BS2013 Flashcards
(142 cards)
Name the four different classes of receptors
Ligand-gated ion channels
RTKs
GPCRs
Nuclear receptors
What is an agonist?
A drug that binds to a receptor, evoking a response
How does an agonist work?
1) Binding of the drug to the receptor
2) Activation of the receptor leading to a response
Define occupancy?
What is the equation?
The proportion of receptors that are occupied by the drug
Number of receptors occupied/total number of receptors
How can occupancy be measured directly?
Radioligand binding (radiolabelled agonist)
Method:
(i) Prepare cells or membranes e.g. guinea pig ileum –
detergent treatment and centrifugation
(v) Count radioactivity of filter
(iv) When equilibrated remove unbound drug by
filtration (bound drug remains attached to filter)
(iii) Add radiolabel to samples/filters at different
concentrations and equilibrate
(ii) Aliquot out membranes onto filters
What is the law of mass action?
Rate of a reversible chemical reaction is
proportional to the product of the concentration of the
reactants.
What is Kd?
A measure of affinity
A high Kd means a low affinity
What is a drug?
A substance that can modify biological functions of living organisms
What are statins?
Competitive inhibitors of the enzyme HMG-CoA reductase which is a key enzyme in the rate-limiting step of cholesterol synthesis
Why do pro-drugs need enzymes?
They are more stable forms of drugs which require chemical/enzymic modification before they become active
What are the different types of protein drugs can target?
Enzymes
Transporters (inhibitors or false substrates)
Ion channels (blockers or modulators)
Receptors (agonists and antagonists)
Describe GPCRs
7 transmembrane receptors
No intrinsic enzyme activity
Transmembrane alpha-helices
Coupled to heterotrimeric G-proteins
Higher diversity between families in the extracellular, ligand-binding domain
Larger conformational changes in the intracellular downstream signalling module
N-terminal on the outside, C-terminal on the inside
What happens when a GPCR is activated
TM5 (extends) and 6 (displaced) are shifted upon activation (uncovers binding site for GEFs)
GDP exchanges for GTP on the G-protein, causing dissociation of the beta-gamma sub-unit. This is stimulated by GEFs (guanine nucleotide exhcange factors)
How is a G-protein turned off?
They have their own GTPase activity (alpha sub-unit) which cleaves GTP to GDP
What do the different G-protein sub-types do?
Galpha-i = inhbits adenylyl cyclase Galpha-s = activates adenylyl cyclase Galpha-q = activates phospholipase C-beta
Gs pathway
Adrenaline/noradrenaline is the ligand which acts on B-adrenoceptors
Activates adenylyl cyclase, which, in turn, produces cAMP, which, in turn activates cAMP-dependent protein kinase (PKA), this inhibits myosin light-chain kinase (MLCK) which causes vasodilation
Pertussis toxin inhibits G alpha-s GTPase activity
Gi pathway
Adrenaline/noradrenaline is the ligand which acts on A2-adrenoceptors
Inhibits adenylyl cyclase activity, decreasing the production of cAMP from ATP, which, in turn, results in decreased activity of cAMP-dependent protein kinase
Inhibited by Cholera
Gq pathway
Adrenaline/noradrenaline is the ligand which acts on A1-adrenoceptors
Activates PLC which cleaves PIP2 into diacyl glycerol (DAG) and IP3.
DAG remains bound to the membrane and can activate PKC
IP3 is released as a soluble structure into the cytosol.
IP3 binds to IP3 receptors, in the sarcoplasmic reticulum (SR) to cause them to open and release calcium ions into the cell.
Give an example of an action the beta-gamma sub-unit does when activated
In the heart
ACh is the ligand that works on M2 muscarinic receptors (Gi-linked)
Beta-gamma sub-unit has receptors on the potassium channels and causes a conformational change in them, increasing permeability to K+ and hyperpolarising the membrane
How is GPCR signalling terminated?
There are phosphorylation sites exposed with the shifting of TM5 and 6 which are phosphorylated by GPCR kinases
GPCR can no longer interact with G-proteins
New binding site for beta-arrestin which downregulates the activity of the GPCR. It interaxts with clatherin and AP2 to form clatherin-coated pits which internalise the receptor.
Beta arrestin can also show signalling activity
Becomes enclosed in an endosome, not responsive to ligand
The endosome either fuses with lysosymes or recycles the GPCR
What are RTKs?
Enzyme coupled transmembrane receptors (they have intrinisc enzyme activity)
Main ligands are growth factors (divalent)
What happens when an RTK is activated?
A conformational change resulting in dimerisation
The intracellular kinase domains phosphorylate each other’s tyrosine hydroxyl groups
The phosphorylation opens the substrate-binding site by pushing the activation loop away which makes the kinase fully active
Activated RTKs can activate phospholipase-C gamma by phosphorylating it
What two domains mediate protein recruitment to activated RTKs?
SH2 domain
PTB (phosphotyrosine binding) domain
Adaptor proteins act as the link when a protein doesn’t have one of these domains
What does the SoS protein do?
SoS binds to RTKs via the GRB2 adaptor protein
It’s a GEF for the G protein Ras which activates the protein kinase Raf -> Mek -> Erk -> phosphorylates transcription factors in the nucleus