3 DNA Structure And Replication Flashcards

(40 cards)

1
Q

What was Griffith’s experiment - give a summary of the steps and findings

A
  • He used Streptococcus pneumonia = two strains — rough and smooth and injected the two strains into different mice
  • rough strain= killed mice
  • smooth strain = mice lived
  • heat killed smooth strain = mice lived
  • rough strains and heat killed smooth strain = mice died
  • therefore, there suggested there was a transforming agent being transferred
  • we know now the transforming agent was DNA
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Which strain of S. pneumonia is virulent (in Griffiths experiment)

A

Smooth strain. ( it has a capsule around it which protects it from our immune system and is therefore virulent)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Which strain of S.pneumonia is nonvirulent

A

Rough strain

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

What was Avery’s experiment

A

He broke down smooth bacteria into different component and injected each with rough strain
- only DNA from smooth strain caused pneumonia

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What did Hershey and Chase find

A

Confirmed the role of DNA - concluded that it has genetic material

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Give a summary of Hershey and Chase’s experiment

A
  • had two batches of bacteriophage
  • one batch = sulphur radioactively only labels phage proteins
  • other batch = phosphorous only radioactively labels phage DNA
  • each batch infected different cultures of bacteria
  • cultures filtered, centrifuged
  • only phosphorous found in Pallat, sulphur in supernatant
  • therefore, DNA was injected into bacteria
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

What were Chargaffs findings

A

found ratio of A:T & C:G was same in each species – but variation between species

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

What were some of Watson and Cricks findings

A
  • DNA has a double helical structure

- each strand of DNA acts as a template for new strand

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

What is a nucleotide in DNA made of

A

Deoxyribose sugar
Base
Phosphate

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Which bond links the sugar to phosphate molecule

A

Phosphodiester bond

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What is the sugar phosphate backbone made of

A

Deoxyribose sugar and phosphate

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What is DNA coiled around

A

Histone

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Which genes are more loosely coiled - active or silent?

A

Active genes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

What is chromatin

A

DNA coiled around histone - efficiently packages DNA to take up less volume

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is Meselson and Stahl’s experiment

A
  • Grew E.coli in a medium containing heavy n15
  • Bacteria took this up and used to to make new DNA
  • this bacteria was added to a n14
  • 1st generation = Hybrid of light and heavy DNA
  • 2nd generation = some hybrid, some only consisted of n14
    — EVIDENCE for semi- conservative replication
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Which enzyme unwinds the two strands of the DNA

A

DNA helical

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

How does DNA helical separate the two strands

A

By breaking hydrogen bonds

18
Q

What do single strand binding proteins do

A

Stabilise the denatured DNA to prevent it from winding back up into a double helix

19
Q

Which enzyme synthesises a shirt RNA primer for the start of replication

20
Q

Give a summary of the steps in DNA replication in prokaryotes

A
  • initiates at origin of replication
  • DNA helical unzips the two strands
  • leading strand:
    —Primer binds to end
    — DNA polymerase binds and goes along adding new complementary bases in 5’ to 3’ direction
  • lagging strand:
    — Several RNA primers bind to different points of the strand
    — chunks of DNA are added = Okazaki fragments
  • exonuclease strips away the primers
  • DNA polymerase III fills in the gaps left when primers are removed
  • new strand is proofread
  • DNA lipase seals fragments
  • new DNA winds up into a double helix
21
Q

Role of exonuclease in DNA replication

A

Strips away the primers

22
Q

Why is DNA replication semi-conservative

A

Each new DNA molecule made consists of one new and one old chain strand

23
Q

What is the direction of growth of the leading strand

A

5’ to 3’ (read up write down)

Top strand is always 5’ at the beginning = leading strand

24
Q

Which enzyme is used to seal the gaps between the Okazaki fragments in DNA replication

25
Which strand grows continuously in DNA replication
Leading strand
26
Which strand grows in fragments in DNA replication
Lagging strand
27
How many dNTPs does DNA synthesis require
4
28
Which enzyme catalysed the formation of phosphodiester bonds
DNA polymerase
29
What is the phosphodiester bond formed between
3’ OH of nucleotide on the primer strand and the phosphate of the incoming dNTP
30
What does the formation of bonds in DNA synthesis release
Disphosphate
31
What is the frequency of errors during replication usually
1 in 10^5
32
What is the frequency of errors after DNA polymerase carries out 3 to 5’ editing function
Reduced to 1 in 10^7
33
What is the error frequency when other enzymes check for mismatched bases after replication
1 in 10^9 | 579
34
What can mutations be a cause of
- spontaneously (replication errors) | - induced by dna damage (eg mutagens)= endo/ exogenous
35
What are the four types of gene mutations
Base substitution Deletion bases Insertion bases Rearrangement bases
36
Base excision repair proteins function
Cut it damaged bases = different proteins used for different types of damage
37
Nucleotide excision repair proteins function
Less specific and cut our larger sections of DNA to remove damage before replication occurs
38
What does deamination of cytosine create
Uracil
39
What can happen if cytosine is deaminated into uracil and this is not repaired
Mutation
40
Which enzyme recognises uracil in DNA and cuts it out
Enzyme Uracil N-glycosylase