Basic Concepts of Metabolism. Flashcards

1
Q

In which cells does metabolism take place?

A

In almost every cell.

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2
Q

Why do cells take part in metabolism?

A

It is the way that cells gain energy to build organelles and perform various functions.

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3
Q

What are the 2 steps that need to occur in metabolism?

A

The extraction of energy from food.

Using nutritional energy to build various organelles and for other bodily tasks such as movement.

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4
Q

What are the steps that occur in metabolism called?

A

Catabolism.

Anabolism.

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5
Q

What is catabolism?

A

Catabolism produces energy by taking the nutrients from carbs, lipids and proteins and breaking them down into their smallest components.

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6
Q

What is anabolism?

A

Anabolism uses the energy produced by catabolism to make proteins and other organic structures.

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7
Q

In what form is the energy produced by catabolism?

A

ATP.

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8
Q

Is catabolism an oxidative or reductive process?

A

Oxidative.

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9
Q

What are the high energy molecules that are obtained by catabolism?

A

ATP.

NADH.

NADPH.

FADH2.

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10
Q

How can you tell that ATP, NADH, NADPH and FADH2 are high energy molecules?

A

Because they all have a lot of hydrogens.

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11
Q

How many stages are there in catabolism?

A

3.

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12
Q

What is the 1st stage of catabolism?

A

The digestion of nutrients which are broken down into their pre-cursor molecules.

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13
Q

What nutrients are broken down via catabolism?

A

Proteins.

Fats.

Carbohydrates.

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14
Q

What are the pre-cursor molecules for proteins?

A

Amino acids.

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15
Q

What are the pre-cursor molecules for carbohydrates?

A

Carbohydrates are polysaccharides so their pre-cursor molecules are monosaccharides.

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16
Q

What are the pre-cursor molecules for fats?

A

Glycerol and fatty acids.

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17
Q

Why are nutrients from the diet broken into their component parts?

A

Because only the component parts are absorbed through the small intestine into the bloodstream.

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18
Q

Is stage 1 of catabolism extracellular or intracellular?

A

Extracellular as it occurs in the digestive system.

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19
Q

What happens when the component parts of nutrients are absorbed?

A

The component parts are absorbed by the intestinal mucosal cells into the bloodstream where they are transported to various cells.

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20
Q

Is the 2nd stage of catabolism extracellular or intracellular?

A

Intracellular.

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21
Q

What occurs during the 2nd stage of catabolism.

A

Each individual component is broken down to form a common intermediate.

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22
Q

What is the common intermediate formed in the 2nd stage of catabolism?

A

Acetyl-CoA which is a 2 carbon molecule.

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23
Q

Does catabolism occur in a specific organelle within the cell?

A

No.

Each class of organic molecule is broken down via a different pathway and in a different organelle.

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24
Q

Is acetyl CoA formed by the components of fats, carbs and proteins?

A

Yes.

Acetyl-CoA is formed by multiple dietary components which have different pathways.

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25
Q

What organelle is responsible for the formation of acetyl CoA?

A

Acetyl CoA is always formed in the mitochondria. It is always the final step of the pathway for each component.

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26
Q

Where does stage 3 of catabolism occur?

A

In the mitochondria.

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27
Q

What is the 3rd step of catabolism?

A

The further oxidation of acetyl-CoA to a usable form of energy (ATP) and a waste product (CO2).

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28
Q

What is always the final stage of step 2 of catabolism?

A

The formation of AcoA in the mitochondria.

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29
Q

Do the first 2 steps of catabolism create any high energy products?

A

Yes.

They create many high energy products such as NADH, NADPH and FADH2 which are also converted to ATP.

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30
Q

What is anabolism?

A

The process by which the body uses precursors and turns them into cellular macromolecules.

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31
Q

How does the body obtain the precursors that are used in anabolic processes to create cellular macromolecules.

A

From the diet.

They can be synthesised by the body.

They can be recycled by the body.

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32
Q

Name some cellular macromolecules that are formed by anabolism?

A

Proteins.

Nucleic acids.

Polysaccharides.

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33
Q

Does anabolism require energy?

A

Yes.

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34
Q

Does catabolism require energy?

A

No.

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35
Q

How does anabolism get the energy required to build macromolecules?

A

From the high energy molecules that are produced via catabolism.

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36
Q

What are the products from catabolism reduced to after anabolism?

A

ADP.

NAD+.

NADP+.

FAD.

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37
Q

Does metabolism occur in 1 organ or in many organs?

A

In many organs.

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38
Q

Why must metabolism be regulated?

A

Because, it occurs in many organs and they need to synchronise work load.

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39
Q

How is metabolism in different organs controlled?

A

There is a communication system that organs use to tell other organs how hard to work.

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40
Q

What are the 2 types of signal that cells can use to communicate with each other during metabolism?

A

Intracellular signal.

Intercellular signal.

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41
Q

What is an intercellular signal?

A

Signals between different cells.

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42
Q

Give an example of an intercellular signal?

A

When glucose levels rise in the body, the pancreas secretes insulin into the bloodstream.

Insulin is sent to the liver cells and will be received by a specific receptor on the cell membrane.

The receptor will then cause an intracellular response within the individual liver cells.

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43
Q

What is a primary messenger?

A

It is an intercellular signal that will attach to a receptor on the cell membrane.

This will cause the release of an intracellular messenger.

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44
Q

What is a secondary messenger?

A

When a primary messenger binds to the membrane receptor, the receptor will release an intracellular messenger or 2nd messenger to go to the nucleus.

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45
Q

Can any primary messenger bind to any cell membrane receptor?

A

No.

Each type of stimulus that is released by a cell will have a unique receptor to which it binds on the target cell.

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46
Q

What is an intracellular signal usually a response to?

A

An intercellular signal.

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47
Q

What will an intracellular signal do?

A

It will travel into the interior of the cell and will tell the various organelles what to do.

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48
Q

What is signal transduction?

A

The process of converting an intercellular signal into a intracellular signal.

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49
Q

What are the 3 types of intercellular signal?

A

Synaptic signalling.

Endocrine signalling.

Direct contact signalling.

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50
Q

What is synaptic signalling?

A

When a synaptic cell will produce neurotransmitters aimed at a specific target cell.

The neurotransmitter will find a specific receptor on the target cell which elicits the production of a second messenger and a change inside the cell.

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51
Q

What kind of cells are common synaptic cells?

A

Nerve cells.

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52
Q

What kind of molecules are used for endocrine signals?

A

Hormones.

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53
Q

How does endocrine signalling work?

A

A hormone is released by a cell and will travel through the bloodstream to a specific receptor on a target cell.

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54
Q

What is direct contact signalling?

A

Where 2 adjacent cells can communicate via contact between gap junctions or cell surface receptors.

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55
Q

What do cells need to signal via direct contact?

A

Both cells must have compatible receptors or junctions on their cell membranes.

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56
Q

What are the 4 types of intercellular signal receptors?

A

Gated ion channels.

Receptor enzyme (catalytic receptor).

G protein coupled receptors (GCPRS).

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57
Q

What is an intracellular receptor that can receive intercellular signals?

A

Steroid receptors.

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58
Q

Where is a steroid receptor located?

A

In the nucleus.

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59
Q

How will a steroid enter the nucleus?

A

It will cross the cytoplasmic membrane.

Once in the cytoplasm it will bind to a specific receptor and form a complex.

The complex will then cross the nuclear membrane and enter the nucleus.

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60
Q

What happens to the steroid receptor complex once they enter the nucleus?

A

Once in the nucleus, it will bind to an enhancer region of DNA.

This activates a specific gene in the promoter region.

The activated gene will produce mRNA that will lead to a gene product such as a protein.

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61
Q

Do all the messengers that travel to steroid receptors bind to receptors in the cytoplasm?

A

No

Some will cross directly into the nucleus and bind to a receptor there.

Some may bind directly to DNA.

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62
Q

What molecule tends to be the primary messenger that are received by steroid receptors?

A

Hormones.

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63
Q

Why must hormones be lipophilic?

A

Because they must cross the cytoplasmic membrane.

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64
Q

How do gated ion channels work?

A

They are channels within the cell membrane that will open or close in response to an intercellular signal.

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65
Q

How will an intercellular signal change a gated ion channel?

A

The conformation will change as it is either opening or closing the channel.

66
Q

What is a receptor enzyme also known as?

A

A catalytic receptor.

67
Q

How does a catalytic receptor work?

A

The binding of the signal induces intracellular changes within the enzyme.

68
Q

Describe the location of a catalytic receptor?

A

The receptor for this enzyme is on the extracellular side of the membrane.

The enzyme is on the cytoplasmic side of the membrane.

69
Q

Where are GCPR receptors located?

A

In the cell membrane.

70
Q

How do cell membrane receptors work?

A

An extracellular signal binds to a GCPR.

This causes the receptor to bind to a G protein.

This will activate an enzyme within the G protein that will produce a second messenger to elicit an intracellular response.

71
Q

Where is the G-protein located when the GCPR binds to it?

A

In the cytoplasm.

72
Q

What type of receptor is the only one that isn’t located in the cell membrane?

A

Steroid receptors.

73
Q

What kind of binding domains do membrane bound receptors have?

A

Extracellular binding domains.

74
Q

Which type of signal and receptor will usually cause an up-regulation in gene expression?

A

Steroid hormones and steroid receptors.

75
Q

What kind of cells often use gated ion channels?

A

Neurotransmitters.

76
Q

How many subunits make up a receptor enzyme?

A

4.

77
Q

What are the 4 subunits of a receptor enzyme?

A

2 alpha.

2 beta.

78
Q

What subunits make up the receptor part of a receptor enzyme?

A

The 2 alpha subunits.

79
Q

What subunits make up the enzymatic part of a receptor enzyme?

A

The 2 beta subunits.

80
Q

The enzyme of a receptor enzyme is what class of enzyme?

A

A kinase.

It will phosphorylate amino acids.

81
Q

How does a receptor enzyme for a 2nd messenger?

A

It will phosphorylate a tyrosine residue which will then travel to other intracellular proteins and transfer the phosphate group.

82
Q

What is a common signal used by gated ion channels?

A

Acetyl-choline.

83
Q

What is a common signal used by receptor enzymes?

A

Insulin.

84
Q

Which type of receptor is made up of 7 transmembrane helices?

A

A GPCR.

85
Q

Why are G proteins called G proteins?

A

Because they interact with GDP and GTP.

86
Q

How does a GCPR produce its 2nd messenger?

A

Once the G protein is activated, it will produce a small, organic molecule which is the 2nd messenger.

87
Q

How many types of 2nd messenger can be produced by a GPCR?

A

2.

88
Q

What are the 2 methods of production of 2nd messengers that are produced by GPCRs?

A

Adenylate cyclase system.

Calcium/phosphatylinositol system.

89
Q

What is the 2nd messenger that is produced by the adenylate cyclase system?

A

Cyclic AMP (cAMP).

90
Q

What is the 2nd messenger that is produced by the calcium/phosphatylinositol system?

A

IP3, DAG, Ca2+.

91
Q

Define a 2nd messenger?

A

A small, organic molecule that is produced in the cytoplasm in response to the activation of a cell surface receptor.

92
Q

What will a 2nd messenger do once it is formed?

A

It will cause a cascade of intracellular events resulting in a cellular response.

93
Q

Are 2nd messenger proteins?

A

No.

94
Q

Will a GPCR only produce 1 second messenger?

A

No, they will produce many.

95
Q

Is the 2nd messenger present in the cell when the primary messenger binds to the receptor?

A

No.

It is formed after the primary messenger has bound to the receptor.

96
Q

What kind of receptor is involved in the adenylate cyclase system?

A

A GPCR.

97
Q

What stimuli can start the adenylate cyclase system?

A

Epinephrine/norepinephrine or glucagon.

98
Q

Will epinephrine/norepinephrine or glucagon bind to the same GPCR?

A

No.

Glucagon and epinephrine will bind to different GPCRs, but both will start the same pathway.

99
Q

What is the 2nd messenger in the adenylate cyclase system?

A

cAMP. Cyclic AMP.

100
Q

How is the adenylate cyclase system triggered?

A

Epinephrine or glucagon will bind to their receptor.

This will activate the GPCR.

101
Q

What receptor will glucagon bind to to activate the adenylate cyclase system?

A

The glucagon receptor.

102
Q

What receptor will epinephrine/norepinephrine bind to to activate the adenylate cyclase system?

A

The beta adrenergic receptor.

103
Q

Where will the glucagon/epinephrine receptor for the adenylate cyclase system be located?

A

On the extracellular side of the cell membrane.

104
Q

What happens once the beta adrenergic or glucagon receptor has been activated?

A

The GPCR will relay the message from the signal to the G protein.

The signal will cause the alpha subunit of the G protein to replace GDP with GTP.

105
Q

Where is the G protein that is interacts with a GPCR located?

A

In the cytoplasm.

106
Q

What are the 3 subunits that make up a G protein?

A

Alpha.

Beta.

Gamma.

107
Q

Is the alpha subunit of the G protein bound to anything?

A

Yes, it is bound to GDP.

108
Q

What is the alpha subunit called once it is bound to GTP?

A

The GS alpha subunit.

109
Q

What happens to the alpha subunit once it has replaced GDP with GTP?

A

The GS-alpha subunit will then dissociate from the beta and gamma subunits.

It will then move towards and bind to the target enzyme.

110
Q

What is the target enzyme for the GS alpha subunit?

A

Adenylate cyclase

111
Q

What is the activated form of the alpha subunit in the adenylate cyclase system?

A

The GS alpha subunit.

112
Q

How is adenylate cyclase activated?

A

It is activated when the GS alpha subunit binds to it.

113
Q

What happens once adenylate cyclase is activated?

A

It will use ATP to catalyse the formation of cAMP.

114
Q

What is cAMP?

A

It is the second messenger in the adenylate cyclase system.

115
Q

What will cAMP do once it has been formed?

A

It will travel through the cytoplasm to activate protein kinase A (PKA).

116
Q

What will protein kinase A do once it has been activated?

A

PKA is an enzyme that will phosphorylate many different enzymes within the cell.

117
Q

What causes the cellular response to the adenylate cyclase system?

A

When PKA phosphorylates enzymes, it will lead to a cellular response.

118
Q

How is the adenylate cyclase system stopped?

A

Phosphodiesterase will hydrolyse cAMP to 5-AMP and PKA will be deactivated.

119
Q

What is the stimulus for the beta adrenergic receptor?

A

Norepinephrine or epinephrine.

120
Q

What is the G protein for the beta adrenergic receptor?

A

GS alpha.

121
Q

What is the effector enzyme for the beta adrenergic system?

A

Adenylate cyclase.

122
Q

What is the target of the second messenger for the beta adrenergic system?

A

Protein kinase A.

123
Q

How will glucagon and epinephrine lead to differences in the beta adrenergic system?

A

Glucagon will bind to the glucagon receptor but will activate exactly the same system.

124
Q

What kind of cell receptors have extracellular binding domains?

A

GPCRs.

Gated ion channels.

Enzyme linked receptors.

125
Q

What is the only type of receptor that has its messenger enter the cell?

A

Steroid receptors.

126
Q

Is the alpha-1 adrenergic receptor similar to the beta adrenergic receptor?

A

No. They are different.

The only similarity is that they are both GPCRs.

127
Q

What will activate the alpha-1 adrenergic receptor?

A

Norepinephrine or epinephrine.

128
Q

Does the alpha-1 adrenergic receptor use the same G protein as the beta adrenergic receptor?

A

No.

It uses the alpha subunit of the G protein but it is called the GQ alpha subunit.

129
Q

Does the GQ alpha subunit activate the same second messenger as the GS alpha subunit?

A

It activates a different target enzyme and produces a different 2nd messenger.

130
Q

What is the pathway that is triggered by the alpha-1 adrenergic receptor called?

A

Phosphoinositide system.

131
Q

Why is the pathway that is activated by the alpha-1 adrenergic receptor called the phosphoinositide system?

A

Because the process will cleave phosphoinositol 4,5-bisphosphate to form IP3 and DAG.

132
Q

What can phosphoinositol 4,5-bisphosphate be abbreviated to?

A

PIP-2.

133
Q

What will cleave PIP-2?

A

Phospholipase C.

134
Q

What are the 2nd messengers that are produced by the phosphoinositide system called?

A

IP3.

Calcium ions.

DAG.

135
Q

What is the substrate for phospholipase C?

A

PIP-2.

136
Q

What is step 1 of the phosphoinositide system?

A

The binding of epinephrine or norepinephrine to the alpha-1 adrenergic receptor.

137
Q

What happens once epinephrine has bound to the the alpha-1 adrenergic receptor?

A

It causes the alpha subunit of the G protein to swap its GDP for GTP.

138
Q

What happens once the alpha subunit of the G protein has bound to GTP in the phosphoinositide system?

A

It will dissociate from the rest of the G protein.

139
Q

What is the activated form of the alpha subunit called in the phosphoinositide system?

A

The GQ alpha subunit.

140
Q

What happens once the GQ alpha subunit has dissociated from the G protein?

A

It will travel to its target enzyme.

141
Q

What is the target enzyme of the GQ alpha subunit?

A

Phospholipase C.

142
Q

How is phospholipase C activated?

A

By the binding of the GQ alpha subunit.

143
Q

What happens once phospholipase C is activated?

A

It will travel down the cell membrane until it finds PIP-2.

144
Q

What happens once phospholipase C finds PIP-2?

A

It will cleave PIP-2 to form 2 second messengers.

145
Q

What are the 2 second messengers that arise as a result of the cleaving of PIP-2?

A

DAG.

IP3.

146
Q

Is DAG or IP3 a water soluble molecule?

A

IP3 is water soluble.

147
Q

Why does IP3 need to be water soluble?

A

So it can travel into the cytoplasm.

148
Q

Where is PIP-3 located?

A

In the cell membrane.

149
Q

Will DAG travel into the cytoplasm once it has been formed?

A

No.

It will stay in the membrane.

150
Q

What increases the amount of IP-3 in the cell?

A

The cleavage of PIP-2.

151
Q

What will IP-3 do once it has been cleaved from PIP-2?

A

It will travel through the cytoplasm and bind to the endoplasmic reticulum which causes a release of calcium ions.

152
Q

Are the calcium ions that are released from the ER by IP-3 considered a 2nd messenger?

A

The calcium ions are an additional 2nd messenger as they were not present in the cytoplasm when this pathway started.

153
Q

What happens once the calcium ions have been released from the ER?

A

They and DAG will bind to a membrane bound enzyme

called protein kinase C.

154
Q

What happens once phospholipase C has been activated?

A

It will phosphorylate specific enzymes and this will lead to a cellular response.

155
Q

What is the stimulus for the alpha-1 adrenergic receptor?

A

Epinephrine/norepinephrine.

156
Q

What is the G protein for the alpha-1 adrenergic receptor?

A

The GQ alpha subunit.

157
Q

What is the effector enzyme in the phosphoinositide system?

A

Phospholipase C.

158
Q

What is the target of the effector enzyme in the phosphoinositide system?

A

PIP-2.

159
Q

What are the 2nd messengers in the phosphoinositide system?

A

Calcium ions, DAG and IP-3.

160
Q

What is the target of the 2nd messengers in the phosphoinositide system?

A

Protein kinase C.