Bioc L06 and L07 Cytogenetics Flashcards
What is cytogenetics?
The study of chromosomes and chromosomal
abnormalities
How common are chromosomal abnormalities and what are some effects?
1/150 live births
leading cause of mental retardation
1st trimester: 50% of fetal losses
2nd trimester: 20% of fetuses lost
Leading known cause of pregnancy loss
What is a karyotype?
How many chromosomes are in a normal somatic cell?
A microscopic photograph of chromosomes that have been histochemically arrested in metaphase. Used to visualize chromosome size and #
There are 46 chromosomes (23 pairs) in somatic cells and 23 single chromosomes in germ cells
How are chromosomes classified after size?
By the position of the centromer, 3 types:
- Metacentric
- Submetacentric (short p-arms)
- Acrocentric (stalk and satellite for p-arms)
Convention that the p-arm (shorter) will be on top in a karytope.
What are acrosomes how many are there?
Acrosome are chromosomes with very short p-arms that connect to stalks and satellites. stalks encode ribosomal RNA
There are 5 acrocentric autosomes: 13, 14,15, 21 and 22
The q arm has repeat sequence and encodes ribosomal RNA, it can be damaged without much issue (ex: robertsonian translocation)
What is a submetric chromosome?
A chromosome where the p and q-arms have unequal length.
What is Fluorescent in situ hybridization (FISH)?
A way to view chromosomes.
A fluorescently labeled single‐stranded DNA segment
(probe) is exposed to denatured chromosome (either in
metaphase, prophase or interphase)
The probe undergoes complementary base pairing
(hybridization) only with the complementary DNA sequence and can be seen under a microscope.
What is spectral karyotyping?
FISH with multiple colored probes for multiple chromosomes.
What are 4 things FISH is used for?
- microdeletions: see if DNA is missing
- gene amplification: A flouescent band on one chromosome would be bigger than the flourescent band on the homologous chromosome
- abnormal karyotype: e.g. finding and extra X chromosome
- chromosome rearrangements: usually cancer cytogenetics, affected chromosomes would have 2 colors from reaaranging with another chromosome
What is tetraploidy?
Cells that contain four copies (4N) of each chromosome (92 total)
Tetraploidy can be caused by a mitotic failure in the early embryo. All of the duplicated chromosomes migrate to one of the two daughter cells. It can also result from the fusion of two diploid zygotes.
What is monoploidy?
The loss of a chromosome set, which is
not seen in humans.
What is aneuploidy?
How is it caused?
The gain or loss of a specific chromosome (trisomy or monosomy)
Usually meiotic nondisjunction (two chromosome homologs migrate to same daughter cell)
All autosomal monosomies are lethal
What autosomal trisomy of 3 diferent chromosomes it compatible with life?
Trisomy 13, 18 and 21 probably because those chromosome have the fewest genes.
What trisomy (of one chromosome) is most compatible with life?
What are the symptoms?
How does it happen?
When is it more common?
Trisomy 21 because chromosome 21 contains the fewest genes.
Down syndrome
non-disjunction w/ extra chromosome contributed from the mother
It is more common with mothers giving birth after age 35, but, there are more down syndrom births from younger women because fewer older women have kids
What is Edward Syndrome?
Trisomy 18, most lethal trisomy, only 10% alive after 1 year
What is Platau Syndrome?
Trisomy 13, similar survival as Edwards
Characteristics include cleft lip, deafness, small head, developmental retardation
Why are sex chromosome abnormalities more tolerated?
X-inactivation, if some phenotype is seen it’s due to incomplete x-inactivation.
since pseudoautosomal regions are not inactivated,
duplication or loss of these regions will result in increased or decreased gene dosage of these genes located in PARs.
What is an example of an X monosomy?
Turner Syndrome 45,X
WIth only one X chromosome, there will only be one copy of the psudoautosomal genes resulting in half the psudoautosomal gene products
Symptoms include lack of sexual development, short stature, webbed neck, bent forearms
What is Klinefelter syndrome?
Trisomy 47, XXY
Results in double psudoautosomal gene product.
Most common symptom is infertility in men.
What pairs between X and Y chromosomes during recombination?
The pseudoautosomal regions: (PAR1 and PAR2)
The SRY (sex‐determining region on the Y) is proximal to PAR1
How can there be XX males?
From aberrant recombination in the father between the X and Y chromosomes transferring the SRY gene to the X chromosome. Offspring with XX that would normally be female are male.
How can there be XY females?
Same reasons as XX males but offspring inherit the Y chromosome missing the SRY gene, resulting in XY females.
What are balanced translocations?
The interchange of genetic material between nonhomologous chromosomes.
What are balanced translocations?
Two chromosomes break and switch material that was broken. Usually no phenotype because no genetic material is lost. This individual can produce 6 different types of gametes. 2 gametes from alternate segregation where non homologous regions align and 4 gametes from adjacent segregation where portions of homologous sequences align
Karyotype example: 46, XX, t(3,6)(q13:q14)


