22- cloning and biotech Flashcards
(60 cards)
Why are isolated enzymes used instead of whole organism?
- Less wasteful; whole microorganisms use up substrate growing and reproducing, producing biomass rather than product. Isolated enzymes do not.
- More efficient; isolated enzymes work at much higher concs. than is possible when they are part of the whole microorganism.
- More specific; no unwanted enzymes present, so no wasteful side reactions take place.
- Maximise efficiency; isolated enzymes can be given ideal conditions for maximum product formation, which may differ from those needed for the growth of the whole microorganism.
- Less downstream processing; pure product is produced by isolated enzymes. Whole microorganisms give a variety of products in the final broth, making isolation of the desired product more difficult and more expensive.
Why are extracellular enzymes used in industrial processes rather than intracellular?
- They are secreted, making them easy to isolate and use.
- Each microorganism produces relatively few extracellular enzymes, making it easy to identify and isolate the required enzyme. In comparison, each microorganism produces hundreds of intracellular enzymes which would need extracting from the cell and separating.
- They tend to be much more robust than intracellular enzymes as the conditions outside the cell are less tightly controlled than conditions in the cytoplasm. So extracellular enzymes are adapted to cope with greater variations in temperature and pH than intracellular enzymes.
Give examples of where intracellular enzymes are used as isolated enzymes.
- Glucose oxidase for food preservation
- asparaginase for cancer treatment
- penicillin acylase for converting natural penicillin into semi-synthetic drugs which are more effective.
What are the advantages of using immobilised enzymes?
- They can be reused
- Easily separated from the reactants and products of the reaction they are catalysing so reduced downstream processing- which is cheaper.
- More reliable; there is a high degree of control over the process as the insoluble support provides a stable microenvironment for the immobilised enzymes.
- Greater temperature tolerance- immobilised enzymes are less easily denatured by heat and work at optimum levels over a much wider range of temps, making the bioreactor less expensive to run.
- Ease of manipulation; the catalytic properties of immobilised enzymes can be altered to fit a particular process more easily than those of free enzymes.
What are the disadvantages of using immobilised enzymes?
- Reduced efficiency- the process of immobilising an enzyme may reduce it’s activity rate.
- Higher initial costs of materials- immobilised enzymes are more expensive than free enzymes or microorganisms. However, the immobilised enzymes don’t need to be replaced frequently.
- Higher initial costs of bioreactor - the system needed to use immobilised enzymes is different from traditional fermenter so there is an initial investment cost.
- More technical issues - reactors which use immobilised enzymes are more complex than simple fermenters- they have more things which can go wrong.
Explain how enzymes can be immobilised by surface immobilisation and the advantages and disadvantages.
- Adsorption to inorganic carriers e.g. cellulose, silica, carbon nanotubes and polyacrylamide gel.
- Advantages; Simple and cheap to do, can be used with many different processes, enzymes very accessible to substrate and their activity is virtually unchanged.
- Disadvantages; enzymes can be lost from matrix relatively easily.
Explain how enzymes can be immobilised by different types of bonding, and the advantages and disadvantages.
- Surface immobilisation - Covalent or ionic bonding to inorganic carriers. Covalent bonding e.g. carriers with amino, hydroxyl and carboxyl groups.
- Advantages; cost varies, enzymes bound strongly and therefore unlikely to be lost, enzymes very accessible to substrate, pH and substrate conc. often have little effect on enzyme activity.
- Disadvantages; cost varies, active site of the enzyme may be modified in process, making it less effective.
Explain how entrapment in the matrix can be used to immobilise enzymes and the advantages and disadvantages.
- Enzymes are entrapped in the matrix e.g. polysaccharides
- Advantages; it is widely applicable to different processes.
- Disadvantages; may be expensive, can be difficult to entrap, diffusion of the substrate to and from the active site can be slow and hold up the reaction, effect of entrapment on enzyme activity is very variable depending on matrix.
Explain how membrane entrapment can be used to immobilise enzymes. Advantages and disadvantages.
- entrapment; membrane entrapment in microcapsules or behind a semi-permeable membrane, e.g. polymer based semi-permeable membrane,
- Disadvantages; relatively expensive, diffusion of the substance to and product from the active site can be slow and hold up the reaction.
How can immobilised enzymes be used in penicillin production?
- Immobilised penicillin acylase used to make semi-synthetic penicillins from naturally produced penicillins. Many types of bacteria have developed resistance to naturally occurring penicillins so they are no longer very effective drugs
- Fortunately, many bacterial are still vulnerable to the semi-synthetic penicillins produced by penicillin acylase so they are very important in treating infections caused by bacterial resistant to the original penicillin. Hundreds of tonnes of these medicines are made every year by immobilised penicillin acylase.
How are bulbs an example of natural cloning in plants?
The leaf bases swell with stored food from photosynthesis. Buds form internally which develop into new shoots, and new plants in the next growing season e.g. daffodils.
How are runners an example of natural cloning in plants?
e.g. strawberry plants. A lateral stem grows away from the parent plant and roots develop where the runner touches the ground. A new plant develops- the runner eventually withers away leaving the new individual independents.
How are rhizomes an example of natural cloning in plants?
- E.g. marram grass. A rhizome is a specialised horizontal stem running underground, often swollen with stored food. Buds develop and form new vertical shoots which become independent plants.
How are stem tubers an example of natural cloning in plants?
- e.g. potato.
- The tip of an underground stem becomes swollen with stored food to form a tuber or storage organ. Buds on the storage organ develop to produce new shoots.
Give 4 examples of vegetative propagation.
Bulbs
Runners
Rhizomes
Stem tubers
What are the advantages of propagating from cuttings?
- It is much faster- the time from planting to cropping is much reduced.
- It also guarantees the quality of the plants.
- By taking cuttings from good stock the offspring will be genetically identical and will therefore crop well.
When is micropropagation used to produce plants?
When the desirable plant;
- doesn’t readily produce seeds
- doesn’t respond well to natural cloning
- is very rare
- has been genetically modified or selectively bred with difficulty
- is required to be ‘pathogen free’ by growers e.g. bananas.
What are the basic principles of micropropagation?
- Take a small sample of tissue from the plant you want to clone- the meristem tissue from the shoot tips and axial buds is often dissected out in sterile conditions to avoid contamination by fungi and bacteria. This tissue is usually virus free.
- The sample is sterilised, usually by immersing it in sterilising agents such as bleach or ethanol. The material removed from the plant is called the explant.
- The explant is placed in a sterile culture medium containing a balance of plant hormones which stimulate mitosis. The cells proliferate, forming a mass of identical cells known as a callus.
- The callus is the divided up and individual cells or clumps from the callus are transferred to a new culture medium containing a different mixture of hormones and nutrients which stimulates the development of tiny, genetically identical plantlets.
- The plantlets are potted into compost where they grow into small plants
- The young plants are potted out to grow and produce a crop.
What are the advantages of micropropagation?
- Allows for the rapid production of large numbers of plats with known genetic make-up which will yield good crops.
- Culturing meristem tissue produces disease free plants
- It makes it possible to produce viable numbers of plants after genetic modification of plants.
- It provides a way of producing very large numbers of new plants which are seedless and therefore sterile to meet consumer tastes.
- It provides a way of growing plants which are naturally relatively infertile or difficult to grow from seed.
- It provides a way of reliably increasing the numbers of rare or endangered plants.
What are the disadvantages of micropropagation?
- It produces a monoculture- many plants which are genetically identical- they are all susceptible to the same diseases or changes in growing conditions.
- It is a relatively expensive process and requires skilled workers.
- The explants and plantlets are vulnerable to infection by moulds and other diseases during the production process.
- If the source material is infected with a virus, all of the clones will also be infected.
- In some cases, large numbers of new plants are lost during the process.
What is artificial twinning?
- The early embryo is split into two (or more) and two foetuses go on to develop from the two halves of the divided embryo.
- It is used by the farming community to produce the maximum offspring from particularly good dairy or beef cattle or sheep.
Explain the process of artificial twinning in cattle.
- A cow with desirable traits is treated with hormones so she super-ovulates, releasing more mature ova than normal.
- They may be fertilised naturally or by artificial insemination, by a bull with particularly good traits. The early embryos are flushed out of the uterus.
- Alternatively, the mature eggs are removed and fertilised in the lab.
- Usually before or around day six, when the cells are still totipotent, the cells of early embryo are split to produce several smaller embryos, each capable of growing on to form a healthy full-term calf.
- Each of the split embryos is grown in the lab for a few days to ensure all is well before it is implanted into a surrogate mother. Each embryo is implanted into a different mother as single pregnancies carry fewer risks than twin pregnancies.
- The embryos develop into foetuses and are born normally, so a number of identical cloned animals are produced by different mothers.
How is somatic cell nuclear transfer carried out?
- The nucleus is removed from a somatic cell of an adult animal.
- the nucleus is removed from a mature ovum harvested from a different female animal of the same species (it is enucleated).
- The nucleus from the adult somatic cell is placed into the enucleated ovum and is given a mild electric shock so it fuses and begins to divide. In some cases, the nucleus from the adult cell is not removed - it is simply placed next to the enucleated ovum and the two cells fuse (electrofusion) and begin to divide under the influence of the electric current.
- The embryo that develops is transferred into the uterus of a third animal where it develops to term.
- The new animal is a clone of the animal from which the original somatic cell is derived, although the mitochondrial DNA will come from the egg cell.
How is SCNT used?
- It is used in pharming- the production of animals that have been genetically engineered to produce therapeutic human proteins in their milk.
- It can be used to produce GM animals which grow organs that have the potential to be used in human implants.