Chapter 20 Flashcards

1
Q

What is recombinant DNA?

A

It refers to the joining of DNA molecules.

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2
Q

What is order of recombinant DNA?

A

cutting DNA with restriction enzymes

ligate into a vector

transfer into a host cell

let the host replicate the DNA

and recovering the DNA from the host cell.

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3
Q

What does a restriction enzyme do?

A

It cuts DNA at specific sequences.

It binds to DNA at a specific sequence and breaks the phosphodiester bonds.

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4
Q

Restriction enzymes cleaves these sequences can creates what kind of ends.

A

Cohesive Ends or Blunt Ends.

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5
Q

What does DNA ligase do?

A

It joins restriction fragments covalently to produce intact DNA molecules.

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6
Q

What are vectors?

A

DNA molecules that can replicate cloned DNA fragments in a host cell.

They also have several restriction enzymes that allow insertion of DNA along with a selectable marker such as antibiotic resistance.

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7
Q

What is a plasmid?

A

An extrachromosal double stranded DNA molecule that replicates autonmously in bacterial cells.

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8
Q

For DNA cloning, plasmids have been engineered to contain two things.

A

A number of convenient restriction sites and a marker gene to select for its presence in the host cell.

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9
Q

What carries 20kb, 50kb, and 300 kb of inserted DNA?

A

Baceriophage- 20
Cosmid- 50
BAC- 300

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10
Q

What are expression vectors?

A

They engineered to express a gene of interest to produce large quantities of the encoded protein.

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11
Q

What are libraries?

A

They are collections of cloned sequences that contain at least one copy of the entire DNA genome.

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12
Q

What is a cDNA library?

A

It contains complementary DNA copies of the mRNA in a cell.

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13
Q

How is cDNA prepared?

A

isolating mRNA from cells

synthesizing the complementary DNA using reverse transcriptase

and cloning the cDNA molecules into a vector

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14
Q

How do you isolate specific clones from a library?

A

By using a probe

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15
Q

What is a probe?

A

they are used to screen a library to recover clones of a specific gene

It is any DNA or RNA sequence that is complementary to the target gene of sequence to be identify.

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16
Q

Explain the process of screening.

A

Clones from the library are grown to produce colonies.

Colonies are transferred to a filter

The probe is added in with the filter

The colony the probe identified on the filter is recovered from the plate.

17
Q

What is an advantage of PCR?

A

Requires small amounts of DNA

Specificity is controlled by the primer sequence

DNA can be ontained in sufficient quantities for direct manipulation

PCR can be used to engineer specific changes

18
Q

What is a disadvantage of PCR?

A

susceptible to contamination

Information about the sequence must be known

19
Q

What is reverse transcription PCR? (RT-PCR)

A

It is used to study gene expression by studying mRNA production by cells or tissues.

20
Q

What is quantitative real-time PCR? (QPCR)?

A

It allows researchers to quantify amplifications reactions as they occur in real time.

21
Q

What is a restriction map?

A

It establishes the number and order of restriction sties and the distance between restriction sites on a cloned DNA segment.

22
Q

What are southern blots used for?

A

They allow identification of one DNA fragment in a complete genome.

It is found by using a probe, typically a radioactive one.

23
Q

Southern blotting has two steps.

A

separation of DNA fragments by size

identification of the fragment of interest by hybridization

The DNA is separated via electrophoresis during blotting.

24
Q

What are northern blots used for?

A

to determine whether a gene is actively being expressed in a given cell or tissue

25
Q

What is different about northern than southern?

A

Northern uses RNA on the cell, seperated by size

26
Q

What happens at 95 degrees Celsius?

A

Denature of DNA

27
Q

What happens at 52-79 degrees Celsius?

A

Annealing of Primers

28
Q

What happens at 72 degrees Celsius?

A

Extension

29
Q

What materials are needed to run PCR?

A

Taq Polymerase
Primers
dNTPs
Template DNA

30
Q

Name three important freatures of general plasmid vectors.

A

origin of replication

insertable

many restriction enzyme sites

selectable markers

31
Q

What process is ddATP used in?

A

Sanger sequencing