Bacterial Sporulation and Inclusions Flashcards

(29 cards)

1
Q

CELL INCLUSIONS
BACTERIAL CELL RESERVES

What would happen if a bacterium was growing in a medium containing an
excess of a particularly nutrient(s)?

A

➢ The medium that a bacterium (or a community of bacteria), is growing in,
may be “unbalanced”.
➢ In the environment there is not a steady stream of nutrients. And therefore a
“feast or famine” scenario may be common.
➢ In such cases it may be possible for the organism to store an excess nutrient

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2
Q

Poly-β-hydroxyalkanoates (PHAs

A

lipids made of PHA monomers

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3
Q

Poly-β-hydroxybutyrate (PHB)

A

lipids made of PHB monomers.

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4
Q

LIPID INCLUSIONS

A

➢ Monomers can vary from C4 to C18.
➢ Lipid inclusions are synthesised when carbon is in excess
➢ Lipid inclusions are broken down for use in biosynthesis or energy
generation when required.

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5
Q

PHA inclusion structure

A

Inclusions are not simply granules
containing a particular molecule.

Enzymes are involved in their
formation and a specific metabolism is
often associated with them

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6
Q

Cyanophycin

A

An amino acid polymer
composed of an aspartic acid backbone
and arginine side groups

Accumulates in the form of
granules in the cytoplasm
during phosphate or sulfur
starvation, generally in the
early and mid-stationary phase.

Used as a nitrogen, and possibly, carbon-storage compound.

Mostly found in cyanobacteria and some heterotrophic bacteria

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7
Q

Volutin (polyphosphate granules)

A

Initially discovered in Spirullum
volutans.

Occurs in many bacterial species.

Granules composed of polyphosphate
.
Granules can be degraded and used as
sources of phosphate for nucleic acid
and phospholipid

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8
Q

Sulfur Inclusions

A

➢ Many Bacteria (and Archaea) are capable of oxidizing reduced sulfur
compounds such as H2S (hydrogen sulfide).
➢ These oxidations are linked to reactions of energy metabolism and
biosynthesis.
➢ In either case elemental sulfur may accumulate in the cell as visible
globules.
➢ Globules reside in the periplasmic space.
➢ Ultimately granules are oxidized to sulfate and disappear

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9
Q

Polysaccharide granules

A

➢ Many bacteria form glycogen granules.
➢ Glycogen is produced when carbon is in excess and is consumed when
carbon is limiting.
➢ Glycogen is a polymer of glucose with 1,4-α-glycosidic and 1,6-glycosidic
linkages

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10
Q

Gas vesicles

A

A gas vesicle is a spindle shaped structure (cylindrical tube closed by
conical end caps) made of protein.

Main function:

Gas vesicles confer buoyancy
to cells by decreasing their
density.

Gas vesicles occur in five phyla of the Bacteria and two groups
of the Archaea, but they are mostly restricted to planktonic
microorganisms, in which they provide buoyancy.

Main protein: (GvpA)
It is a small and highly hydrophobic
protein which is aligned as parallel
ribs
The ribs are clamped together by a
second protein (GvpC)

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11
Q

Magnetosome

A

➢ Inclusion composed of magnetite, Fe3O4.
➢ Bacteria orientate and migrate along the earth’s magnetic field.
➢ Function is unclear but thought to guide cells towards sediments
(field points downward) where O2 levels are lower.

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12
Q

Carboxysome

A

A carboxysome is a polyhedral shaped bacterial microcompartment
surrounded by a protein shell.

Inside the shell
Ribulose-1,5-bisphosphate
carboxylase/oxygenase (RuBisCO).
there is the enzyme

RuBisCO can act as a carboxylase
and an oxygenase.
So, CO2 and O2 compete for the
RuBisCO reaction.

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13
Q

How do the carboxysomes work?
Carboxylase function: To capture/store/trap/fix CO2

A

1- There is a plenty of bicarbonate (HCO3- )in the
cytoplasm of the bacteria.
2- Bicarbonate enters the carboxysome
3- The carbonic anhydrase enzyme in the
carboxysome converts bicarbonate into CO2.
4- In the presence of CO2, RuBisCO fixes CO2 into
PGA (phosphoglycerate).
in other words: CO2 is trapped into PGA.

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14
Q

Where are Carboxysomes found?

A

Carboxysomes are found in CO2 fixing bacteria such as cyanobacteria.

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15
Q

Thylakoid membranes

A

➢ A thylakoid is a membrane-bound compartment inside chloroplasts and
cyanobacteria.
➢ They are the site of the light-dependent reactions of photosynthesis.
➢ Cyanobacteria have structures called Phycobilisomes that act as light-
harvesting antennae attached to the membrane

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16
Q

Heterocysts

A

➢ Heterocysts are specialized nitrogen-fixing cells, produced by some
filamentous cyanobacteria.
➢ They form during nitrogen starvation conditions
➢ Vegetative cell: Vegetative bacteria are the bacterial cells that are metabolizing and undergoing binary fission. They are “alive” and replicating. Can do
photosynthesis.

Heterocyst: A cell that is differentiated and is now specialised to store nitrogen.

Cannot do photosynthesis.

17
Q

Heterocyst differentiation

A

➢ An oxygen-free environment is required for nitrogen fixation to occur.
➢ Thick heterocyst cell walls are relatively impervious to oxygen.
➢ Internal membranes are thylakoids that have lost their chlorophyll and provide
sites for nitrogenase.
➢ Other cell contents are generally lost.
➢ Heterocysts are connected to vegetative cells through special pores in their end
walls.
➢ Heterocysts are morphologically and functionally distinct from vegetative cells.
➢ This is an example of cell differentiation.

18
Q

SPORULATION - ENDOSPORES

A

➢ What is an endospores: dormant, non-reproductive structure produced
by bacteria (= bacterial resting cells)
➢ They are formed in some species in response to nutrient starvation (e.g.
carbon, nitrogen or phosphorous).
➢ These resting cells are characterised by:
* Low metabolic rates.
* Resistance to desiccation (dehydration), heat, irradiation and chemical
treatments (e.g. H2O2 and acids) compared to the actively growing cells.
➢ This means that endospores can survive for a very long time – even
centuries

19
Q

HOW LONG CAN ENDOSPORES LAST?

A

1- Suspension of endospores of the bacterium Clostridium aceticum prepared
in 1947 was transferred to sterile growth medium 34 years later: Growth
commenced within 12 hours.
2- Thermoactinomyces spores recovered from >2000 year old archaeological
sites and >7000 year old sediment cores have been revived (contamination?).
3- Spores from gut of extinct bee trapped in amber for 25-40 million years
have been revived.
4- Spores of a halophile trapped in salt crystals have been revived: Thought
to be 250 million years old

20
Q

WHY IS SPORULATION IMPORTANT

A

➢ Knowledge of heat-resistant forms essential in the development of
adequate sterilization methods:
* Culture media sterilization.
* Food and other perishable products.
➢ The most highly resistant spores can survive heating to 150°C.
➢ Most autoclaves operating at 121°C will kill spores of most species.

21
Q

WHICH BACTERIA CAN FORM ENDOSPORES?

A

➢ About 20 genera of Bacteria have been shown to form endospores.
➢ Only studied in detail in a few species of Bacillus and Clostridium.
➢ Genes essential for the formation of endospores seem to be universal in
these species.
➢ Phylogenetically the ability to produce endospores appears to be tied to a particular lineage of Gram-positive bacteria

22
Q

PATHOGENIC SPORE FORMERS

A

Many spore-formers are pathogenic:
* Bacillus anthracis (anthrax)
* B. cereus (food poisoning)
* B. thuringiensis (pathogenic to insects)
* Clostridium botulinum (botulism)
* C. tetani (tetanus)
* C. perfringens (gangrene and food poisoning)
* C. difficile (diarrhoea).

23
Q

SPORE STRUCTURE

A

Exosporium: Thin protein covering.
Spore coat: Layers of spore-specific proteins.
Cortex: Loosely cross-linked peptidoglycan layer.
Core: Core wall, cytoplasmic membrane, cytoplasm,
nucleoid, ribosomes etc

24
Q

KEY FACTS ABOUT ENDOSPORES

A

➢ The process of sporulation takes 8-10 h
➢ Endospores:
* 1000 × more resistant to heat.
* 10 × more resistant to UV irradiation.
* Very resistant to chemicals and desiccation.
* Metabolically inactive and are able to survive for long periods of
time.
* Can germinate and outgrow within minutes of being placed in
nutrients.

25
STAGES OF SPORULATION
STAGE 1 – Axil Filament Formation 1. Bacterial chromosomes become thread-like, known as the axial filament. 2. DNA is attached to the poles of the cell. 3. This is achieved through binding of a protein located at the poles of the cell to bacterial DNA with high affinity. STAGE 2 – Forespore formation 1. Asymmetric cell division occurs 2. Cell membrane forms a septum near one end which encloses a small portion of DNA in the forming forespore. 3. The septum forming at the other end of the cell is disassembled. STAGE 3 – Engulfment of forespore 1. Mother cell membrane grows around the forespore engulfing it. The forespore becomes a cell within a cell. These two entities communicate with each other through the rest of the process. 2. Forespore now has two membrane layers. STAGE 4 – Synthesis of Exosporium 1. DNA of mother cell disintegrates. 2. Exosporium (outermost protein covering) synthesis occurs. 3. Forespore starts forming primodial cortex between two membranes. 4. Dehydration of cell. STAGE 5 – SASP and dipicolinic acid sythesis 1. Production of small acid soluble proteins (SASPs) and dipicolinic acid occurs. 2. Incorporation of calcium ions with dipicolinic acid occurs forming calcium dipicolinate. 3. Cytoplasm is further dehydrated 4. A coat layer is formed. SASPs and calcium picolinate ➢ Calcium dipicolinate is unique to spore-forming bacteria. * Reduces water content of the core. * Comprises ~10% dry wt of the endospore. ➢ SASPs have at least two functions. * Bind tightly to DNA and protect it from damage. * Changes DNA from B to A form. * Used as a carbon and energy source for outgrowth of a new vegetative cell upon germination STAGE 6 & 7 – Maturation & Release 1. Endospore is matured 2. Cell is lysed 3. Endospore is released
26
What is DNA-B and DNA-A?
A-DNA Right-handed 99% of DNA B-DNA Right-handed Z-DNA Left-handed
27
GERMINATION
Germination is the conversion from the dormant state to vegetative growing cells and occurs in 3 stages: Activation: By heat or ageing, species-dependent, some will germinate immediately. Germination: Hydration of protoplast, loss of refractility and resistance, loss of DPA-Ca2+. Can be triggered by small molecules. Occurs rapidly (minutes). Outgrowth: New vegetative cell is synthesized and emerges from the spore coat.
28
Example of Germination: Bacillus thuringiensis
Spore-forming Gram-positive bacteria. Highly specific insecticidal activity. Produces a protein crystal inclusion body upon sporulation
29
Bt insecticidal activity
Several different strains and subspecies of B. thuringiensis exist and produce different toxins that kill different insects with exquisite specificity. Examples: Lepidoptera (includes moths and butterflies) Diptera (flies and midges) Coleoptera (beetles) Nematodes (roundworms) Used as alternative to DDT and organophosphates since the 1920s. Bt toxin is used as specific insecticides under trade names such as Dipel and Thuricide. Toxin genes have been used to genetically modify crops so that specific insects feeding on them will die.