2.1 Classification + Biodiversity Flashcards

(61 cards)

1
Q

What is classification?

A

Classification is the organisation of living organisms into groups based on accepted principles.

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2
Q

What is phylogenetic classification?

A

Phylogenetic classification groups organisms based on their evolutionary relatedness. Organisms in the same group have a more recent common ancestor with each other.

All organisms share common ancestors.

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3
Q

What is a branch of evolution?

A

A branch of evolution is when an organism has a series of mutations that leads to the development of new species.

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4
Q

What is the phylogeny of an organism?

A

The phylogeny of an organism reflects all the evolutionary branches that led up to its existence.

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5
Q

How can phylogenetic relationships of different species be represented?

A

Phylogenetic relationships of different species can be represented by a Phylogenetic tree.

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6
Q

Explain what the tips of branches, branch points and trunks represent in a phylogenetic tree.

A

Living organisms are at the tips of the branches.

Ancestral species are in the branches and trunks.

Common ancestors are found at the branch points

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7
Q

The further up the diagram you go… (Phylogenetic Tree)

A

The further up the diagram you go, the further forward in time. The species at the top exist now.

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8
Q

Define hierarchy

A

A hierarchy is a system of ranking in which small groups are nested components of larger groups.

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9
Q

Explain the hierarchical classification system in terms of taxa.

A

A hierarchical system has been devised for all living organisms. Each grouping in the system is a taxon (plural=taxa). Bigger taxa contain smaller taxa. Within each taxon, organisms are more similar to each other and more closely related than to organisms outside the taxon. Taxa are discrete, an organism belongs in one taxon and in no other.

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10
Q

What is the hierarchy of biological classification?

A

Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species.

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11
Q

Why do we need a classification system?

A

A phylogenetic classification system allows us to infer evolutionary relationships. If two organisms are so similar that we put them in the same taxon, we can infer that they are closely related.

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12
Q

Explain why classification systems are “tentative”

A

The system of classification depends on our current knowledge.

Any system we use is tentative and may be altered as our knowledge advances.

E.g. Analysis of DNA.

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13
Q

What is a domain and how are they defined?

A

A domain is the largest taxon and all living things belong in one of the three domains.

Domains are defined on the basis of rRNA base sequences and DNA base sequences.

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14
Q

What is the archaea domain?

A

Archaea means ancient. These are bacteria and often have unusually metabolism. Many are extremophiles which include a lack of molecular oxygen, very high pressure, very high temperatures or a very high/low pH.

Archaea have 70s ribosomes, circular DNA, unusual metabolisms and no membrane bound organelles.

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15
Q

What is the eubacteria domain?

A

Eubacteria are true bacteria and are prokaryotes, some Eubacteria can also be extremophiles.

Eubacteria have 70s ribosomes, circular DNA and no membrane bound organelles.

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16
Q

What is the eukarya domain?

A

Eukarya include all eukaryotic organisms, there are four eukaryotic kingdoms : Animalia, Plantae, Fungi and Protoctista.

Eukaryotes have 80s ribosomes, linear DNA is in nucleus and membrane bound organelles.

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17
Q

What is the 3 domain system of classification based on?

A

The 3 domain system of classification is based on molecular biology techniques, as opposed to observed physical features in the 5 Kingdoms.

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18
Q

What is the 5 Kingdom System used for?

A

This system places organisms into groups based on their physical appearance and was used before molecular biology techniques were available. All the bacteria from the domains Eubacteria and Archaea are in one kingdom (Prokaryota). The other 4 kingdoms contain the Eukaryotic organisms.

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19
Q

Explain prokaryotes and what they have

A

Prokaryote : Prokaryota are microscopic.

Prokaryotic, Single-Celled, Mesosome in some, Photosynthetic lamellae in some, 70s ribosomes, peptidoglycan cell wall, saprotrophic, parasitic or autotrophic,

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20
Q

What do animalia have?

A

Eukaryotic, Multicellular, Nucleus, Mitochondria, 80s ribosomes, ER, small scattered and temporary vacuole, Heterotrophic, Nervous Coordination.

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21
Q

Explain protoctista and what they have

A

(Some are more plant-like/animal-like) : The outliers.

Eukaryotic, Single-Celled or Multicellular, Nucleus, Mitochondria, Some have chloroplasts, 80s Ribosomes, ER, some have vacuoles, Some have a cellulose cell wall, Some autotrophic/heterotrophic.

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22
Q

Explain Plantae and what they have

A

(Flowering/Non-flowering) : Mosses, horsetails and ferns reproduce with spores whilst conifers and flowering plants reproduce with seeds.

Eukaryotic, Multicellular, Nucleus, Mitochondria, Chloroplasts, 80s Ribosomes, ER, Large central permanent vacuole, Cellulose cell wall, Autotrophic.

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23
Q

Explain fungi and what they have

A

Yeasts are single-celled.

Eukaryotic, Single-celled/hyphal, Nucleus, Mitochondria, 80s Ribosomes, ER, Large central permanent vacuole, Chitin cell wall, Saprotrophic/parasitic.

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24
Q

What’s classification used for?

A

Classification is a human concept developed for convenience and allows us to infer evolutionary relationships. If a new organism is discovered, then we can use its characteristics to predict some of its other characteristics. It also makes communication easier.

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25
Define species
A species is a group of organisms that share a large number of physical features and can interbreed to produce fertile offspring.
26
What is the binomial system?
The Binomial system gives organisms a unique name with two parts, the genus and the species.
27
Benefits of a binomial system?
Unambiguous naming Based on latin which is a universal language so it can be used all over the world Implies that two species sharing part of their name are closely related
28
What are homologous structures?
Homologous structures have a similar arrangement of component parts and share an evolutionary origin, therefore they're closely related The structures have often evolved to have different functions. The Pentadactyl Limb (5 Digits)
29
How do homologous structures arise?
Homologous structures arise due to divergent evolution where organisms share a common ancestor but due to different selection pressures they evolve different structures in order to survive in different habitats. Selection Pressures : External agents that affect the organism's ability to survive in a given environment.
30
What are analogous structures?
Analogous structures have a similar function but different structures. Organisms with analogous structures do not share an evolutionary origin and are therefore not closely related. Butterfly and Bat Wings
31
How do analogous structures arise?
Analogous structures arise due to convergent evolution where organisms do not share a common ancestor but due to similar selection pressures they evolve similar structures in order to survive in similar habitats.
32
4 biochemical methods to assess relatedness
DNA Sequencing DNA Hybridisation Amino Acid Sequences Immunology
33
Explain DNA Sequencing
During the course of evolution, species undergo changes in their DNA base sequences which accumulate until the organisms are so different that they are considered to be different species. More closely related species show more similarity in their DNA base sequences than those more distantly related. DNA analysis has confirmed evolutionary relationships and corrected mistakes made in classification based on physical characteristics.
34
Explain DNA Hybridisation
Involves comparing the DNA base sequences of 2 species. DNA from both is extracted, separated into single strands and cut into fragments. The fragments from the two species are mixed and where they have complementary base sequences they hybridise together.
35
Explain Amino Acid Sequencing
The sequence of amino acids in proteins is determined by the DNA base sequence. The degree of similarity in the amino acid sequence of the same protein in two species will reflect how closely related they are.
36
Explain Immunology techniques
The proteins of different species can be compared using immunological techniques. If you mix the antigens of one species with specific antibodies of another, the antigens and antibodies coagulate. The closer the evolutionary relationship, the more coagulation occurs.
37
What is Sexual Dimorphism?
Sexual dimorphism is when males and females of the same species look different.
38
Define biodiversity
Biodiversity is the number of species and the number of individuals in each species in a specified region.
39
What is spatial variation?
The number of species and the number of organisms depend somewhat on the environment. More plants grow at high light intensity, so a bright environment can support more herbivores and therefore more carnivores than a dull one. More energy flowing through an ecosystem produces more species and more individuals which means that equatorial regions have a much higher biodiversity than polar regions.
40
What are biodiversity hotspots?
Biodiversity hotspots are where there's the most biodiversity.
41
What is succession?
Over time a community of organisms changes its habitat making it more suitable for other species. The change in the composition of a community over time is called 'succession'. This increases animal biodiversity but ultimately decreases plant biodiversity.
42
3 ways there's variation over time
Succession Natural Selection Human Influence
43
What is extinction?
The permanent loss of all members of a species.
44
3 Human Influences of Biodiversity
Agriculture and Misuse of Land Deforestation Overfishing
45
Explain how agriculture and misuse of land affects biodiversity
Monocropping where the area is dominated by one species, which reduces the number of niches available but ensures a large biomass of the desired species can be produced in any given area. Desertification : Overgrazing of land by cattle causes fertile land to form deserts.
46
Define niche
A niche is the role and position a species has in its environment, including all the interactions with the biotic and abiotic factors of its environment.
47
Define overfishing
Removal of a species of fish from a body of water at a rate that the species cannot replenish in time.
48
List some human activities that enhance biodiversity
Conservation areas Captive breeding programmes Removal of invasive species Seed banks Habitat restoration
49
What is the significance of reduced biodiversity?
Many plants and animals support human civilisation : - Small numbers of plants provide staple foods - Medicinal drugs are derived from plant and fungi - Living organisms provide raw materials such as wood, rubber and cotton. As biodiversity decreases we lose the potential for discovering new medicinal drugs and raw materials are compromised too.
50
2 ways we can assess biodiversity with polymorphic loci
Number of alleles Proportion of alleles
51
Explain how we can use the number of alleles to assess biodiversity with polymorphic loci
A gene's position on a chromosome is its locus. A locus shows polymorphism if it has two or more alleles. If a gene has more alleles its locus is more polymorphic than if there were fewer alleles.
52
Explain how we can use the proportion of alleles to assess biodiversity with polymorphic loci
If we consider the whole gene pool, and 98% of all the alleles of a particular gene are the same recessive allele then there is low biodiversity for that gene.
53
What is a molecular assessment of biodiversity?
DNA fingerprinting
54
Explain how DNA fingerprinting works (Method)
The DNA of organisms does not all code for protein. Like all DNA, non-coding sequences undergo mutation so individuals acquire different base sequences. Sometimes it is only one base that differs. These single base differences are called SNPs (Single Nucleotide Polymorphisms). There are also regions of DNA that vary. These unique lengths of non-coding DNA are called hypervariable regions (HVR) or short tandem repeats (STRs). These differences can be seen in a genetic profile/DNA fingerprint.
55
Explain how you can use the results from DNA fingerprinting
Comparing the number and position of the bands in the DNA profiles of a population indicates how similar or different their DNA sequences are. The more SNPs and HVRs a population has, the more differences there are in its DNA fingerprints. More differences indicate a greater biodiversity.
56
Define Natural Selection
Natural selection is the gradual process in which inherited characteristics become more or less common in a population, in response to the environment determining the breeding success of individuals possessing those characteristics.
57
Explain the 5 stages of natural selection (mutations)
Mutations cause differences in DNA Variation : Different physical appearance, biochemical function or behaviour Competitive Advantage : Some are more suited to the environment than other and out-compete rivals for resources Survival of the fittest : Those more suited to the environment survive better and reproduce Pass advantageous alleles to offspring : Offspring inherit the advantageous alleles.
58
What are the 3 traits that have adaptations?
Anatomical Traits Physiological Traits Behavioural Traits
59
Examples of anatomical traits
Aquatic animals have more streamlined bodies. Without this body shape they would be less efficient at catching food or escaping predators. Some plants have flowers with honey or nectar guides or beelines which indicate the centre of the flower, the source of nectar and pollen for visiting insects. A flower without these lines would attract fewer pollinators.
60
Examples of physiological traits
Mammals and birds are endothermic and must avoid wasting energy trying to maintain body temperature in the cold. During hibernation, mammals may drop their body temperatures to use less energy. The leaves fall off deciduous plants when the temperature and light intensity decrease in autumn. This way, they do not lose water by transpiration and risk dehydration throughout the winter when water may be frozen and so they survive the cold weather.
61
Examples of behavioural traits
Like many plants, they flower in spring when pollinating insects emerge. Mating rituals in animals increase an animal's chance of reproducing.