A1CC1 Chapter 4 - Enzymes and Biological Reactions Flashcards

(45 cards)

1
Q

What is metabolism?

A

A series of enzyme controlled reactions in the body.

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2
Q

What are the two types of reaction?

A

Anabolic and Catabolic

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3
Q

What is anabolic reaction?

A

Protein synthesis where amino acids are built up into more complex polypeptides.

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4
Q

What is catabolic reaction?

A

Digestion of proteins, where complex polypeptides are broken down into simple amino acids.

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5
Q

What are the key facts about enzymes?

A
  • Proteins speeding up chemical reactions by lowering the activation energy.
  • Can be reused over and over.
  • Convert substrates to products.
  • Biological catalysts.
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6
Q

What is the structure of an enzyme?

A

Complex folded polypeptide chains held together in a 3D shape.

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7
Q

In terms of structure of enzymes, what is a primary structure?

A

Formed from the simple order of amino acids.

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8
Q

How does this then form an enzyme?

A

Each amino acids is joined to the next to form peptide bonds. Where this structure is then folded into an a-helix or b pleated sheet held together by hydrogen bonds called the secondary structure.

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9
Q

What is the Tertiary Structure of an enzyme?

A

Where further folding of the secondary structure occurs to form a 3D shape which is held together by hydrogen, ionic and disulphide bonds.

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10
Q

What is important about the tertiary structure of an enzyme?

A

This is what creates the shape of the ‘active site’ where substrates can bind.

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11
Q

Why do enzymes act in an aqueous environment?

A

They are soluble and catalyse many reactions including hydrolysis.

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12
Q

What is an enzyme-substrate complex?

A

An intermediate structure formed during an enzyme-catalysed reaction in which substrate and enzyme bind temporarily, such that the substrates are close enough to react.

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13
Q

What is activation energy?

A

The minimum amount of energy required to be put into a chemical system for a reaction to occur.

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14
Q

How can enzymes act?

A

They can act intracellularly or extracellularly.

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15
Q

Give an example of where an enzyme acts intracellularly?

A

During protein synthesis where the formation of a peptide bond between two amino acids is catalysed.

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16
Q

Give an example of where an enzyme acts extracellularly?

A

When pancreatic amylase is released from pancreatic cells and travels to the small intestine via the pancreatic duct where it then catalyses the breakdown of starch to maltose.

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17
Q

What are the two models of enzyme action?

A
  • Lock and Key Model
  • Induced Fit Model
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18
Q

What does the Lock and Key Model state?

A

The substrate has a complementary shape to the enzyme’s active site, like a key fitting into a lock. This explains the specificity of many enzymes that many only catalyse one substrate.

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19
Q

What does the Induced Fit Model state?

A

The enzyme’s active site becomes altered by the binding substrate molecule to accomodate it. This breaks bonds meaning the activation energy decreases. This explains why multiple substrates can bind to one active site.

20
Q

What factors affect the rate of enzyme action? (5)

A
  1. Substrate concentration
  2. Temperature
  3. pH
  4. Enzyme concentration
  5. Presence of inhibitors
21
Q

How does substrate concentration affect the rate of enzyme action?

A

When the substrate concentration increases, there is a greater chance of a successful collision between the substrate and the enzyme resulting in more enzyme-substrate complexes forming, increasing the rate of reaction.

22
Q

What happens when all active sites are in use?

A

Reached plateau which represents the maximum rate of reaction for the rest of the conditions.

23
Q

How does temperature affect the rate of enzyme reaction?

A

When temperature increases, both enzymes and substrates gain more kinetic energy, so move faster. This increases the chance of a successful collision between them. As temp increases, it reaches the optimum rate.

24
Q

Why does rate drop of suddenly if temperature is too high?

A

The rate decreases rapidly due to hydrogen bonds in the tertiary structure breaking due to increased vibration. This results in a change of shape of the active site meaning the enzyme is now denatured and non-functional.

25
How does pH affect the rate of enzyme reaction?
When pH of an enzyme increases or decreases either side of the optiumum, the rate of reaction decreases.
26
Why does the rate decrease either side for pH?
The charges on the amino acid side chains (R groups) that make up the enzyme's active site are influenced by H+ and OH- ions. Hence, if too many of either are present then the substrate can be repelled from the active site preventing binding. This can cause denaturation if extreme.
27
What is the definition of denaturation?
The permanent change to the shape of an active site, preventing a substrate from binding.
28
What is a buffer?
A chemical resisting changes in pH. Where it neutralises excess acid or alkali.
29
How can we use buffers in an enzyme experiment?
They can be used to maintain the optimum pH for a given reaction.
30
Give an example of a buffer system in the body.
The pH of the blood is around 7.4 by using two chemicals; Carbonic Acid and Bicarbonate.
31
What does the graph of 'product formation' look like?
This shows the total product made, where once a plateau is reached it means the reaction has ended since no more product is being made.
32
What are enzyme inhibitors?
Inhibitors prevent enzyme-substrate complexes from forming.
33
What are the two types of Enzyme Inhibition?
Competitive Inhibition and Non-Competitive Inhibition.
34
What is competitive inhibition?
Where a molecule has a similar shape to the substrate so it has a complementary shape to the active site. The first molecule to bind to the active site will form the ESC.
35
How can we overcome competitive inhibition?
Increasing the concentration of the substrate to make it more likely for the correct ESC to form.
36
What is non-competitive inhibition?
The inhibitor binds to another site on the enzyme (allosteric site). This binding changes the shape of the 'active site' preventing substrate molecules from forming an ESC. Eg: Cyanide binding to cytochrome oxidase inhibiting respiration.
37
What are immobilised enzymes?
Enzymes fixed to an inert matrix unable to move.
38
How can we achieve the inert matrix? (2)
Entrapment = Held inside a gel. Eg: Silica Gel Micro-encapsulation = Trapped inside a micro-capsule. Eg: Alginate beads.
39
How can we use the micro-encapsulation?
We can pack the beads containing enzyme into a glass column. The substrate can be added to one end.
40
What is the benefit of this micro-encapsulation experiment?
1. The rate of flow can be controlled. A slower rate for example will give more time for ESCs to form meaning product more yielded. 2. Enzymes less suseptible to changes in pH, temperature and addition of solvents as they are in their own 'micro environment'. 3. Enzymes can be added or removed easily, giving greater control over the reaction.
41
Considering the last flashcard, what are the four advantages to immobilising enzymes?
1. Enzyme can be easily recovered and reused. 2. Product not contaminated by enzyme 3. More stable at higher temperature 4. Catalyse reactions in wider range of pH due to the 'micro environment'
42
What are biosensors?
A device that combines a biomolecule such as an enzyme with a transducer, to produce an electrical signal which measures the concentration of the chemical.
43
What do biosensors contain?
They contain immobilised enzymes.
44
What can biosensors be used for?
To detect small concentrations of specific molecules in a mixture. Eg: Glucose in a sample of blood.
45
Give the step by step to how a biosensor works.
They consist of a specific immobilised enzyme, selectively permeable membrane and transducer connected to a display. 1. Selectively permeable membrane allows metabolite to diffuse through to the immobilised enzyme. 2. Metabolite binds to active site forming a product. 3. This product combines with the transducer which turns the chemical energy into an electrical signal. 4. The higher the concentration, the greater the electrical signal.