Chemistry Basics Flashcards

1
Q

G (Gibbs Free Energy)

A
  • Energy available to do work
  • ∆G = Gproducts – Greactants
  • ∆G = free energy change for reaction (c-a)
  • ∆G‡ = activation energy (b-a)
  • ∆G = ∆H - T∆S
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2
Q

Enthalpy

A

Heat, H

∆G = ∆H - T∆S

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3
Q

Entropy

A

Disorder, S

∆G = ∆H - T∆S

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4
Q

Exergonic

A
  • ∆G
    Energy Released
    Favour spontaneous
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5
Q

Endergonic

A

+ ∆G
Energy Absorbed
Doesn’t favour spontaneous

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6
Q

Exothermic

A
  • ∆H

Heat released

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7
Q

Endothermic

A

+ ∆H

Heat absorbed

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8
Q

Thermodynamic Equilibrium (Keq)

A

aA + bB ↔ cC +dD

K_eq=(〖[C]〗_eq^c 〖[D]〗_eq^d)/(〖[A]〗_eq^a 〖[B]〗_eq^b )

Keq= equilibrium constant, position of reaction at equilibrium

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9
Q

Relationship between ∆G and ∆G° and equilibrium?

A

∆G= ∆G° + RT ln (〖[C]〗_eq^c 〖[D]〗_eq^d)/(〖[A]〗_eq^a 〖[B]〗_eq^b )

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10
Q

How do standard conditions differ between chemistry and biochemistry conditions?

A

∆G° = standard free energy change
• 298 K, 1atm, 1M conc [H+] = 1M : pH = 0
∆G’° = biochemistry standard free energy change
• pH now 7
• [H+] = 10-7

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11
Q

What does ∆G = 0 mean? How can ∆G = 0 be used to find the value of ∆G’°?

A

∆G = 0 at equilibrium (no more work)

∆G= ∆G° + RT ln (〖[C]〗_eq^c 〖[D]〗_eq^d)/(〖[A]〗_eq^a 〖[B]〗_eq^b )

0= ∆G° + RT ln (〖[C]〗_eq^c 〖[D]〗_eq^d)/(〖[A]〗_eq^a 〖[B]〗_eq^b )

∆G°=- RT ln Keq

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12
Q

How can unfavourable reactions be manipulated in order to go ahead?

A
  1. Remove one or more products at a rate faster than it’s produced
    >Becomes kinetically driven
    >In glycolysis, the next step consumes the previous steps product
  2. Replenish one or more of the reactants at a rate faster than it is removed
    >Becomes kinetically driven
    >Feed reaction
  3. Couple first unfavourable reaction to a second favourable reaction
    >Utilise readily available common intermediate
    Glucose + pi → Glucose 6-p + H2O
    ATP + H2O → ADP + pi
    Glucose + pi + ATP + H2O → Glucose 6-p + H2O + ADP + pi
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13
Q

What is needed for reactions to be favourable to go ahead?

A

∆G determines if reaction will happen spontaneously (NOT ∆G°’)

Alter initial conditions to make ∆G negative (even if ∆G’° positive)

Need to keep [products] < [reactants] so (〖[C]〗_eq^c 〖[D]〗_eq^d)/(〖[A]〗_eq^a 〖[B]〗_eq^b )<1
Smaller/bigger

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14
Q

Equation for pH

A

pH = - log[H+]

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15
Q

Acids

A

Proton donors:

AH –> A- + H+
A- is the conjugate base form of AH

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16
Q

Bases

A

Proton acceptors:

A- + H+ –> AH
AH is the conjugate acid form of A-

17
Q

What does it mean when pH = pKa?

A

A group is 50% protonated when pH is equal to pKa

pKa = - log Ka

18
Q

Nucleophile

A

A group with a tendency to form a covalent bonds with an electron-poor group

nucleophile = “nucleus loving”

Nucleophiles contain an atom with high electron density (δ-).

19
Q

Electrophile

A

A group with a tendency to receive electrons from an electron-rich group

electrophile = “electron loving”

Electrophiles contain an atom with low electron density (δ+).

20
Q

What are the types of non-covalent interactions?

A

Ionic interactions:
>Electrostatic attraction between charged groups

Ion-dipole interactions:
>Electrostatic attraction between a charged group and a neutral permanent dipole.
>Responsible for solvation of ions in water.

Dipole-dipole interactions:
>Attraction between neutral permanent dipoles
>Hydrogen bonding.

Van der Waal’s interactions (dispersion forces):
>Attraction between temporary dipoles
>Important when considering interactions between groups or molecules, which are predominantly non-polar

21
Q

Aldehyde Vs. Ketone?

A

An Aldehyde is a C joined to an R, an O and a H
R-C(OH)

A Ketone is a C joined to two R’s and an O
R-C(OH)-R

22
Q

In oxidation reactions, what does 2H mean?

A

2H is chemistry shorthand for 2e- plus 2H+

These reactions involve transfer of electrons