefact than an organelle
32
List the steps in calculations involving magnification, real size & image size
1 Note formula / rearrange if necessary (I = AM) 2 Convert units if necessary - image and actual size must be in same unit 3 Calculate answer and check units required or if standard form etc. is required
33
Describe how the size of an object viewed with an optical microscope can be measured
1. Line up (scale of) eyepiece graticule with (scale of) stage micrometre 2. Calibrate eyepiece graticule - use stage micrometre to calculate size of divisions on eyepiece graticule 3. Take micrometre away and use graticule to measure how many divisions make up the object 4. Calculate size of object by multiplying number of divisions by size of division 5. Recalibrate eyepiece graticule at different magnifications
34
Describe and explain the principles of cell fractionation and ultracentrifugation as used to separate cell components
1. Homogenise tissue / use a blender ● Disrupts the cell membrane, breaking open cells to release contents / organelles 2. Place in a cold, isotonic, buffered solution ● Cold to reduce enzyme activity ○ So organelles not broken down / damaged ● Isotonic so water doesn’t move in or out of organelles by osmosis ○ So they don’t burst ● Buffered to keep pH constant ○ So enzymes don’t denature 3. Filter homogenate ● Remove large, unwanted debris eg. whole cells, connective tissue 4. Ultracentrifugation - separates organelles in order of density / mass ● Centrifuge homogenate in a tube at a low speed ● Remove pellet of heaviest organelle and respin supernatant at a higher speed ● Repeat at increasing speeds until separated out, each time the pellet is made of lighter organelles (nuclei → chloroplasts / mitochondria → lysosomes → ER → ribosomes)
35
Summarise the stages of the cell cycle in eukaryotic cells
Stage 1 Interphase ● DNA replicates semi-conservatively (S phase) ○ Leading to 2 chromatids (identical copies) joined at a centromere ● Number of organelles & volume of cytoplasm increases, protein synthesis (G1 / G2) Stage 2 Mitosis ● Nucleus divides ● To produce 2 nuclei with identical copies of DNA produced by parent cell Stage 3 Cytokinesis ● Cytoplasm and cell membrane (normally) divide ● To form 2 new genetically identical daughter cells
36
Describe the behaviour of chromosomes & role of spindle fibres in mitosis
Stage 1 Prophase ● Chromosomes condense, becoming shorter / thicker so visible ○ Appear as 2 sister chromatids joined by a centromere ● Nuclear envelope breaks down ● Centrioles move to opposite poles forming spindle network ● Spindle fibres start to attach to chromosomes by their centromeres Stage 2 Metaphase ● Spindle fibres attach to chromosomes by their centromeres ● Chromosomes align along equator Stage 3 Anaphase ● Spindle fibres shorten / contract ● Centromere divides ● Pulling chromatids (from each pair) to opposite poles of cell Stage 4 Telophase ● Chromosomes uncoil, becoming longer / thinner ● Nuclear envelopes reform = 2 nuclei ● Spindle fibres / centrioles break down
37
Why do some eukaryotic cells not undergo the cell cycle?
● Within multicellular organisms, not all cells retain the ability to divide (eg. neurons) ● Only cells that do retain this ability go through a cell cycle
38
Explain the importance of mitosis in the life of an organism
Parent cell divides to produce 2 genetically identical daughter cells for: ● Growth of multicellular organisms by increasing cell number ● Replacing cells to repair damaged tissues ● Asexual reproduction
39
Describe how tumours and cancers form
Mitosis is a controlled process so: ● Mutations in DNA / genes controlling mitosis can lead to uncontrolled cell division ● Tumour formed if this results in mass of abnormal cells ○ Malignant tumour = cancerous, can spread (metastasis) ○ Benign tumour = non-cancerous
40
Suggest how cancer treatments control rate of cell division
● Some disrupt spindle fibre activity / formation ○ So chromosomes can’t attach to spindle by their centromere ○ So chromatids can’t be separated to opposite poles (no anaphase) ○ So prevents / slows mitosis ● Some prevent DNA replication during interphase ○ So can’t make 2 copies of each chromosome (chromatids) ○ So prevents / slows mitosis ## Footnote (These are more effective against cancer cells due to uncontrolled cell division, but also disrupts cell cycle of rapidly dividing healthy cells)
41
Describe how prokaryotic cells replicate
Binary fission: 1. Replication of circular DNA 2. Replication of plasmids 3. Division of cytoplasm to produce 2 daughter cells ○ Single copy of circular DNA ○ Variable number of copies of plasmids
42
Describe how viruses replicate
1. Attachment proteins attach to complementary receptors on host cell 2. Inject viral nucleic acid (DNA/RNA) into host cell 3. Infected host cell replicates virus particles: a. Nucleic acid replicated b. Cell produces viral protein / capsid / enzymes c. Virus assembled then released ## Footnote Being non-living, viruses do not undergo cell division
43
Required practical 2
Preparation of stained squashes of cells from plant root tips; set-up and use of an optical microscope to identify the stages of mitosis in these stained squashes and calculation of a mitotic index. Students should measure the apparent size of cells in the root tip and calculate their actual size using the formula: actual size = size of image / magnification
44
Describe how to prepare squashes of cells from plant root tips
1. Cut a thin slice of root tip (5mm from end) using scalpel and mount onto a slide 2. Soak root tip in hydrochloric acid then rinse 3. Stain for DNA (eg. with toluidine blue) 4. Lower coverslip using a mounted needle at 45 o without trapping air bubbles 5. Squash by firmly pressing down on glass slip but do not push sideways
45
Explain why root tips are used. (1) ## Footnote RP2
● Where dividing cells are found / mitosis occurs
46
Explain why a stain is used. (1) ## Footnote RP2
● To distinguish chromosomes ● Chromosomes not visible without stain
47
Explain why the cover slip needs to be squashed / pressed down. (1) ## Footnote RP2
● (Spreads out cells) to create a single layer of cells ● So light passes through to make chromosomes visible
48
Explain why the cover slip should not be pushed sideways. (1) ## Footnote RP2
● Avoid rolling cells together / breaking chromosomes
49
Give two reasons why the roots should be soaked in acid. (2) ## Footnote RP2
● Separate cells / cell walls ● To allow stain to diffuse into cells ● To allow cells to be more easily squashed ● To stop mitosis
50
Describe how to set-up and use an optical microscope
1 Clip slide onto stage and turn on light 2 Select lowest power objective lens (usually x 4) 3 a. Use coarse focusing dial to move stage close to lens b. Turn coarse focusing dial to move stage away from lens until image comes into focus 4 Adjust fine focusing dial to get clear image 5 Swap to higher power objective lens, then refocus
51
Explain how the stages of mitosis can be identified
Stage, Appearance, Explanation Prophase ● Chromosomes visible / distinct → because condensing ● But randomly arranged → because no spindle activity / not attached to spindle fibre Metaphase ● Chromosomes lined up on equator → because attaching to spindle Anaphase ● Chromatids (in two groups) at poles of spindle ● Chromatids V shaped → because being pulled apart at their centromeres by spindle fibres Telophase ● Chromosomes in two sets, one at each pole ## Footnote In interphase (not mitosis), chromosomes aren’t visible but nuclei are. In mitosis, chromosomes are visible.
52
What is a mitotic index (MI)?
● Proportion of cells undergoing mitosis (with visible chromosomes) ● Mitotic index = number of cells undergoing mitosis / total number of cells in sample
53
Explain how to determine a reliable MI from observed squashes
● Count cells in mitosis in field of view ● Count only whole cells / only cells on top and right edges → standardise counting ● Divide this by total number of cells in field of view ● Repeat with many / at least 5 fields of view selected randomly → representative sample ● Calculate a reliable mean
54
Suggest how to calculate the time cells are in a certain phase of mitosis
1. Identify proportion of cells in named phase at any one time ○ Number of cells in that phase / total number of cells observed 2. Multiply by length of cell cycle
55
Describe the fluid-mosaic model of membrane structure
● Molecules free to move laterally in phospholipid bilayer ● Many components - phospholipids, proteins, glycoproteins and glycolipids ## Footnote ● Many components - phospholipids, proteins, glycoproteins and glycolipids The basic structure of all cell membranes (cell-surface membranes & membranes around eukaryotic organelles) is the same
56
Describe the arrangement of the components of a cell membrane
● Phospholipids form a bilayer - fatty acid tails face inwards, phosphate heads face outwards ● Proteins ○ Intrinsic / integral proteins span bilayer eg. channel and carrier proteins ○ Extrinsic / peripheral proteins on surface of membrane ● Glycolipids (lipids with polysaccharide chains attached) found on exterior surface ● Glycoproteins (proteins with polysaccharide chains attached) found on exterior surface ● Cholesterol (sometimes present) bonds to phospholipid hydrophobic fatty acid tails
57
Explain the arrangement of phospholipids in a cell membrane
● Bilayer, with water present on either side ● Hydrophobic fatty acid tails repelled from water so point away from water / to interior ● Hydrophilic phosphate heads attracted to water so point to water
58
Explain the role of cholesterol (sometimes present) in cell membranes
● Restricts movement of other molecules making up membrane ● So decreases fluidity (and permeability) / increases rigidity
59
Suggest how cell membranes are adapted for other functions
● Phospholipid bilayer is fluid → membrane can bend for vesicle formation / phagocytosis ● Glycoproteins / glycolipids act as receptors / antigens → involved in cell signalling / recognition
60
Describe how movement across membranes occurs by simple diffusion
● Lipid-soluble (non-polar) or very small substances eg. O2 , steroid hormones ● Move from an area of higher concentration to an area of lower conc., down a conc. gradient ● Across phospholipid bilayer ● Passive - doesn’t require energy from ATP / respiration (only kinetic energy of substances)
61
Explain the limitations imposed by the nature of the phospholipid bilayer
● Restricts movement of water soluble (polar) & larger substances eg. Na + / glucose ● Due to hydrophobic fatty acid tails in interior of bilayer
62
Describe how movement across membranes occurs by facilitated diffusion
● Water-soluble / polar / charged (or slightly larger) substances eg. glucose, amino acids ● Move down a concentration gradient ● Through specific channel / carrier proteins ● Passive - doesn’t require energy from ATP / respiration (only kinetic energy of substances)
63
Explain the role of carrier and channel proteins in facilitated diffusion
● Shape / charge of protein determines which substances move ● Channel proteins facilitate diffusion of water-soluble substances ○ Hydrophilic pore filled with water ○ May be gated - can open / close ● Carrier proteins facilitate diffusion of (slightly larger) substances ○ Complementary substance attaches to binding site ○ Protein changes shape to transport substance
64
Describe how movement across membranes occurs by osmosis
● Water diffuses / moves ● From an area of high to low water potential (ψ) / down a water potential gradient ● Through a partially permeable membrane ● Passive - doesn’t require energy from ATP / respiration (only kinetic energy of substances) ## Footnote Water potential is a measure of how likely water molecules are to move out of a solution - pure (distilled) water has the maximum possible ψ (0 kPA), increasing solute concentration decreases ψ
65
Describe how movement across membranes occurs by active transport
● Substances move from area of lower to higher concentration / against a concentration gradient ● Requiring hydrolysis of ATP and specific carrier proteins
66
Describe the role of carrier proteins and the importance of the hydrolysis of ATP in active transport
1. Complementary substance binds to specific carrier protein 2. ATP binds, hydrolysed into ADP + Pi, releasing energy 3. Carrier protein changes shape, releasing substance on side of higher concentration 4. Pi released → protein returns to original shape
67
Describe how movement across membranes occurs by co-transport
● Two different substances bind to and move simultaneously via a co-transporter protein (type of carrier protein) ● Movement of one substance against its concentration gradient is often coupled with the movement of another down its concentration gradient
68
Describe an example that illustrates co-transport
Absorption of sodium ions and glucose (or amino acids) by cells lining the mammalian ileum: 1 ● Na + actively transported from epithelial cells to blood (by Na + /K + pump) ● Establishing a conc. gradient of Na + (higher in lumen than epithelial cell) 2 ● Na + enters epithelial cell down its concentration gradient with glucose against its concentration gradient ● Via a co-transporter protein 3 ● Glucose moves down a conc. gradient into blood via facilitated diffusion ## Footnote The movement of sodium can be considered indirect / secondary active transport, as it is reliant on a concentration gradient established by active transport
69
Describe how surface area, number of channel or carrier proteins and differences in gradients of concentration or water potential affect the rate of movement across cell membranes
● Increasing surface area of membrane increases rate of movement ● Increasing number of channel / carrier proteins increases rate of facilitated diffusion / active transport ● Increasing concentration gradient increases rate of simple diffusion ● Increasing concentration gradient increases rate of facilitated diffusion ○ Until number of channel / carrier proteins becomes a limiting factor as all in use / saturated ● Increasing water potential gradient increases rate of osmosis
70
Explain the adaptations of some specialised cells in relation to the rate of transport across their internal and external membranes
● Cell membrane folded eg. microvilli in ileum → increase in surface area ● More protein channels / carriers → for facilitated diffusion (or active transport - carrier proteins only) ● Large number of mitochondria → make more ATP by aerobic respiration for active transport
71
Required practical 3
Production of a dilution series of a solute to produce a calibration curve with which to identify the water potential of plant tissue.
72
Describe how a dilution can be calculated
You can rearrange and use the formula: C1 x V1 = C2 x V2 with V2 = V1+ volume of distilled water, or: 1. Calculate dilution factor = desired concentration (C2) / stock concentration (C1) 2. Calculate volume of stock solution (V1) = dilution factor x final desired volume (V2) 3. Calculate volume of distilled water = final desired volume (V2) - volume of stock solution (V1)
73
Describe a method to produce of a calibration curve with which to identify the water potential of plant tissue (eg. potato)
Step, Control variables 1. Create a series of dilutions using a 1 mol dm-3 sucrose solution (0.0, 0.2, 0.4, 0.6, 0.8, 1.0 mol dm-3 ) ● Volume of solution, eg. 20 cm3 2. Use scalpel / cork borer to cut potato into identical cylinders ● Size, shape and surface area of plant tissue ● Source of plant tissue ie variety or age 3. Blot dry with a paper towel and measure / record initial mass of each piece ● Blot dry to remove excess water before weighing 4. Immerse one chip in each solution and leave for a set time (20-30 mins) in a water bath at 30 oC ● Length of time in solution ● Temperature ● Regularly stir / shake to ensure all surfaces exposed 5. Blot dry with a paper towel and measure / record final mass of each piece ● Blot dry to remove excess water before weighing Repeat (3 or more times) at each concentration 6. Calculate % change in mass = (final - initial mass)/ initial mass 7. Plot a graph with concentration on x axis and percentage change in mass on y axis (calibration curve) ○ Must show positive and negative regions 8. Identify concentration where line of best fit intercepts x axis (0% change) ○ Water potential of sucrose solution = water potential of potato cells 9. Use a table in a textbook to find the water potential of that solution
74
Explain the changes in plant tissue mass when placed in different concentrations of solute
Increase in mass ● Water moved into cells by osmosis ● As water potential of solution higher than inside cells Decrease in mass ● Water moved out of cells by osmosis ● As water potential of solution lower than inside cells No change ● No net gain/loss of water by osmosis ● As water potential of solution = water potential of cells
75
Required practical 4
Investigation into the effect of a named variable on the permeability of cell-surface membranes.
76
Describe a method to investigate the effect of a named variable (eg. temperature) on the permeability of cell-surface membranes
1. Cut equal sized / identical cubes of plant tissue (eg. beetroot) of same age / type using a scalpel 2. Rinse to remove pigment released during cutting or blot on paper towel 3. Add same number of cubes to 5 different test tubes containing same volume of water (eg. 5 cm3 ) 4. Place each test tube in a water bath at a different temperature (eg. 10, 20, 30, 40, 50 oC) 5. Leave for same length of time (eg. 20 minutes) 6. Remove plant tissue and measure pigment release by measuring intensity of colour or concentration of surrounding solution semi-quantitatively or quantitatively
77
Describe two methods to estimate pigment concentration in a solution
Semi- quantitative ● Use a known concentration of extract and distilled water to prepare a dilution series ● Compare results with these ‘colour standards’ to estimate concentration Quantitative ● Measure absorbance (of light) of known concentrations using a colorimeter ● Draw a calibration curve → plot a graph of absorbance (y) against concentration of extract (x) and draw a line / curve of best fit ● Read off sample absorbance value on curve to find associated concentration
78
What does a high absorbance suggest about the cell-membrane?
● More permeable / damaged ● As more pigment leaks out making surrounding solution more concentrated (darker)
79
Explain how temperature affects permeability of cell-surface membranes
● As temperature increases, cell membrane permeability increases ○ Phospholipids gain kinetic energy so fluidity increases ○ Transport proteins denature at high temperatures as hydrogen bonds break, changing their tertiary structure ● At very low temperatures, cell membrane permeability increases ○ Ice crystals can form which pierce the cell membrane and increase permeability
80
Explain how pH affects permeability of cell-surface membranes
● High or low pH increases cell membrane permeability ○ Transport proteins denature as H / ionic bonds break, changing tertiary structure
81
Explain how lipid-soluble solvents eg. alcohol affect permeability of cell-surface membranes
● As concentration increases, cell membrane permeability increases ● Ethanol (a lipid-soluble solvent) may dissolve phospholipid bilayer (creating gaps)
82
What is an antigen?
● Foreign molecule / protein / glycoprotein / glycolipid ● That stimulates an immune response leading to production of antibody
83
How are cells identified by the immune system?
● Each type of cell has specific molecules on its surface (cell-surface membrane / cell wall) that identify it ● Often proteins → have a specific tertiary structure (or glycoproteins / glycolipids)
84
What types of cells and molecules can the immune system identify?
1. Pathogens (disease causing microorganisms) eg. viruses, fungi, bacteria 2. Cells from other organisms of the same species (eg. organ transplants) 3. Abnormal body cells eg. tumour cells or virus-infected cells 4. Toxins (poisons) released by some bacteria
85
Describe phagocytosis of pathogens (non-specific immune response)
1 Phagocyte attracted by chemicals / recognises (foreign) antigens on pathogen 2 Phagocyte engulfs pathogen by surrounding it with its cell membrane 3 Pathogen contained in vesicle / phagosome in cytoplasm of phagocyte 4 Lysosome fuses with phagosome and releases lysozymes (hydrolytic enzymes) 5 Lysozymes hydrolyse / digest pathogen ## Footnote Phagocytosis leads to presentation of antigens where antigens are displayed on the phagocyte cell-surface membrane, stimulating the specific immune response (cellular and humoral response)
86
87
Describe the response of T lymphocytes to a foreign antigen (the cellular response)
T lymphocytes recognise (antigens on surface of) antigen presenting cells eg. infected cells, phagocytes presenting antigens, transplanted cells, tumour cells etc. Specific helper T cells with complementary receptors (on cell surface) bind to antigen on antigen-presenting cell → activated and divide by mitosis to form clones which stimulate: ● Cytotoxic T cells → kill infected cells / tumour cells (by producing perforin) ● Specific B cells (humoral response - see below) ● Phagocytes → engulf pathogens by phagocytosis
88
Describe the response of B lymphocytes to a foreign antigen (the humoral response)
B lymphocytes can recognise free antigens eg. in blood or tissues, not just antigen presenting cells. 1. Clonal selection: ○ Specific B lymphocyte with complementary receptor (antibody on cell surface) binds to antigen ○ This is then stimulated by helper T cells (which releases cytokines) ○ So divides (rapidly) by mitosis to form clones 2. Some differentiate into B plasma cells → secrete large amounts of (monoclonal) antibody 3. Some differentiate into B memory cells → remain in blood for secondary immune response
89
What are antibodies?
● Quaternary structure proteins (4 polypeptide chains) ● Secreted by B lymphocytes eg. plasma cells in response to specific antigens ● Bind specifically to antigens forming antigen-antibody complexes
90
Describe the structure of an antibody
91
Explain how antibodies lead to the destruction of pathogens
● Antibodies bind to antigens on pathogens forming an antigen-antibody complex ○ Specific tertiary structure so binding site / variable region binds to complementary antigen ● Each antibody binds to 2 pathogens at a time causing agglutination (clumping) of pathogens ● Antibodies attract phagocytes ● Phagocytes bind to the antibodies and phagocytose many pathogens at once
92
Explain the differences between the primary & secondary immune response
● Primary - first exposure to antigen ○ Antibodies produced slowly & at a lower conc. ○ Takes time for specific B plasma cells to be stimulated to produce specific antibodies ○ Memory cells produced ● Secondary - second exposure to antigen ○ Antibodies produced faster & at a higher conc. ○ B memory cells rapidly undergo mitosis to produce many plasma cells which produce specific antibodies
93
What is a vaccine?
● Injection of antigens from attenuated (dead or weakened) pathogens ● Stimulating formation of memory cells
94
Explain how vaccines provide protection to individuals against disease
1. Specific B lymphocyte with complementary receptor binds to antigen 2. Specific T helper cell binds to antigen-presenting cell and stimulates B cell 3. B lymphocyte divides by mitosis to form clones 4. Some differentiate into B plasma cells which release antibodies 5. Some differentiate into B memory cells 6. On secondary exposure to antigen, B memory cells rapidly divide by mitosis to produce B plasma cells 7. These release antibodies faster and at a higher concentration
95
Explain how vaccines provide protections for populations against disease
● Herd immunity - large proportion of population vaccinated, reducing spread of pathogen ○ Large proportion of population immune so do not become ill from infection ○ Fewer infected people to pass pathogen on / unvaccinated people less likely to come in contact with someone with disease
96
Explain the effect of antigen variability on disease and disease prevention
● Antigens on pathogens change shape / tertiary structure due to gene mutations (creating new strains) ● So no longer immune (from vaccine or prior infection) ○ B memory cell receptors cannot bind to / recognise changed antigen on secondary exposure ○ Specific antibodies not complementary / cannot bind to changed antigen
97
Describe the structure of a HIV particle
- Lipid envelope - RNA - Reverse transcripatse - Capsid - Attachment protein
98
Describe the replication of HIV in helper T cells
1. HIV attachment proteins attach to receptors on helper T cell 2. Lipid envelope fuses with cell-surface membrane, releasing capsid into cell 3. Capsid uncoats, releasing RNA and reverse transcriptase 4. Reverse transcriptase converts viral RNA to DNA 5. Viral DNA inserted / incorporated into helper T cell DNA (may remain latent) 6. Viral protein / capsid / enzymes are produced a. DNA transcribed into HIV mRNA b. HIV mRNA translated into new HIV proteins 7. Virus particles assembled and released from cell (via budding)
99
Explain how HIV causes the symptoms of acquired immune deficiency syndrome (AIDS)
● HIV infects and kills helper T cells (host cell) as it multiplies rapidly ○ So T helper cells can’t stimulate cytotoxic T cells, B cells and phagocytes ○ So B plasma cells can’t release as many antibodies for agglutination & destruction of pathogens ● Immune system deteriorates → more susceptible to (opportunistic) infections ● Pathogens reproduce, release toxins and damage cells
100
Explain why antibiotics are ineffective against viruses
Viruses do not have structures / processes that antibiotics inhibit: ● Viruses do not have metabolic processes (eg. do not make protein) / ribosomes ● Viruses do not have bacterial enzymes / murein cell wall
101
What is a monoclonal antibody?
● Antibody produced from genetically identical / cloned B lymphocytes / plasma cells ● So have same tertiary structure
102
Explain how monoclonal antibodies can be used in medical treatments
● Monoclonal antibody has a specific tertiary structure / binding site / variable region ● Complementary to receptor / protein / antigen found only on a specific cell type (eg. cancer cell) ● Therapeutic drug attached to antibody ● Antibody binds to specific cell, forming antigen-antibody complex, delivering drug ## Footnote Some monoclonal antibodies are also designed to block antigens / receptors on cells
103
Explain how monoclonal antibodies can be used in medical diagnosis
● Monoclonal antibody has a specific tertiary structure / binding site / variable region ● Complementary to specific receptor / protein / antigen associated with diagnosis ● Dye / stain / fluorescent marker attached to antibody ● Antibody binds to receptor / protein / antigen, forming antigen-antibody complex
104
Explain the use of antibodies in the ELISA (enzyme-linked immunosorbent assay) test to detect antigens
Example method 1 (direct ELISA): 1. Attach sample with potential antigens to well 2. Add complementary monoclonal antibodies with enzymes attached → bind to antigens if present 3. Wash well → remove unbound antibodies (to prevent false positive) 4. Add substrate → enzymes create products that cause a colour change (positive result) Example method 2 (sandwich ELISA): 1. Attach specific monoclonal antibodies to well 2. Add sample with potential antigens, then wash well 3. Add complementary monoclonal antibodies with enzymes attached → bind to antigens if present 4. Wash well → remove unbound antibodies (to prevent false positive) 5. Add substrate → enzymes create products that cause a colour change (positive result)
105
Explain the use of antibodies in the ELISA test to detect antibodies
Example method (indirect ELISA): 1. Attach specific antigens to well 2. Add sample with potential antibodies, wash well 3. Add complementary monoclonal antibodies with enzymes attached → bind to antibodies if present 4. Wash well → remove unbound antibodies 5. Add substrate → enzymes create products that cause a colour change (positive result)
106
Suggest the purpose of a control well in the ELISA test
● Compare to test to show only enzyme causes colour change ● Compare to test to show all unbound antibodies have been washed away
107
Suggest why failure to thoroughly wash the well can result in a false positive in the ELISA test
● Antibody with enzyme remains / not washed out ● So substrate converted into colour product
108
Discuss some general ethical issues associated with the use of vaccines and monoclonal antibodies
● Pre-clinical testing on / use of animals - potential stress / harm / mistreatment ○ But animals not killed & helps produce new drugs to reduce human suffering ● Clinical trials on humans - potential harm / side-effects ● Vaccines - may continue high risk activities and still develop / pass on pathogen ● Use of drug - potentially dangerous side effects
109
Suggest some points to consider when evaluating methodology relating to the use of vaccines and monoclonal antibodies
● Was the sample size large enough to be representative? ● Were participants diverse in terms of age, sex, ethnicity and health status? ● Were placebo / control groups used for comparison? ● Was the duration of the study long enough to show long-term effects? ● Was the trial double-blind (neither doctor / patient knew who was given drug or placebo) to reduce bias?
110
Suggest some points to consider when evaluating evidence and data relating to the use of vaccines and monoclonal antibodies
● What side effects were observed, and how frequently did they occur? ● Was a statistical test used to see if there was a significant difference between start & final results? ● Was the standard deviation of final results large, showing some people did not benefit? ● Did standard deviations of start & final results overlap, showing there may not be a significant difference? ● What dosage was optimum? Does increasing dose increase effectiveness enough to justify extra cost? ● Was the cost of production & distribution low enough?