bio213 TTK Flashcards

0
Q

Fitness

A

Getting copies of your genes into the next generation.

Depends on:

  • survival
  • reproduction
  • environment (abiotic / biotic)
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1
Q

Evolution

A

Change in the genetic makeup of a population over time in response to environment

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2
Q

Adaptation

A

inherited characteristic of an organism that enhances its survival and reproduction in a certain environment

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3
Q

Natural selection vs evolution

A

NS acts on individuals, but a population evolves.

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4
Q

Homologous structures

A

structures in different species that are similar due to common ancestry (ex: vertebrate forelimbs)

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5
Q

Population

A

Members of a species living in the same area that could interbreed.

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6
Q

Allele fixation

A

Only one allele present for a particular gene in entire population (so all individuals are homozygous for that gene)

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7
Q

Hardy-Weinberg equilibrium

A

Allele & genotype frequencies do not change from generation to generation solely due to Mendelian inheritance patterns

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8
Q

Gene pool

A

the aggregate of all copies of every type of allele at all loci in every individual in a population

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9
Q

Microevolution

A

evolutionary change below the species level; change in allele freq’s in a population over generations

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10
Q

Genetic drift

A

Unpredictable fluctuations in allele frequencies from one generation to the next, esp. in small populations. Ex: founder effect, bottleneck effect.

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11
Q

Macroevolution

A

evolutionary change above the species level; ex: speciation, impacts of mass extinction

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12
Q

Gene flow

A

the transfer of alleles from one generation to another, resulting from the movement of fertile individuals or their gametes (migration!)

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13
Q

Bottleneck effect

A

A severe drop in population size resulting by chance in over representation of some alleles and under rep of others.

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14
Q

Founder effect

A

When a few individuals become isolated from a larger population and establishes a new population whose gene pool differs from the source pop

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15
Q

directional selection

A

natural selection in which individuals at one end of the phenotypic range survive or reproduce more successfully than the others

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16
Q

stabilizing selection

A

natural selection in which intermediate phenotypes survive or reproduce more successfully than do extreme phenotypes

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17
Q

diversifying (disruptive) selection

A

natural selection in which extreme phenotypes survive or reproduce more successfully than do intermediates

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18
Q

frequency-dependent selection

A

common vs. rare phenotype swap common/rareness due to natural selection (ex: R/L-side attackers vs. L/R-side awareness)

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19
Q

sexual selection

A

a form of selection in which individuals with certain inherited characteristics are more likely than other individuals to obtain mates

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20
Q

biological species concept

A

individuals of the same species can successfully interbreed & produce viable, fertile offspring who breed

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21
Q

reproduction barriers

A

pre-zygotic:

  • temporal isolation
  • habitat isolation
  • behavioral isolation (ex: mating dances)
  • mechanical isolation (it doesn’t fit!)
  • gametic isolation (gametes die before uniting)

post-zygotic:

  • hybrid inviability (zygote fails to develop)
  • hybrid sterility (mules)
  • hybrid breakdown (offspring of hybrids are weak/infertile)
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22
Q

adaptive radiation

A

multiple new species arise from an original population in a relatively short time

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23
Q

phylogenetic tree

A

a branching diagram that represents a hypothesis about the evolutionary history of a group of organisms

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24
Q

monophyletic group

A

a group of taxa that consists of a common ancestor and all of its descendants

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25
Q

ancestral traits

A

common to all descendents

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26
Q

derived traits

A

unique to descendents

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27
Q

autotroph

A

an organism that obtains organic food molecules w/o eating other organisms or substances derived from other organisms; uses energy from the sun or from oxidation of inorganic substances to make organic molecules from inorganic ones

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28
Q

heterotroph

A

organism that obtains organic food molecules by eating other organisms or substances derived from them

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29
Q

thermophile

A

high temp loving organisms (45-122°C)

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30
Q

halophile

A

salt-loving organisms

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31
Q

methanogen

A

organism that produces methane as a waste product of the way it obtains energy; all known are in Archaea

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32
Q

cyanobacteria

A

bacteria that obtain their energy through photosynthesis

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33
Q

nitrogen fixation

A

the conversion of atmospheric nitrogen to ammonia

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34
Q

decomposition

A

rotting; the process by which organic substances are broken down into simpler forms of matter

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35
Q

bioremediation

A

the use of organisms to detoxify and restore polluted and degraded ecosystems

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36
Q

prokaryote

A

organism with prokaryotic cells, which lacks membranes around its nucleus and organelles; Bacteria & Archaea

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37
Q

binary fission

A

method of asexual reproduction by “division in half.” Mitosis is involved in singe-celled euks that undergo fission, but not in proks.

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38
Q

cellular metabolism

A

life-sustaining chemical transformations within cells of living organisms

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39
Q

allopatric speciation

A

different home

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40
Q

sympatric speciation

A

same home

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41
Q

Protozoa

A
animal-like protists; 
usually motile (flagella, cilia, or pseudopodia);
heterotrophic (internal)
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42
Q

Algae

A

plant-like protists
(ex: dinoflagellate; diatom w/ silicate cell walls; seaweed);
usually non-motile;
cell walls;
autotrophic: photosynthesis in chloroplasts (all have chlorophyll-A in photosystem, green/brown/red due to other pigments)

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43
Q

Slime “molds”

A

fungal-like & animal-like protists;
reproduce by mushroom-like, spore-producing structures;
… but move/eat like protozoa

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44
Q

Bacterial benefits (see 4/23 notes)

A
  • digestive & skin mutualists;
  • cyanobacteria (O2 production): bottom of food pyramid
  • decomp of dead organic matter (glucose -> CO2/H2O)
  • fermentation
  • plant mutualists (ex: Rhizobium)
    +++++ Nitrogen Fixation (via nitrogenase): N2 -> NH4 & NO3
  • bioremediation (thx to metabolic diversity)
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45
Q

Chitin

A

structural polysaccharide found in fungal cell walls & arthropod exoskeletons

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46
Q

Spore

A

plant/alga: haploid cell produced in sporophyte by meiosis;

fungi: haploid cell, produced sexually or asexually, produces mycelium after germination

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47
Q

Hyphae

A

connected filaments that collectively make up the mycelium of a fungus

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49
Q

Dikaryotic

A

a fungal mycelium with two haploid nuclei per cell, one from each parent

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50
Q

Mycorrhizae

A

mutualistic association of plant roots and fungus

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51
Q

Lichen

A

mutualistic association between a fungus and photosynthetic alga or cyanobacterium

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52
Q

Decomposer vs parasite

A

absorbing nutrients from non-living organic material (detrivore) VS. feeding on cell contents, tissues, or body fluids of another species while in or on the host organism (harm but usually do not kill).

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53
Q

Glomeromycetes

A

Glomeromycota: distinct branching form of mycorrhizae called arbuscular mycorrhizae

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53
Q

Chytrids

A

Chytridiomycota: mostly aquatic w/ flagellated zoospores, and representing an early-diverging fungal lineage

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54
Q

protists

A

euks that are not plants, animals, or fungi

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55
Q

Basidiomycetes

A

Basidiomycota: aka “club fungus,” clublike shape of basidium (reproductive appendage, produces spores on the gills)

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56
Q

zygosporangium

A

multinucleate structure in which karyogamy & meiosis occur.

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57
Q

ascocarp

A

fruiting body of a sac fungus (ascomycete)

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58
Q

Ascomycetes

A

Ascomycota: aka “sac fungus,” from saclike structure in which the spores develop (ascus/asci)

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60
Q

Chlorophyll a

A

a photosynthetic pigment that participates directly in the light reactions, which convert solar energy to chemical energy

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61
Q

Chlorophyll b

A

an accessory photosynthetic pigment that transfers energy to chlorophyll a.

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62
Q

Carotenoids

A

accessory pigments, yellow or orange, in chloroplasts of plants & some proks. Absorb wavelengths chlorophyll cannot, broadening range spectrum of colors that can drive photosynthesis.

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63
Q

Cellulose

A

structural polysaccharide of plant cell walls; consists of glucose monomers joined by (beta) glycosidic linkages.

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64
Q

Lignin

A

a hard material embedded in the cellulose matrix of plant cell walls, providing structural support in terrestrial species.

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65
Q

Starch

A

storage polysaccharide in plants, consisting of glucose monomers joined by (alpha) glycosidic linkages.

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66
Q

Rubisco

A

Ribulose bisphosphate carboxylase, enzyme that catalyzes first step of Calvin cycle, (binding CO2 to RuBP.

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67
Q

Green algae

A

photosynthetic protist, named for green chloroplasts that are similar in structure and pigment composition to land plants; paraphyletic group, some members of which are more closely related to land plants than to other green algae

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68
Q

Bryophyte

A

informal name for moss, hornwort, or liverwort; a nonvascular plant that lives on land but lacks some terrestrial adaptations of vascular plants

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69
Q

Seedless vascular plants

A

informal name for plants with vascular tissue, but no seeds; paraphyletic group that includes Lycophyta (club mosses & relatives) and Pterophyta (ferns & relatives)

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70
Q

Gymnosperms

A

vascular plant that bears naked seeds - not enclosed in protective chambers

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71
Q

Angiosperms

A

flowering plant, forms seeds inside protective chamber called an ovary

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72
Q

Cuticle

A

waxy covering on the surface of stems/leaves, preventing desiccation in terrestrial plants

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73
Q

Stoma (plural, stomata)

A

microscopic pore surrounded by guard cells in epidermis of leaves/stems, allowing gas exchange

74
Q

Vascular tissue

A

plant tissue consisting of cells joined into tubes that transport water and nutrients throughout plant body

75
Q

Pollen

A

in seed plants, a structure consisting of the male gametophyte enclosed w/in a pollen wall

76
Q

Seed

A

an adaptation in some terrestrial plants consisting of an embryo packaged along with a store of food w/in a protective coat

77
Q

Cell wall

A

a protective layer external to the plasma membrane in the cells of plants, proks, fungi, and some protists; polysaccharides are important structural components: cellulose (plants), chitin (fungi), peptidoglycan (bacteria)

78
Q

Plasmodesmata

A

open channels through cell wall, connects cytoplasm of adjacent plant cells, allowing water, small solutes, some larger molecules to pass between cells.

79
Q

Chloroplast

A

an organelle found in plants and photosynthetic protists that absorbs sunlight, uses it to drive synthesis of organic compounds from CO2 and H2O

80
Q

Chromoplast

A

colored plastids for pigment synthesis and storage

81
Q

Mitochondria

A

organelles in euk cells that serve as site of cellular respiration; use oxygen to break down organic molecules and synthesize ATP

82
Q

Meristematic tissue

A

remains embryonic as long as plant lives, allowing for indeterminate growth

83
Q

Epidermal tissue

A

dermal tissue system of non-woody plants; usually a single layer of tightly packed cells

83
Q

xylem vascular tissue

A

tubular dead cells that conduct most of the water/minerals up from the roots to the rest of the plant

84
Q

Ground tissue

A

neither vascular nor dermal, fulfills a variety of functions, such as storage, photosynthesis, and support.

85
Q

phloem vascular tissue

A

living cells arranged in elongated tubes, transport sugar and other organic nutrients throughout the plant

86
Q

root hair

A

a tiny extension of a root epidermal cell, growing just behind the root tip, increasing surface area for absorption of water and minerals

87
Q

stem

A

vascular plant organ consisting of alternating system of nodes/internodes that support the leaves and reproductive structures

88
Q

root

A

vascular plant organ that anchors the plant and enables it to absorb water and minerals from the soil

89
Q

leaf

A

main photosynthetic organ of vascular plants

90
Q

branch/lateral roots

A

root that arises from the pericycle (outermost layer of vascular cylinder) of an established root

91
Q

apical/terminal bud

A

bud at the tip of a plant stem

92
Q

lateral/axillary bud

A

structure that has the potential to form a lateral shoot, or branch; bud appears in the angle formed between leaf and stem

93
Q

node

A

a point along the stem of a plant at which leaves are attached

94
Q

internode

A

segment of a plant stem between the points where leaves are attached

95
Q

blade

A

flattened portion of a typical leaf

96
Q

petiole

A

stalk of a leaf, which joins the leaf to a node of the stem

97
Q

sheath

A

alt to petiole in which base of leaf envelops stem; found in grasses and many other monocots

98
Q

cotyledon

A

embryonic leaves (-> monocot, dicot, etc)

99
Q

vascular cambium

A

a cylinder of meristematic tissue in woody plants, adds layers of secondary vascular tissue called secondary xylem (wood) and secondary phloem

100
Q

secondary xylem / phloem

A

formed during secondary growth from vascular cambium; xylem (wood) to the inside, phloem to the outside;

101
Q

bark

A

all tissues external to the vascular cambium, consisting mainly of secondary phloem and layers of periderm

102
Q

wood

A

secondary xylem; composite of cellulose fibers (strong in tension) embedded in a matrix of lignin (resists compression)

103
Q

annual rings

A

result from new growth in vascular cambium; used in dendrochronology; 1 ring usually = 1 year

104
Q

stele

A

vascular tissue of a stem or root

105
Q

auxin (IAA)

A

class of plant hormone: indoleacetic acid; cell elongation, root formation, secondary growth, fruit growth

106
Q

cytokinin (CK)

A

class of plant hormone: retards aging; acts in concert w/ auxin to stimulate cytokinesis, influence pathway of differentiation, and control apical dominance

107
Q

gibberellin (GA)

A

class of plant hormone: stimulate growth in stem & leaves; trigger germination of seeds& breaking of bud dormancy; stimulate fruit development (w/ auxin)

108
Q

abscisic acid (ABA)

A

plant hormone: slows growth, often antagonizing effects of growth hormones; promotes seed dormancy & facilitates drought tolerance

109
Q

ethylene

A

gaseous plant hormone: involved in responses to physical stress, programmed cell death, leaf abscission, & fruit ripening

110
Q

defense hormones

A

systemin: wound response in Solanaceae family (nightshades: potato, tomato, eggplant, etc)

salicylic acid: signal mol, may be partially responsible for activating systemic acquired resistance to pathogens

111
Q

florigen

A

flowering signal, probably a protein, made in leaves under certain conditions, travels to SAMs, inducing them to switch from vegetative to reproductive growth

112
Q

phototropism

A

growth of a plant shoot towards or away from light (positive/negative phototropism)

113
Q

gravitropism

A

response of plant/animal to gravity

114
Q

phytochrome

A

photoreceptor (pigment) in plants that mostly absorbs red light and regulates any plant responses, like seed germination and shade avoidance

116
Q

soil texture

A

depends on size of soil particles: sand > silt > clay; silt/clay are small and have lots of surface area for adhesion/retention of water; Sand provides air spaces, but lets too much water through by itself

117
Q

soil structure

A

how the materials in soil hold together

118
Q

humus

A

soil organic matter

119
Q

pH

A

affects solubility and chemical form of nutrients in soil; most plants prefer slightly acidic, as high H+ concentration assists cation exchange

120
Q

cation exchange capacity

A

roots are negatively charged, so will attract cations that haven’t washed away

most imp cations: K, Mg, Ca, NH4, Fe(2+/3+), H+, Al;

most imp anions: NO3-, SO4 2-, PO4 3-

121
Q

stomata

A

pores in plant epidermis allowing gas exchange (O2/CO2), but also main source of water loss (95%); regulates transpiration rate

122
Q

cuticle

A

waxy coating on plant epidermal surface, prevents water loss

123
Q

guard cells

A

regulate opening/closing of stomatal pore via K+ in/out of vacuole (causing water to follow in/out)

124
Q

endodermis

A

innermost layer of cells in root cortex

125
Q

transpiration

A

loss of water through leaves (mostly through stomata)

126
Q

root pressure

A

push of xylem sap; generated by osmotic pump; causes guttation

only works when soil is quite wet and root system intact; highest pressures recorded only reach 1-2m high

127
Q

cohesion-tension hypothesis

A

transpiration provides the pull for the ascent of xylem sap

128
Q

water potential

A

water moves from higher (less negative) to lower (more negative) water potential;

influenced by: soil composition, gravity, osmotic potential (concentration gradients), pressure potential (of cell walls)

129
Q

vessels

A

short/wide xylem: dead, hollow, thick cell walls, large diameter; secondary cells walls of cellulose/lignin

130
Q

tracheids

A

long/thin xylem: dead, hollow, thick cell walls, smaller in diameter; secondary cells walls of cellulose/lignin

131
Q

fibers

A

xylem/phloem: dead, thick cell walls, for support;

NOT for water transport

132
Q

source (of sugar)

A

anything performing photosynthesis (leaf, stem) or breakdown of stored starch

133
Q

sink (of sugar)

A

anything consuming sugar (plant parts or other organisms -> predators / mutualists)

134
Q

pressure flow hypothesis

A

building of pressure at a source, and reduction of pressure at the sink, causing bulk flow of sap

135
Q

aphids

A

feed on phloem sap, but can’t digest quickly enough so pressure forces it out the back end

136
Q

sieve tube elements

A

phloem: alive!, conduits of sap translocation

136
Q

diploid

A

2n;

137
Q

companion cells

A

phloem: performs normal cell processes for sieve tube elements, and actively transports sugar molecules against their gradient into the tubes

138
Q

haploid

A

1n;

140
Q

gamete

A

cell that fuses w/ another cell during fertilization in sexually reproducing organisms

141
Q

zygote

A

initial cell that forms when two gametes fuse during sexual reproduction

142
Q

embryo

A

multicellular diploid eukaryote in earliest stage of development

143
Q

spore

A

a unit of asexual reproduction that may be adapted for dispersal and survival

144
Q

sporophyte

A

diploid multicellular stage in life cycle of plant or algae; produces spores by meiosis

144
Q

apoplast

A

everything external to plasma membrane of living cells: cell walls, extracellular spaces, interior of dead cells (vessels/tracheids)

145
Q

gametophyte

A

haploid multicellular adult stage in the alternation of generations during life cycle of land plants and algae; produced by mitotic cell division of spores, which are produced by meiosis in sporophytes; produces gametes by mitosis

146
Q

interspecific competition

A

competition between members of a single species

147
Q

intraspecific competition

A

competition between members of different species

148
Q

fundamental niche

A

all possible niches

149
Q

realized niche

A

niche the population actually occupies

150
Q

competitive exclusion principal

A

when pops of two similar species compete for same limited resource, one will use it more efficiently and have a reproductive advantage that will eventually lead to elimination of the other population

151
Q

mutualism

A

symbiotic relationship in which both participants benefit

152
Q

keystone species

A

central supporting hub of an ecosystem; loss results in ecosystem collapse; nitrogen-fixing bacteria, much? (rhizobium)

153
Q

consumer / food source relationships (4)

A

predator / prey
herbivore / primary producer
parasite / host
parasitoid / host

154
Q

abiotic

A

non-living; physical / chemical properties of an environment (temperature, humidity, precipitation, nutrients, etc)

155
Q

biotic

A

living factors - the organisms - of an environment

156
Q

community

A

all the organisms that inhabit a particular area; an assemblage of populations, interacting

157
Q

ecosystem

A

all organisms in an area + abiotic factors w/ which they interact; one or more communities and their physical environment

158
Q

density

A

of individuals per unit area or volume

159
Q

dispersion

A

pattern of spacing among individuals w/in boundaries of population (clumped, uniform, random)

160
Q

life history

A

traits that affect an organisms schedule of reproduction and survival

161
Q

exponential growth (density independent)

A

delta N / delta t = r(max) * N

162
Q

logistic growth (density dependent)

A

delta N / delta t = r(max) * N * ( K - N / K )

163
Q

per capita rate of increase (r)

A

difference between per capita birth rate and per capita death rate (# of births/deaths per unit of time)

164
Q

carrying capacity (K)

A

maximum population size that can be supported by the available resources

165
Q

metapopulation

A

group of spatially separated populations of one species that interact through migration (imi/emi)

166
Q

primary succession

A

no soil

167
Q

secondary succession

A

from soil

168
Q

disturbance

A

frequency / extent / intensity

169
Q

community response to disturbance

A

resistance / resilience

170
Q

producers

A

make the food (autotrophs)

171
Q

consumers

A

eat the food (primary, secondary, etc)

172
Q

trophic levels

A

degrees of separation from the sun

173
Q

biomagnification (of toxins)

A
  • fat soluble (otherwise would just pee it out)

- persistent, long-lived chemical

174
Q

biogeochemical cycling

A

cycling via biotic and abiotic elements

175
Q

species richness / evenness

A

factor of biodiversity (# of species and evenness of distribution)

176
Q

functional groups

A

collections of organisms based on morphological, physiological, behavioral, biochemical, environmental responses or on trophic criteria.

177
Q

productivity

A

amount of biological activity

178
Q

endemic species

A

confined to a specific geographic area

179
Q

edge effects

A

edges can have different conditions, and different organisms/niches, than the conditions on either side

180
Q

strategies to slow biodiversity loss

A
  • identify areas of high endemism
  • SLoSS debate: single large or several small
    • concerns: edge effects, matrix (space between habitats), corridors/tunnels, physical transportation of species to promote gene flow
181
Q

biodiversity (ways of measuring)

A

(greater diversity = greater resilience)

  • # of species
  • # of trophic levels
  • variety of genotypes
  • in diploid organisms: homozygosity vs. hetero (-> more diverse)
  • # of functional groups
  • at the population level: alleles, freq. of them
  • plant families
  • # of diff. community types (desert, high mountain, etc)