Adult SCs and Organoids Flashcards

Roisin L3 (36 cards)

1
Q

what is the name of the intermediate cell type between stem cells and differentiation cells?

A

progenitor cells, or transit-amplifying cells

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2
Q

define progenitor cell

A

a multipotent cell committed to a specific lineage, cannot differentiate into other cell types.
has a limited number of divisions before they terminally differentiate into target cell
little self-renewal

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3
Q

give two important examples of where adult tissue-specific stem cells are found

A

Blood
Intestine (intestinal lining)

also, epidermis (obviously)
(outermost of three layers of skin)

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4
Q

define hematopoiesis

A

blood cell production

a single progenitor cell gives rise to all blood cells, including RBC, WBC and platelets
differentiation pathway depends on extracellular signals

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5
Q

where does hematopoiesis occur?

A

usually in the bone marrow

except T lymphocytes - develop in the Thymus

(macrophages and some dentritic cells develop from monocytes circulating in blood)

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6
Q

define the stem cell niche and what it is comprised of

A

the microenvironment where a SC is found
Comprises of surrounding cells, ECM and molecular signals

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7
Q

Describe the role of the stem cell niche

A

provides the physical, chemical and cellular signals that influence cell fate.

regulated to maintain undifferentiated state
OR promote differentiation: extracellular signal molecules that decide the identity/fate of SCs present in high concentrations

Size of niche –> # of SCs
SC matures and moves out of niche

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8
Q

name three types of extracellular signalling in SC niches

A

Direct contact
Soluble factors
Intermediate cells

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9
Q

describe direct contact signalling in SC niches

A

directly binding to ECM or other cells through membrane-bound proteins and junctions

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10
Q

describe soluble factors as extracellular signalling in SC niches

A

diffusible signalling molecules secreted by cells in the niche
(bind to receptors on SCs to activate intracellular pathways)

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11
Q

describe how intermediate cells play a role in extracellular signalling in SC niches

A

produce signals / modify environment to indirectly influence SC behaviour

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12
Q

describe the physical structure of the lining of the small intestine

A

single-layered epithelium
arranged in villi (project into gut lumen) and crypts (descend into underlying CT)

draw diagram!

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13
Q

how is the epithelial lining of the small intestine renewed?

A

cell proliferation occurs in crypts

SCs at the crypt base, interspersed among non dividing differentiated cells (Paneth cells)

progeny of SCs move upward toward the villi, after a few divisions, will differentiate

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14
Q

Name four types of cells that SCs in the epithelium of the lining of the small intestine can differentiate into.

A
  1. Enterocytes
  2. Goblet cells
  3. Paneth cells
  4. Enteroendocrine cells
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15
Q

SCs in the lining of the small intestine can differentiate into enterocytes. define

A

enterocytes = absorptive cells

pick up nutrients and water, exclude pathogens/toxins

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16
Q

SCs in the lining of the small intestine can differentiate into goblet cells. define

A

goblet cells = mucus secreting cells

17
Q

what are the two main roles of Paneth cells?

A
  1. part of the innate immune system: secretes protein to kill bacteria
  2. secretes Wnt (a signalling molecule) that helps maintain SC population
18
Q

SCs in the lining of the small intestine can differentiate into enteroendocrine cells. define

A

specialised secretory cells: secrete hormones (serotonin and peptide hormones that aid in homeostasis maintenance/digestion)
IN RESPONSE TO the contents of the gut (ie. senses intestinal environment)

19
Q

name the two main lineages developing from HSCs (hematopoietic stem cells)

A

myeloid or lymphoid lineage

20
Q

what cells does the common myeloid progenitor (CMP) give rise to?

A

erythrocytes (RBC) (technically from the erythroid progenitor, early commitment)

+ innate immune cells: megakaryocytes (platelet-producing), granulocytes (neutrophils etc), monocytes, macrophages (sometimes from macrophage progenitor) etc

21
Q

what cells does the common lymphoid progenitor (CLP) give rise to?

A

T cells, B cells (both lymphocytes)
NK cells

22
Q

tissue aging is the result of

A

decline in SC function
ability to maintain tissue homeostasis decreases over time

23
Q

two types of tissues have cells that can divide even though fully differentiated, and hence can regenerate without the use of stem cells. name them

A

pancreatic beta cells
hepatocytes in the liver

small populations of SCs act as backup mechanism

24
Q

what is dedifferentiation?

A

a reversible loss of cell identity, often in response to stress or injury, where a differentiated cell downregulates its specialised functions and regains plasticity

differentiated cells –> progenitors
progenitors –> SCs

25
some tissues lack SCs and are not renewable. name two examples
auditory epithelium (ear) retinal photoreceptor epithelium (eye) when they degrade, function is irretrievably lost
26
considerations: using adult stem cells vs iPSCs
tissue choice: some adult SCs are inaccessible (eg. brain) disease modelling: end-stage disease may not be accurate modelled by iPSCs (as they have not "aged") economic: cheapest source that is sufficiently informative
27
name two assays for identifying tissue-specific SCs
1. lineage-labelling (in vivo) 2. in vitro multipotency assays
28
what is lineage labelling and how does it work ?
a technique used to mark cells and track their lineage over time genetic marker: eg. GFP tissue specific promotor for DNA recombinase (eg. Cre) to activate the marker if labelled cell's progeny persist over time and give rise to multiple differentiated cells, probably a SC
29
how do in vitro multi potency assays work?
isolate candidate SCs + grow in controlled environment, testing for 1. self-renewing and 2. differentiation uses FACS to isolate cells
30
what is FACS?
Flow Assisted Cell Sorting sorts cells by size and fluorescent labelling cells are collected into different tubes depending on fluorescence / light scattering
31
pros and cons of in vivo (lineage labelling) vs in vitro assays for SCs
lineage labelling: physiological but technically complex, good indication of SC identification in vitro: unbiased, compares many different cell populations and markers simultaneously and quickly. BUT may not reflect true in vivo behaviour (eg. tissue repair rather than homeostasis)
32
what is transcriptomics?
the study of the complete set of RNA transcript (the transcriptome) produced by the genome includes mRNA, non-coding RNAs, different splicing variants
33
what is the most common method of transcriptomics?
RNA-Seq ie. global sequencing of all RNAs
34
how does RNA-Seq help identify SCs?
allows examination of the gene expression profiles of different cell populations ---> reveals which genes are upregulated in SCs
35
in the intestinal crypt of the gut, what is the protein unique to SCs?
Lgr5 cells expressing Lgr5 were traced for a year was also checked in vitro and retained potency
36
what are organoids and why are they important?
mini organs - 3D cellular structures derived from SCs that mimic the key functional/structural complexities of that organ useful in studying complex biological processes / disease modelling / drug discovery / personalised medicine