2. Chromosomes (1) Flashcards

(78 cards)

1
Q

DNA is packaged into a structure called the _______. The chromosomes are found within the nucleus of the cell.

A

chromosome

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2
Q

Homologous chromosomes:

A

Set of one maternal and one paternal chromosome that pair up with each other inside a cell during cell division.

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3
Q

Sister chromatids:

A

Refers to the identical copies (chromatids) formed by the DNA replication of a chromosome, with both copies joined by a common centromere.

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4
Q

Centromere:

A

Essential to the division of cells and ensure
the accurate segregation of chromosomes.

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5
Q

Telomeres:

A

A region of repetitive nucleotide sequences
at each end of a chromosome, which protects the end
of the chromosome from deterioration or from fusion
with neighbouring chromosomes.

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6
Q

Types of chromosomes
▣ Chromosomes are classified according to the position of the centromere: (4)

A
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7
Q

Visualization of the type of chromosomes:

A
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8
Q

What are the types of Cytogenetic tests? (5)

A
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9
Q

What is cytogenic test resolution?

A
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10
Q

What is the Karyotype? (4)

A

▣ A karyotype is an individual’s collection of
chromosomes
▣ It is the number and appearance of chromosomes in
the nucleus of a eukaryotic cell
▣ The term also refers to a laboratory technique that
produces an image of an individual’s chromosomes
▣ Involves the isolation, staining and visual examination
of chromosomes

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11
Q

What is the cell cycle?

A
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12
Q

Karyotype technique: (3)

A
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13
Q

How are karyotypes cultured? (3)

A
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14
Q

How are karyotypes harvested? (3)

A
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15
Q

How are karyotypes analysed? (3)

A
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16
Q

What are the types of staining? (3)

A
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17
Q

Metaphase spread vs Karyogram:

A
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18
Q

Karyotype resolution
▣ Total # of bands ______
▣ Depends on how _______ chromosomes
are- metaphase or prophase
▣ Generally 350-____

A

visible
condensed
550

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19
Q

What is the ISCN?

A

International Standard for Cytogenic Nomenclature

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20
Q

ISCN Abbreviations:

A
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21
Q

What is Fluorescent In-Situ Hybridization (FISH)? (2)

A

▣ Detects small deletions/duplications which are not
visible using conventional cytogenetic techniques
▣ Molecular cytogenetic method used to detect and
localize the presence or absence of specific DNA
sequences on chromosomes

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22
Q

FISH
▣ Need to know what you are looking for
▣ Utilizes ________ base pairing
▣ _______ bind to region of interest

A

complimentary
probes

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23
Q

FISH technique: (4)

A
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24
Q

What is the denaturing process of FISH? (3)

A

▣ To generate single stranded DNA
▣ Formamide and ethanol
▣ Heat- water bath or hotplate

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25
What is the probing process of FISH? (2)
▣ Specifically designed short section of single- stranded DNA ▣ Fluorescently labelled to enable visualisation when bound
26
What is the hybridising process of FISH? (2)
▣ Binding (re-annealing) of probe and sample single-stranded DNA ▣ Heat and humidity
27
What is the analysing process of FISH? (5)
▣ Visualise using fluorescent microscope ▣ Each hybridised probe is visualised as a distinct signal ▣ Control- different colour fluorescence ▣ Analyse multiple cells ▣ Deletion <2 signals; duplication >2 signals
28
What are the uses of FISH? (3)
▣ Microdeletions and duplications ▣ Confirm rearrangements ▣ ID origin of material (ring chromosome/ satellite chromosome)
29
How are microdeletions visualised?
30
22q11 microdeletion:
31
1p36 duplication:
32
Translocation:
33
Marker chromosome:
34
Karyotype vs FISH: (7)
35
Normal somatic cell:
Diploid (46 chromosomes). Contains 2 haploid chromosome sets.
36
Normal gamete:
Haploid (23 chromosomes)
37
Types of numerical abnormalities Polyploidy: (2)
▣ More than 2 haploid chromosome sets ▣ Example: triploidy (3 haploid chromosome sets = 69 chromosomes)
38
Types of numerical abnormalities Aneuploidy: (3)
▣ Gain or loss of one (or more) chromosomes ▣ Example: trisomy (46 + 1 = 47 chromosomes) ▣ Example: monosomy (46 – 1 = 45 chromosomes)
39
▣ Normal female: 46, XX ▣ Normal male: 46, XY ▣ Triploidy female: 69, XXX ▣ Triploidy male: ▣ Trisomy: ▣ Monosomy: ▣ Mosaic:
▣ Triploidy male: 69, XXY or 69, XYY ▣ Trisomy: 47, XY, +21 ▣ Monosomy: 45, XX, -21 ▣ Mosaic: 46, XX/47, XX, +21
40
What does Non-disjunction during meiosis result in? (2)
▣ Non-disjunction in meiosis I □ Two homologous chromosomes fail to separate □ Results in trisomic or nullisomic embryos ▣ Non-disjunction in meiosis II □ Two sister chromatids don’t separate □ Results in trisomic or nullisomic embryos
41
Mechanisms resulting in polyploidy ▣ Caused by fertilisation _________.
Abnormalities
42
▣ Digyny:
□ Diploid ovum (as a result of non-expulsion of the second polar body, for example) is fertilised by a haploid spermatozoa
43
▣ Diandry: (2)
□ Fertilisation of one oocyte by two spermatozoa □ Four times more frequent than digyny
44
Abnormal fertilisation resulting in polyploidy:
45
What is Mosaicism? (2)
□ Occurs when there are two or more different cell lines present □ The different cell lines have different karyotypes (chromosome arrangements)
46
What is Chimerism? (2)
□ Two or more cell lines present originating from two or more zygotes □ May arise from early fusion
47
What is Trisomy 21 (Down syndrome)? (3)
48
Clinical features of Down syndrome: (8)
▣ Characteristic dysmorphic features ▣ Intellectual delay ▣ Global developmental delay ▣ Hypotonia ▣ Congenital heart defects ▣ Hearing loss ▣ Vision problems, cataracts ▣ Hypothyroidism
49
What is Trisomy 13 (prev. Patau syndrome)?
50
What is Trisomy 13 (prev. Patau syndrome)?
51
What is Turner syndrome?
52
What is Klinefelter's syndrome?
53
▣ A chromosome imbalance due to structural changes within the chromosome, such as: (7)
□ Deletions □ Duplications □ Translocations □ Inversions □ Insertions □ Ring chromosomes □ Isochromosomes
54
▣ One chromosome can have multiple structural abnormalities ▣ Usually, the total number of chromosomes is normal ▣ There is a change in their structure: (3)
□ Missing □ Extra □ Switched – in a different place
55
What is a deletion? (3)
▣ Part of the chromosome is missing or deleted □ Terminal or interstitial deletion ▣ Some genetic material is missing □ Can cause syndromic features □ Depends on the genes involved in deletion ▣ Sporadic or dominant □ If dominant: 50% recurrence risk
56
How can you test for a deletion? (4)
Test: FISH, Array, MLPA or karyotype
57
What are Interstitial and terminal deletions?
58
What are some syndromes associated with deletions? (3)
59
What is a duplication? (3)
▣ Part of the chromosome is duplicated □ Terminal or interstitial duplication □ Direct (tandem) or inverted ▣ Results in extra genetic material □ Severity depends on the genes involved □ Less severe than deletions ▣ Sporadic or inherited □ If inherited: 50% recurrence risk
60
How can you test for duplications? (4)
Test: FISH, Array, MLPA or karyotype
61
What are interstitial and terminal duplications?
62
What are the syndromes associated with duplications?
63
What is a translocation: Reciprocal? (3)
▣ Exchange of material between chromosomes ▣ Balanced: □ No loss or gain of genetic material □ Individuals are usually phenotypically normal ▣ Unbalanced: □ Gain or loss of genetic material – severity depends on size □ Can be inherited from a balanced parent – recurrence is complicated
64
How do you test for a reciprocal translocation?
Array if unbalanced or karyotype if balanced
65
What is a Translocation: Robertsonian? (2)
66
How do you test for a robertsonian translocation?
Karyotype
67
Robertsonian vs reciprocal translocation:
68
What are Recurrent miscarriages?
69
What is an inversion? (3)
▣ Portion of a chromosome broke off, inverted and reattached ▣ Pericentric or paracentric ▣ If isolated the individual is often phenotypically normal □ Can be a ‘normal variant’
70
How do you test for an inversion?
Karyotype
71
What are the types of inversions? (2)
72
What is an Insertion? (3)
▣ Portion of a chromosome broke off and is inserted elsewhere ▣ Interchromosomal or intrachromosomal ▣ Direct insertion or inverted insertion
73
How do you test for an insertion?
Karyotype
74
What is a ring chromosome? (5)
▣ Portion of a chromosome broke off and formed a ring ▣ Can happen with or without loss of genetic material ▣ Very rare ▣ Often severe ▣ Usually sporadic
75
How do you test for ring chromosomes?
Karyotype
76
What is an isochromosome? (2)
▣ Formed by a mirror image copy of a chromosome segment ▣ Results in a gain and loss of genetic material
77
How do you test for isochromosomes? (4)
FISH, Array, MLPA or karyotype
78
What are some syndromes associated with isochromosomes?