DNA structural and functional Flashcards

1
Q

A phosphodiester bond joins

A

two nuleotides forming a dinucleotide

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2
Q

sequences are always written in which direction?

A

5’ -3’

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3
Q

The major groove always has - proteins

A

4 - H bond acceptor, H bond donor, H atoms, Methyl group

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4
Q

the minor groove always has - proteins

A

3

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5
Q

the twist angle/rotation per residue is

A

28 - 42

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6
Q

how many base pairs are there during one 360 turn

A

10.5

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7
Q

Properties of B DNA (diameter, A/bp, bp/turn)

A
  1. 5 A
  2. 4 A/bp
  3. 4 bp/turn
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8
Q

Properties of A DNA (diameter, A/bp, bp/turn)

A

25.5 A
2.3 A/bp
11 bp/turn
bases are tilted to 19’

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9
Q

anthrax is due to which bacteria

A

bacillus antracis

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10
Q

what produces neurotoxin botulinum

A

clostridium botulinum: the botulinum toxin causes severe flaccid paralytic disease. Are destroyed at 100’. Produces heat resistant spores

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11
Q

Botulinum toxin is also used for?

A

paralytic effects of human voluntary musculature.

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12
Q

Z and B DNA are both which sided?

A

left handed

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13
Q

what is the repetitive unit in Z-DNA

A

a dinucleotide

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14
Q

is Z DNA more stable than B DNA

A

no, due to the electrostatic repulsion between the negatively charged phosphates on opposite strands which are nearer in this conformation

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15
Q

what is the function of Z-DNA

A

it can relax DNA supercoils that are produced when the 2 strands are separated thus facilitating gene expression

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16
Q

what are the stabilizing forces

A

hydrophobic interactions
stacking interactions
hydrogen bonding

17
Q

what are the destabilizing interactions

A

electrostatic repulsions

18
Q

dipole

A

molecules or atoms with equal and opposite electrical charges separated by a small distance

19
Q

order of strength of bonds

A

VDW

20
Q

the donor atom in an H bond is

A

the F, N, O

21
Q

specificities of H bonds

A

they are directional and are specific , they are strongest when 3 atoms are in a line

22
Q

denaturation can occur by

A

heat, strong bases/acids, organic solvents, inorganic salt

23
Q

spectrophotometer

A

device that measures the absorbance of a solution as light of a specified wavelength is passed through it

24
Q

the hyperchromic shift occurs during

A

heating

25
Q

the hypochromic shift occurs during

A

cooling