Basic Bacteriology Flashcards

(75 cards)

1
Q

Bacterial structures: Specialized structures

A

Spore:
Made of keratin-like coat; dipicolinic acid; peptidoglycan, DNA
Function: gram + only, survival - resist dehydration, heat, chemicals

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2
Q

Bacterial structures: capsule

A

Organized, discrete polysaccharide layer (except poly-D glutamate on B anthracis)
Protects against phagocytosis

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3
Q

Bacterial structures: glycocalyx

A

Loose network of polysaccharides

Mediates adherence to surfaces, esp. Foreign surfaces (e.g. Indwelling catheters)

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4
Q

Bacterial structures: Outer membrane

A

Outer leaflet: contains endotoxin (LPS/LOS)
Embedded proteins: porins and other outer membrane proteins (OMPs) - most are antigenic
Inner leaflet: phospholipids
Gram - only
Endotoxin: lipid A induces TNF and IL-1; O polysaccharide component antigenic
Porins: transport across outer membrane

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5
Q

Bacterial structures: Periplasm

A

Space between cytoplasmic membrane and outer membrane in gram (-) bacteria (peptidoglycan in middle)
Gram - only
Accumulates components exiting gram - cells, including hydrolysis enzymes (eg beta-lactamases)

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6
Q

Bacterial structures: Cell wall

A

Peptidoglycan is a sugar backbone with peptide side chains cross-linked by transpeptidase
Net like structure gives rigid support, protects against osmotic pressure damage

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7
Q

Bacterial structures: Cytoplasmic membrane

A

Phospholipid bilayer sac with embedded proteins (e.g. Penicillin-binding proteins and other enzymes)
Lipteichoic acids (gram + only) extend from membrane to exterior
Site of oxidative and transport enzymes; PBPs involved in cell wall synthesis
Lipoteichoic acids induce TNF and IL-1

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8
Q

Spherical Morphology

A

Gram +: staphylococcus (clusters), streptococcus (chains or pairs)
Gram -: moraxella catarrhalis, Neisseria

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9
Q

Rods (bacillus) morphology

A

Gram +: bacillus, clostridium, corynebacterium, gardnerella (gram variable), lactobacillus, listeria, mycobacterium (acid fast), propionibacterium
Enterics (Gram -): bacteriodes, campylobacter, E.coli, enterobacter, helicobacter, klebsiella, proteus, pseudomonas, salmonella, serration, shigella, vibrio, yersinia
Respiratory (Gram -): bordetella, burkholderia cepacia, haemophilus (pleomorphic), legionella (silver stain)
Zoonotic (gram -): bartonella, brucellosis, francisella, pasteurella

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10
Q

Branching filamentous morphology

A

Gram +: Actinomyces, Nocardia (weakly acid fast)

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11
Q

Pleomorphic morphology

A

Gram -: chlamydiae (Giemsa), Rickettsiae (Giemsa)

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12
Q

Spiral morphology

A

Gram -: borrelia (Giemsa), leptospira, treponema

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13
Q

No cell wall bacteria

A

Mycoplasma, urea plasma (contain sterols, which do not gram stain)

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14
Q

Gram Stain

A

First line lab test in bacterial identification. Bacteria with thick peptidoglycan layer retain crystal violet dye (gram +); bacteria with thin peptidoglycan layer turn red or pink (gram -) with counterstain

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15
Q

Bugs that do not gram stain well

A

These Microbes May Lack Real Color
Treponema (too thin to be visualized)
Mycobacteria (cell wall has high lipid content)
Mycoplasma, ureaplasma (no cell wall)
Legionella, Rickettsia, Chlamydia (primarily intracellular, also chlamydia lack classic peptidoglycan because of decreased muramic acid)

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16
Q

Giemsa stain

A

Certain Bugs Really Try my Patience

Chlamydia, Borrelia, Rickettsia, Trypanosomes, Plasmodium

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17
Q

Periodic acid-Schiff stain

A

Stains glycogen, mucopolysaccharidoses; used to diagnose whipped disease (tropheryma whipplei)
PaSs the SUGAR

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18
Q

Ziegler-Neelsen stain (carbon fuchsin)

A

Acid fast bacteria (mycobacteria - stains my colic acid in cell wall), Nocardia; Protozoa (eg cryptosporidium oocytes)
Alternative is auramine-rhodamine stain for screening (more sensitive but less specific)

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19
Q

India Ink stain

A

Cryptococcus neon organs; mucicarmine can also be sued to stain thick polysaccharide capsule red

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20
Q

Silver Stain

A

Fungi (eg Coccidioides, pneumocystis jirovecii), legionella, helicobacter pylori

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21
Q

Fluorescent Ab

A

Use to identify many bacteria and viruses

eg FTA-ABS for confirming syphilis

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22
Q

Selective media

A

Favors the growth of particular organism while preventing growth of other organisms
E.g Thayer-Martin agar contains antibiotics that allow the selective growth of Neisseria by inhibiting the growth of other sensitive organisms

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23
Q

Indicator (differential) media

A

Yields a color change in response to the metabolism of certain organisms
E.g. MacConkey agar contains a pH indicator; a lactose fermenter like E.coli will convert lactose into acidic metabolite –> color change

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24
Q

Special culture requirements: H.influenzae

A

Media: Chocolate agar

-factor V (NAD+) and X (hematin)

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25
Special culture requirements: N.gonorrhoeae, N.meningitidis
Media: Thayer-Martin Selectively favors growth by Neisseria by inhibiting growth of gram + organisms with Vancomycin, gram - organisms (except Neisseria) with Trimethoprim and Colistin and fungi with Nystatin *Very Typically Cultures Neisseria*
26
Special culture requirements: B.pertussis
Media: Bordet-gengou agar (*Bordet for bordatella*); Regan-Lowe medium Potato; charcoal, blood, antibiotic
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Special culture requirements: C.diptheriae
Media: Tellurite agar; loffler medium
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Special culture requirements: M.tuberculosis
Media: Lowenstein-Jensen agar
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Special culture requirements: M.pneumoniae
Media: Eaton agar | Requires cholesterol
30
Special culture requirements: Lactose-fermenting enteritics
Media: MacConkey agar | Fermentation produces acid, causing colonies to turn pink
31
Special culture requirements: E.coli
Media: Eosin-methylene blue (EMB) agar | Colonies with green metallic sheen
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Special culture requirements: Legionella
Media: charcoal yeast extract agar buffered with cysteine and iron
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Special culture requirements: Fungi
Media: Sabouraud agar | *Sab's a FUN-guy*
34
Aerobes
Use an O2-dependent system to generate ATP Examples: Nocarida, pseudomonas aeruginosa, mycobacterium tuberculosis (*Nagging Pests Must Breath*) Reactivation of M.tuberculosis has predilection for the apices of the lungs
35
Anaerobes
Examples: Clostridium, bacteriodes, fuse bacterium, Actinomyces (*anaerobes Can't Breathe Fresh Air*) They lack catalase and/or superoxide dismutase and are thus susceptible to oxidative damage (foul smelling, difficult to culture, produce gas in tissue) Anaerobes are normal flora in the GI tract and typically pathogenic elsewhere. Aminoglycosides are ineffective against anaerobes because the antibiotics require O2 to enter into bacterial cell
36
Obligate intracellular
Rickettsiae, CHlamydia, COxiella - rely on host ATP | *stay inside cells when it's Really CHilly and COld*
37
Faculties intracellular
Salmonella, Neisseria, Brucella, Mycobacterium, Listeria, Francisella, Legionella, Yersinia pestis *Some Nasty Bugs May Live FacultativeLY*
38
Encapsulated Bacteria
Pseudomonas aeruginosa, Streptococcus pneumoniae, Haemophilius influenzae type B, Neisseria meningitidis, E.coli, Salmonella, Klebsiella pneumoniae and group B Strep *Please SHINE my SKiS* Capsules serve as an anti phagocytic virulence factor --> then are opposites and cleared by the spleen instead. Asplenic pts have decreased opsonizing ability and thus increased risk for severe infections (give S.pneumo, HiB, & N.menigitidis vaccines) Capsular polysaccharide + protein conjugate serves as Ag in vaccines
39
Encapsulated Bacteria Vaccines
``` Some vaccines containing polysaccharide capsule Ag are conjugated to a carrier protein, enhancing immunogenicity by promoting TC activation and subsequent class switching A polysaccharide Ag alone cannot be presented to TCs PCV, PPSV, HiB, Meningococcal vaccine ```
40
Urease-positive organisms
``` Proteus, Cryptococcus, H pylori, Ureaplasma, Nocardia, Klebsiella, S epidermis is, S saprophyticus (*Pee CHUNKS*) Potentiates struvite (ammonium magnesium phosphate) stones, urease hydrolyzes urea to release ammonia and CO2 --> increases pH ```
41
Catalase-Positive organisms
Catalase degrades H2O2 into H2O and bubbles of O2 before it can be converted into microbicidal products by the enzyme myeloperoxidase People with chronic granulomatous disease (NADPH oxidase deficiency) have recurrent infections with certain catalase + organisms Examples: Nocardia, Pseudomonas, Listeria, Aspergillus, Candida, E.coli, Staphylococci, Serratia, B.cepacia, H.pylori (*Cats Need PLACESS to Belch their Hairballs*)
42
Pigment producing bacteria
Actinomyces israelii - yellow suffer granules (comprised of filaments of bacteria) S.aureus - yellow pigment P.aeruginosa - blue-green pigment Serratia marcescens - red pigment
43
In-Vivo biofilm producing bacteria
S.epidermidis - catheter and prosthetic device infections Veridans streptococci (mutans, sanguinis) - dental plaques, infective endocarditis P.aeruginosa - respiratory tree colonization in CF pts, contact lens-associated keratitis Nontypeable (unencapsulated) H.influenzae - otitis media
44
Virulence factor: Protein A
Binds Fc region of IgG. Prevents opsonization and phagocytosis Expressed by S.aureus
45
Virulence factor: IgA protease
Enzyme that cleaves IgA | Secreted by S.pneumoniae, H.influenzae type B, Neisseria (SHiN) in order to colonize respiratory mucosa
46
Virulence factor: M protein
Helps prevent phagocytosis Expressed by group A streptococci Shares similar epitope to human cellular proteins (molecular mimicry) possibly underlies the autoimmune response seen in acute rheumatic fever
47
type III secretion system
Also known as "injectisome" - needle like protein appendage facilitating direct delivery of toxins from certain gram (-) bacteria Pseudomonas, Salmonella, Shigella, E.coli) to eukaryotic host cell
48
Bacterial structures: Appendages
Flagellum: made of proteins, function for motility Pilus/fimbria: made of glycoproteins, function to mediate adherence of bacteria to cell surface, sex pilus forms during conjugation
49
Bacterial genetics: Transformation
Ability to take up naked DNA (i.e. From cell lysis) from environment (AKA competence) A feature of many bacteria - S.pneumoniae, HiB, Neisseria (SHiN) Any DNA can be used. Adding deoxyribonuclease to environment will degrade backed DNA in medium thus no transformation is seen
50
Conjugation: F+ x F-
F+ plasmid contains genes required for sex pilus and conjugation. Bacteria without this plasmid are termed F-. Sex pilus on F+ bacterium contains F- bacterium. A single strand of plasmid DNA is transferred across the conjugal bridge ("mating bridge") No transfer of chromosomal DNA
51
Conjugation: Hfr x F-
F+ plasmid can become incorporated into bacterial chromosomal DNA, termed high frequency recombination (Hfr) cell. Replication of incorporated plasmid DNA may include some flanking chromosomal DNA. Transfer of plasmid and chromosomal genes
52
Bacterial genetics: Transposition
Segment of DNA (eg transposon) that can "jump" (excision and reintegration) from one location to another, can transfer genes from plasmid to chromosome and vice versa. When excision occurs, may include some flanking chromosomal DNA, which can be incorporated into a plasmid and transferred to another bacterium. e.g. VanA gene from vancomycin resistant enterococcus to S.aureus
53
Generalized Transduction
A "packaging" event. Lytic phage infects bacterium, leading to cleavage of bacterial DNA. Parts of other bacterial chromosomal DNA may become packaged in phage capsid. Phage infects another bacterium, transferring these genes
54
Specialized Transduction
An "excision" event. Lysogenic phage infects bacterium; viral DNA incorporates into bacterial chromosome. When phage DNA is excised, flanking bacterial genes may be excised with it. DNA is packaged into phage capsid and can infect other bacterium
55
Bacterial toxins encoded in lysogenic phage
``` *ABCDs* group A strep erythogenic toxin Botulinum toxin Cholera toxin Diphtheria toxin Shiga toxin ```
56
Spore-forming bacteria
``` Some bacteria forms spores at end of the stationary phase when nutrients are limited. Spores are highly resistant to heat and chemicals. Have dipicolinic acid in their core, have no metabolic activity. Must autoclave to potentially kill spores (as is done with surgical equipment) by steaming at 121 degrees C for 15 minutes Bacillus anthracis (Anthrax), Bacillus cereus (Food poisoning), Clostridium botulinum (botulism), clostridium difficle (pseudomembranous colitis), clostridium perfringens (gas gangrene), clostridium tetani (tetanus) ```
57
Main features of Exotoxins
Source: certain gram + and gram - bacteria Secreted from cell Polypeptide Location of genes: plasmid or bacteriophage High amounts of adverse effects Antigenicity: induced high-tiger Abs called antitoxins Vaccines: toxoids used Heat stability: destroyed rapidly at 60 degrees C (except staph enterotoxin) Typical diseases: tetanus, botulism, diphtheria
58
Main features of Endotoxins
Source: outer cell membrane of most gram - bacteria Not secreted from cell Lipid A component of LPS (structural part of bacteria; released when lysed) Location of genes: bacterial chromosome Low amount of adverse effects Clinical effects: fever, shock (hypotension), DIC MOA: inducing TNF, IL-1 & IL-6 Poorly antigenic Vaccines: none - no toxoid formed Heat stability: stable at 100 degrees C for 1 hr Typical diseases: meningococcemia; sepsis by gram - rods
59
Exotoxins: Inhibiting protein synthesis - C.diphtheriae
Toxin: diphtheria toxin (AB toxin) MOA: inactivation of elongation factor (EF-2) Manifestation: pharyngitis with pseudomembranes in throat and severe lymphadenopathy (bull neck)
60
Exotoxins: Inhibiting protein synthesis - Pseudomonas aeruginosa
Toxin: exotoxins A (AB toxin) MOA: Inactivation of EF-2 Manifestation: host cell death
61
Exotoxins: Inhibiting protein synthesis - Shigella app.
Toxin: Shiga toxin (ST - AB toxin) MOA: inactivate 60S ribosome by removing adenine from rRNA Manifestation: GI mucosal damage --> dysentery; ST also enhances cytokine release, causing hemolytic uremic syndrome (HUS)
62
Exotoxins: Inhibiting protein synthesis - Enterohemorrhagic E.coli (EHEC)
Toxin: Shiga-like toxin (SLT - AB toxin) MOA: inactivation of 60S ribosome by removing adenine from rRNA Manifestation: SLT enhances cytokine release, causing HUS (stereotype O157:H7), but does not invade host cells
63
Exotoxins: Increase fluid secretion - Enterotoxigenic E.coli (ETEC) - Heat Labile
Toxin: Heat Labile toxin (LT - AB toxin) MOA: over activates adenylate cyclase (increased cAMP) --> increase Cl- secretion in gut and H2O efflux Manifestation: watery diarrhea (*Labile in the Air (Adenylate cyclase)*)
64
Exotoxins: Increase fluid secretion - Enterotoxigenic E.coli (ETEC) - Heat-stable
Toxin: Heat-stable toxin (ST - AB toxin) MOA: over activates guanylate cyclase (increased cGMP) - decreased reabsorption of NaCl and H20 I the gut Manifestations: watery diarrhea (*stable on the Ground (guanylate cyclase)*)
65
Exotoxins: Increase fluid secretion - Bacillus anthracis
Toxin: edema toxin (AB toxin) MOA: mimic the adenylate cyclase enzyme (increased cAMP) Manifestations: likely responsible for characteristic edematous borders of black Escher in cutaneous anthrax
66
Exotoxins: Increase fluid secretion - Vibrio cholerae
Toxin: Cholera toxin (AB toxin) MOA: over activates adenylate cyclase (increased cAMP) by permanently activating Gs --> increased Cl- secretion in gut and H2O efflux
67
Exotoxins: Inhibit phagocytic ability - Bordetella pertussis
Toxin: pertussis toxin (AB toxin) MOA: over activates adenylate cyclase (increased cAMP) by disabling Gi impairing phagocytosis to permit survival of microbe Manifestation: Whooping cough - child cough on expiration and "whoops" on inspiration (toxin may not actually be the cause of coughs; can cause "100-day cough" in adults)
68
Exotoxins: Inhibit release of neurotransmitter - Clostridium tetani
Toxin: Tetanospasmin (AB toxin) MOA: protease that cleave SNARE, a set of proteins required for neurotransmitter release via vesicular fusion Manifestation: spastic paralysis, risks sardonicus and lockjaw, toxin prevents release of INHIBITORY (GABA and glycine) NTs from Renshaw cells in spinal cord
69
Exotoxins: Inhibit release of neurotransmitter - Clostridium botulinum
Toxin: Botulinum toxin (AB toxin) MOA: protease that cleaves SNARE, a set of proteins required for NT release via vesicular fusion Manifestation: flaccid paralysis, floppy baby; toxin prevents release of STIMULATORY (ACh) signals at the neuromuscular junction --> flaccid paralysis
70
Exotoxins: Lyse cell membranes - Clostridium perfringes
Toxin: alpha toxin MOA: phospholipase (lecithin are) that degrades tissue and cell membrane Manifestation: degradation of phospholipids --> myonecrosis (gas gangrene) and hemolysis (double zone of hemolysis on blood agar)
71
Exotoxins: Lyse cell membranes - Streptococcus pyogenes
Toxin: Streptolysin O MOA: protein that degrades cell membrane Manifestations: Lyses RBCs; contributes to Beta-hemolysis; host Abs against toxin (ASO) used to diagnose rheumatic fever (do not confuse with immune complexes of poststreptococcal glomerulornephritis)
72
Exotoxins: Superantigens causing shock - Staph aureus
Toxin: toxic shock syndrome toxin (TSST-1) MOA: binds to MHC II and TCR outside of Ag binding site to cause overwhelming release of IL-1, IL-2, IFN-gamma, and TNF-alpha --> shock Manifestation: toxic shock syndrome - fever, rash, shock; other toxins cause scalded skin syndrome (exfoliating toxin) and food poisoning (enterotoxin)
73
Exotoxins: Superantigens causing shock - Strep pyogenes
Toxin: Exotoxin A MOA: binds to MHC II and TCR outside the Ag binding site to cause overwhelming release of IL-1, IL-2, IFN-gamma, TNF-alpha --> shock Manifestation: Toxic shock syndrome: fever, rash, shock
74
Endotoxin
LPS found in outer membrane of gram - bacteria (cocci and rods). Composed of O Ag + core polysaccharide + lipid A (toxic component) Released upon cell lysis or by living cells by blebs detaching from outer surface of membrane (vs. Exotoxin which is actively secreted) Three main effects: MP activation (TLR4), complement activation and tissue factor activation
75
Facts of endotoxins
``` *ENDOTOXINS* Edema Nitric Oxide DIC/Death Outer membrane TNF-alpha O-Ag + core polysaccharide + Lipid A eXtremely heat stable IL-1 and IL-6 Neutrophil chemotaxis Shock ```