amino acids Flashcards
(40 cards)
what is an amino acid?
monomeric units of proteins
20 different types
all contain C, H, O and N
same basic structure and an R group
types of side chains
non-polar
polar (uncharged)
polar acidic
polar basic
special
non-polar amino acids
hydrocarbon chains or rings
hydrophobic
alanine
isoleucine
leucine
methionine
phenylalanine
tryptophan
valine
structure of alanine
structure of phenylalanine
polar (uncharged) amino acids
contains hydroxyl or amide groups
interact with water
serine
threonine
asparagine
glutamine
tyrosine
structure of serine
structure of tyrosine
polar acidic amino acids
contains carboxylic acid group
negatively charged at physiological pH
charged
hydrophilic
aspartic acid
glutamic acid
polar basic amino acids
contain basic groups
positively charged at physiological pH
charged
hydrophilic
arginine
histidine
lysine
structure of lysine (polar basic)
structure of aspartic acid (polar acidic)
special amino acids
don’t fit in other groups
cysteine
glycine
proline
structure of cysteine
structure of glycine
what is an amide?
2 amino acids reacted
joined by a peptide bond (covalent)
formed by condensation reaction
releases molecule of water
primary structure proteins
sequence of amino acids in a polypeptide chain
determine subsequent structures
determined by code in DNA
secondary structure proteins
conformations adopted by different parts of a chain
folding of primary structure
hydrogen bonds form between atoms
alpha helix and beta pleated sheet
alpha helices
hydrogen bonds form between carbon and amino group of 4th amino acid
3.6 amino acids per turn
side chains (r) face outwards
beta sheet
hydrogen bonds form between carbonyl and amino group
side chains alternate above and below
can be parallel or antiparallel
parallel - chains run in same direction
antiparallel - chains go in opposite directions
tertiary structure proteins
overall 3D configuration
bending and folding of secondary
held by interactions between side chains
hydrogen bonds
electrostatic bonds
disulphide bridges (covalent bonds between sulphurs)
hydrophobic interactions
associate together and repel water
found in middle of 3D structure
folds into molecule with lowest potential energy needed
quaternary structure proteins
association between different polypeptides
two or more proteins aggregate to form a larger molecule
held by same interactions as tertiary
what are fibrous proteins?
protein that is NOT folded into a tertiary structure
eg collagen and keratin
what is keratin?
fibrous protein - no tertiary
usually have a quaternary structure
large portions in secondary
low water solubility
fibroin (beta-keratin)