BMS1060 - Biochemsitry Wk1-2 Flashcards

(60 cards)

1
Q

All atoms of a particular element all have the same number of _______.

What are isotopes?

A

protons

isotopes = atoms of the same elemt but a different number of neutrons.

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2
Q

Atomic weight =

A

number of protons + number of neutrons

(rarely a whole number - average of different isotopes)

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3
Q

What is the difference between intermolecular and intramolecular bonds?

A

INTERmolecular - act between molecules
INTRAmolecular - act within a molecule

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4
Q

Give two properties of compounds with ionic bonding.

A

High m.p and b.p and water soluble

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5
Q

Do covalent structures or ionic structures have a higher b.p and why?

A

Ionic structures: Stronger bonds

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6
Q

What is a dative bond?

A

A covalent bond between two atoms where one atom gives both of its electrons to the bond.

e.g. haem

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7
Q

What is electronegativity?

What do the values range from?

A

A measure of the tendency of an atom to attract a bonding pair of electrons.

0.7-4.0

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8
Q

Where in the periodic table are elements most electronegative and why?

A

As you go ALONG (–>) the period, more protons so greater positive charge - greater attraction of electrons.

As you go UP the group, less electron shielding so greater attraction of electrons.

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9
Q

What causes the bond in a molecule to be polar?

A

Differences between the atoms in electronegativity.

Electron distribution skewed towards the more electronegative element.

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10
Q

What are the 3 types of intermolecular bonds?

A

Van der Waals
Dipole-dipole interactions
Hydrogen bonding

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11
Q

Describe Van der Waals

A

Electrons move around by chance - uneven distribution of electrons.
This causes an instantaneous slight negative charge in one side of the atom.

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12
Q

Describe Dipole-Dipole interactions

A

Found in polar molecules - differences in electronegativity between atoms.
Electrons pulled more towards one atom, causing slight neg and sligh pos charges at either end of molecule/bond.

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13
Q

Describe hydrogen bonding.

Which bonds commonly have H-bonding?

A

Weak electrostatic attraction formed between polar molecules which occurs when an H atom binds to a lone pair of electrons on a highly electronegative atom.

O-H, F-H, N-H, Cl-H

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14
Q

1 mole of a subsance contains…

A

The same number of atoms as in 12g of pure carbon-12 (6.02x10^23)

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15
Q

What is the equation to work out the n.o of moles of a substance using mass and Mr?

A

n.o. of moles = mass (g) / formular weight

n = m / Mr

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16
Q

1L = ? dm^3

A

1L = 1 dm^3

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17
Q

What is the equation to work out the n.o of moles of a substance using concentration and volume?

A

n.o. of moles = concentration x volume

n = cv

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18
Q

What is Collision Theory?

A

The concept that reactant molecules must collide with sufficient energy and in the correct orientation to react.

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19
Q

What is Activation Energy?

What are the two types? Enthalpy change?

A

Ea = the energy needed to react two reactants together.

Exothermic - energy released - neg ΔH
Endothermic - energy consumed - pos ΔH

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20
Q

What happens in exothermic and endothermic reactions?

A

MEXO BENDO

Endothermic - energy consumed when bonds are broken (+ΔH)

Exothermic - energy released when bonds are formed (-ΔH)

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21
Q

What do catalysts do?

A

Lower activation energy - so a greater proportion of molecules can react.

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22
Q

In terms of the Maxwell Boltzmann Distribution, what happens to the % of molecules that react when temperature increases and decreases?

A

Temp increase - % of molecules with sufficient energy to react increases.

Temp decrease - % of molecules with sufficient energy to react decreases.

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23
Q

What determines the rate of a reaction?
(Maxwell Boltzmann Distribution)

A

The number of molecules with activation energy.

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24
Q

When is a reaction ‘feasible’?

A

When it is ‘energetically favourable’ at a certain temperature.

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25
How are endothermic reactions still feasible?
Because there's an increase in entropy. Disorder is thermodynamically favourable (creating order requires energy/effort).
26
What is entropy?
A measure of disorder.
27
What two things affect entropy?
State of substance (e.g. gases have greatest E) Size of molecule (small molecules have higher E)
28
What is Gibbs free energy?
The energy available in a substance to do work.
29
What is the equation to work out Gibbs free energy?
G = H - TS G = Enthalpy - (Temp x Entropy) note: enthalpy and entropy affect whether a reaction is feasible or not
30
In terms of Gibbs free energy, when is a reaction thermodynamically feasible?
Negative ΔG - EXOGERNIC - thermodynamically feasible Positive ΔG - ENDERGONIC - not thermodynamically feasible
31
When can some positive ΔG reactions be feasible?
When the reaction is couple up wth a negative ΔG reaction and the energy is shared across. e.g. (Cellular respiration - 2280kj mol^-1 ATP synthesis +30.5 kj mol^-1 Energy from respiration given to ATP synthesis reaction)
32
What are the two words in chemistry to describe 'water loving' and 'water hating' molecules?
Hydrophilic (water-loving) Hyrophobic (water-hating)
33
What is hydrolysis and condensation?
Hydrolysis - water used to break down a compound Condensation - a bond is formed and a water molecule produced
34
What happens in the dissociation of water?
H2O <--> H+ + OH- H+ released associates with another H2O to form H3O+ ion. 2 H2O <--> H3O+ + OH- At R.T. around 1 in 1 billion molecules of water dissociates (rare, but happens)
35
What is an acid? What is the difference between a strong and weak acid?
A substance that donates H+ Strong acids completely dissociate in water (HCl + H2O --> H3O+ + Cl-) Weak acids partially dissociate in water (CH3COOH + H2O <--> CH3COO- + H3O+)
36
What is a base? What is the difference between a strong and weak base?
Bases either: - directly produce OH- ions by dissociation OR - pull H+ away from H2 to form OH- Strong - completly dissociates in water (KOH --> K+ + OH-) Weak - partially dissociates in water (NH3 + H2O <--> NH4+ + OH-)
37
What is the equation for pH? What is the scale?
pH = -log10[H+] 1M to 1x10^-14M (0-14 on pH scale) M = molar conc (in this case of H+ in a solution)
38
What pH does blood plasma have? What happens to patients when their blood has a lower pH? When does this usually happen?
Around 7.4 Patients can have acidosis In diabetic patients - fatty acids get broken down at a higher rate, or when fasting/heavy exercise.
39
What do buffers do? What do they consist of?
They keep the pH constant by resisting changes with the addition of H+ or OH-. Consist of (almost) equal concs of conjugate bases and acids.
40
What is the buffering region?
Where the buffer works most effectively. In buffering region, the pH is maintained around the pKa.
41
What is pKa?
The pH where concs of acid and its conjugate bases are the same (in buffers)
42
What are two physiological buffer systems?
Carbonic acid and Dihydrogen Phosphate
43
What is the structure of an amino acid?
C - Chiral carbon -> superimposable R - there are 20 different R groups that naturally occur in proteins
44
Almost all amino acids are ___steroismers
L (literally makes an L shape)
45
Describe the formation of a peptide bond (image):
46
What are the 5 classifications of amino acids by R groups?
R-groups: 1) Non-polar (--CH3) 2) Polar (--CH2OH) 3) Aromatic (contain rings) 4) Positively charged (--CH2NH3+) 5) Negatively charged (--CH2COO-)
47
What does cystine have that allows it to form disulphide cross-links with other cystine molecules?
S-H group (polar R group)
48
What causes the charge of an amino acid to change?
Changes in pH
49
What is the isoelectric point?
The pH where the net charge on the molecule is neutral (+ and - balanced)
50
What is 1 Dalton (1Da) equal to?
1 amino acid (1 amn)
51
Carbohydrates: what are their general formula? What type of of steroisomers do they usually form? What forms do they exist in?
Cn(H2O)n D-steroisomers Linear and Cyclic forms - in solution there is equalibrium between linear and cyclic forms.
52
Here we have alpha and beta D-glucose. What is the overarching term for these molecules?
Anomers 'OH look - Ants on the ground, Birds in the air!'
53
What are the common disaccharides of glucose and their monomers?
Maltose - 2xD Glucose Lactose - D Glucose + D Galactose Sucrose - D Glucose + D Fructose
54
What are the common polysaccharides of glucose and their monomers?
Starch (amylose or amylopectin) - alpha-glucose Glycogen - branched - alpha-glucose Cellulose - Beta-glucose
55
Describe the structure of fatty acids - saturated and unsaturated: (image)
56
Name 4 types of lipids
- Triglycerides - Phopholipids - Glycolipids - Sterols
57
Describe Triglycerides
3 fatty acids linked to glycerol Most common way fats circulate as in the blood and stored in the body. Can be burned for energy or used for insulation.
58
Describe Phospholipids
Hydrophilic head and 2 hydrophobic fatty acid tails. Make up membranes and envelopes (double membranes).
59
Describe Glycolipids
Lipid covalently bonded to an oligosaccharide. Parts of plant and animal cell membranes. Particular glycolipids determine blood groups.
60
Describe Sterols
Lipids found in membranes. Series of hydrocarbon rings -> makes structure 'stiffer' Includes cholesterol and steroid hormones.