C1.3: Photosynthesis Flashcards

(40 cards)

1
Q

What is photosynthesis?

A

A process that generates chemical store of energy (complex organic compounds/carbs) from simple inorganic compounds
-> light dependent: use light -> ATP, split water (photolysis) + make H+ ions
-> light independent: use ATP and H+ to fix CO2 (glucose)
-> O2 waste product

Form of energy conservions:
ENDOTHERMIC
Light energy -> chemical energy
-> energy stored in bonds of organic compounds

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2
Q

What are the word and chemical equations for photosynthesis?

A

Carbon dioxide + water -> oxygen + glucose

6CO2 + 6H2O -> 6O2 + C6H12O6

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3
Q

What are the uses of glucose (made in photosynthesis)?

A

STORAGE AS STARCH:
Starch + cellulose -> polysaccharides found in platns
Starch -> chemical store of energy
Cellulose -> structural molecule, builds cell wall

RESPIRATION

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4
Q

What are the different photosynthetic pigments?

A

Chlorophyll:
=> absorb blue-violet and red
Chlorophyll a -> blue-green color
-> primary pigment reaction center
-> P680 or P700
-> Contains Mg atom -> light hit -> electrons excited
Chlorophyll b -> yellow-green color
-> accessory pigment
-> absorbs 500-640 nm

Carotenoids:
=> absorb blue-violet
-> absorbed light not normally absorbed by chlorophyll -> pass to primary pigment
β carotene -> orange color
Xanthophyll -> yellow color

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5
Q

What is chromatography?

A

An experimental technique used to seperate mixtures
-> different components travel through material at different speeds

Reparation factor (Rf value) calculated for each component

Two main types:
Paper: mixture of pigments passed through paper (cellulose)
Thin layer (TLC): mixture passed through thin layer of absorbant (eg silica gel) -> more distinct

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6
Q

Explain the tools and method of an experiment separating photosynthetic segments using chromatography

A

TOOLS:
Leaf sample
Distilled water
Pestle + mortar
Filter paper
Capillary tube
Chromatography solvent
Propanone
Pencil
Ruler

METHOD:
1. Draw straight line in PENCIL around 1cm above bottom of filter paper
2. Cut a section of leaf and add into mortar
3. Add 20 drops of propanone and use pestle to grind
-> release pigments using propanone (solvent) and pressure
4. Extract some pigment using a capillary tube, spot onto centre of pencil line
5. Suspend the paper in chromatography solvent, leave until solvent almost reach top of paper
-> solvent level below pencil line
6. Remove pamper and draw pencil line marking where solvent moved to
7. Calculate Rf value (distance by pigment/distance by solvent)

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7
Q

Explain the results and limitations of an experiment separating photosynthetic segments using chromatography

A

RESULTS:
Rf value show how far dissolved pigment travels
- larger molecules -> travel slower -> smaller Rf
- more soluble (in mobile phase) -> travel faster -> higher Rf value

The specific Rf value will tell you what pigment it is:
Carotenoids -> usually highest Rf
Chlorophyll b -> lower Rf
Chlorophyll a -> between other 2

LIMITATIONS:
Paper -> not as specific
- does seperate to distinguished different pigments
Chromatography -> no data on amount of pigment present, wavelength they absorb, etc.
-> need colorimetry for that

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8
Q

How does TLC work?

A

Thin Layer Chromatography
-> separation based on polarity

Silica gel TLC plates:
Network solid of silicon dioxide with hydroxyl groups (polar)
-> dipole-dipole interactions

More polar -> more interactions -> slower (strongly absorbed to stationary phase)
Nonpolar -> interacts less -> faster (less absorbed to stationary phase)

UV light can be used to show points

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9
Q

What is an absorption spectrum?

A

A graph that shows the absorbance of different wavelengths of light (eg: like by a particular pigment in the chloroplast)

Chlorophyll:
Light energy absorbed -> excitation of electron -> transfer of electron -> series of reactions -> photosynthesis
=> green part of spectrum largely reflected -> why it appears green

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10
Q

What was Engelmann’s experiment?

A

1882: German scientist Theodore Engelmann -> experiment to study the effects of colored light on photosynthesis

Light bulb
Prism
Filamentous algae
Water tank
Aerobic bacteria

Light bulb + prism -> different colored light
Filamentous algae -> if color of light was absorbed -> photosynthesis -> O2
Aerobic bacteria -> attracted to where O2 produced -> FIRST ACTION SPECTRUM OF PHOTOSYNTHESIS

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11
Q

What is an action spectrum?

A

A graph that shows the effectiveness of different colors of light for a particular reaction
-> eg: a graph that shows the rate of photosynthesis at different wavelengths of light

Rate of photosynthesis highest in blue-violet/red regions
-> the wavelengths that are absorbed

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12
Q

Action spectra vs absorption spectra

A

Both graphs have 2 main peaks:
Blue-violet and red regions of light spectrum
-> supports idea that most light energy is absorbed at these wavelengths -> fastest rate of photosynthesis

Both have a trough in the green-yellow region:
Support ideas that the least light energy is absorbed at these wavelengths -> slowest rate of photosynthesis

BUT
Action = relative rates (+ shared by all types of pigments)
Absorption = wavelengths absorbed

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13
Q

What are the characteristics of chloroplast?

A

result of endocytosis (endosymbiotic theory)

Usually between 2-10 um
Disc shaped
Larger than mitochondria
Double membrane
Contains circular DNA, 70s ribosomes
-> synthesize protein needed in chloroplast replication

Grana = stack of thylakoids
Thylakoids (membrane bound compartments) -> contain chlorophyll
Joined by lamellae (thin and flat thylakoid membrane)

Site of photosynthesis:
Light dependent - thylakoids
Light independent - stroma

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14
Q

What different factors affect photosynthesis?

A

Light intensity

Temperature

CO2 concentration

pH

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15
Q

How can you determine the rate of photosynthesis?

A

Determined by measuring volume of O2 produced or CO2 consumed (at different wavelengths of light -> use different colored filters)

Oxygen: count bubbles/collect gas produced

Carbon dioxide: harder to measure, indirectly as loss in CO2 increases surrounding pH

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16
Q

How would you draw an action spectrum for photosynthesis?

A

Step 1: draw + label
Draw x-axis -> wavelength (nm)
-> make 400 smallest value, 700 largest
Draw y-axis -> rate of photosynthesis/% of maximum rate
-> make 0 smallest value, 100 largest

Step 2: draw the plot
Should be 2 peaks -> one on either end -> blue-violet/red light
Should be trough in middle -> green light
Smooth curve

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17
Q

Explain/describe an experiment for this research question:
Does the rate of photosynthesis (number of bubbles released per minute) of Elodea increase as the light intensity increases?

A

EQUIPMENT:
Aquatic plant in water
Powdered sodium hydrogen carbonate (NaHCO3)
Glass funnel
Boiling tube
Lamp
Glass tank filled with water
(Use common sense to set up im lazy)

METHOD:
Place aquatic plant in beaker of water
Place lamp set distance from plant
Record number of bubbles in 3 min
-> or use gas syringe to collect volume of gas
-> or use data logger
Repeat for different distance between lamp and plant
-> 3 trials for each distance -> calculate mean

VARIABLES TO CONTROL:
Temp:
Glass tank with water -> absorb heat
Use LED -> lest heat given off
CO2 concentration:
Water used around plant boiled + cooled to remove dissolved CO2
Set mass of NaHCO3 added to water (0.1 M)
-> ensure CO2 not limiting

RESULTS:
Graphs distance between plant and light x number of bubbles per minute -> show link
Graphs light intensity x rate of photosynthesis
-> positive correlation to start (light intensity limiting factor)
-> at some point plateau (now smth else limiting factor)

18
Q

How can other factors affecting photosynthesis be tested?

A

CO2 CONCENTRATION:
Same basic setup
Boil + cool water, change mass of NaHCO3 by increments of 0.01 M
Record rate (bubbles/min)
Constant temp (water bath w/ thermometer)
Constant light intensity (lamp fixed distance)
Graph of CO2 concentration x rate -> similar trend to light intensity

TEMPERATURE:
Same basic setup
Boil + cool water, 0.1 M NaHCO3
Record rate (bubbles/min)
Vary temp from 5-50°C using water baths + thermometer
Constant light intensity (lamp fixed distance)
Constat CO2 (same amount of NaHCO3)
Graph of temperature x rate:
- increase in temp -> increased rate
-> increase in KE of enzyme and substrate -> more collision -> more formation of enzyme-substrate complexes
- increase until optimum temp
- increase in temp after optimum temp -> decrease
-> enzymes denature -> no ES complex -> no catalyze reaction

19
Q

What are carbon dioxide enrichment experiments used for?

A

To predict the future rates of photosynthesis and plant growth

Global warming -> increased greenhouse gas
- crucial to study effects of CO2 on plant growth/photosynthesis
- clearer idea of potential future risks

Eg:
Enclosed greenhouse experiments
Free air carbon dioxide enrichment experiments (FACE)

20
Q

What are enclosed greenhouse experiments work?

A

Allow variables to be manipulated or controlled in order to establish the impact of different factors
-> light
-> CO2
-> temp
-> wavelengths of light
Other variables controlled to ensure only tested variable is affecting

Only small species -> need to fit in a greenhouse

21
Q

What are free air carbon dioxide enrichment experiments (FACE)?

A

Experiments carried out in natural ecosystems where CO2 pumped into the area to increase localized CO2 concentrations

Allow larger plants/trees to be studied

Other variables canot be controlled -> can be monitored to establish relationships

22
Q

What are some characteristic of photosynthetic plants?

A

Absorb certain wavelengths of light
Reflect other wavelengths (the color we see)
Arranged in photo systems in thylakoids membranes

Chlorophyll a,b and pheophytin a,b => porphyrin ring and long hydrocarbon tail

Chlorophyll -> magnesium center
Pheophytin -> no magnesium center

Different polarities due to different functional groups with oxygen

23
Q

What are photosystems?

A

Pigments grouped together as structures -> photosystems
-> in thylakoids membrane

PS -> many chlorophyll molecules + accessory pigments + reaction center
=> in presence of light pigments emit electrons -> transfer to primary reaction center

PSI: reaction center P700 (activated by wavelength 700nm)
PSII: reaction center P680 (activated by wavelength 680nm)
-> when chlorophyll absorb light -> reaction center -> electron in chlorophyll get excited to higher energy level = chlorophyll photoactivated

24
Q

Why are there multiple pigments in photosystems?

A

Many pigments -> allow photosystem to efficiently absorb light of different wavelengths
-> all necessary for photosynthesis

Structural arrangement of pigments/acessory pigments -> allow electrons to be excited in controlled manner
-> directly along electron transport chain

25
Where does the light dependent reaction take place?
In the thylakoids intermembrane space/across thylakoid membrane Thylakoid membrane contain transfer chain -> electron passed along electron carriers in series of redox reactions
26
What happens during the light dependent reaction? What are the products made?
PHOTOLYSIS: The splitting of water molecules using light energy (PSII) CHEMIOSMOSIS: Synthesis of ATP using electrochemical gradients produced by H+ protons -> proton gradient across thylakoid membrane when proton pump from chloroplast matrix -> thylakoid space REDUCTION OF NADP: NADP+ accepts electrons (from photophsphorylaiton) and H+ protons => NDPH (PSI) PRODUCTS: Light energy -> chemical energy in the form of ATP and NADPH (reduced NADP) => transferred to light-independent reaction (in stroma) Oxygen -> waste product
27
LIGHT DEPENDENT REACTION: photolysis
Occurs in PSII - reaction center acts as oxidizing agent -> water molecules split Water -> proton + electrons + oxygen (2H₂O → O₂ + 4H⁺ + 4e⁻) - oxygen waste product -> diffused out via stomata - electron -> electron transport chain - proton picked up by NADP -> NADPH Important because it generates electron for: - replacement of electron in PSII - subsequent reactions
28
Why is the oxygen produced important?
3.5 billion years ago: photosynthetic prokaryotes -> photosynthesize -> oxygen in atmosphere Millions years later: algae and plants evolve to photosynthesize 2.2 billions years ago: oxygen concentration reach 2% (great oxidation event) 600 million years ago: multicellular organisms (mostly photosynthetic) -> oxygen concentration to 20% 300 million years ago: peak oxygen concentration in air 35% -> contributed to large size of organisms at the time Current: oxygen level around 21% -> result of human activities Other changes due to photosynthesis: - minerals in ocean oxidized - oxygen in ocean - distinctive rock formations prodcued - led to banded iron formation -> most important source of iron ore - methane and CO2 levels fell => ice age
29
LIGHT DEPENDENT REACTION: cyclic phosphorylation
PSI only, linear Light absorbed by PSI -> passed to primary pigment (P700) -> electron in primary pigment excited -> emitted from chlorophyll (photoactivation) Electron capture by electron acceptor -> electron transported via electron transport chain -> then back to chlorophyll => provide energy to transport H+ from stroma -> thylakoid via proton pump => build up of protons in thylakoid -> drive synthesis of ATP (chemiosmosis)
30
LIGHT DEPENDENT REACTION: non-cyclic phosphorylation
Both PSI and II, linear electron pathway Light absorbed by PSII -> passed to primary pigment (P680) -> Excited electrons (PSII)-> electron acceptor -> passed down series of electron carriers (ETC) excited electron slowly release energy, used to generate proton gradient (used to produce ATP) -> excited electron fall and picked up by reaction center (PSI) -> pair of electrons (FROM PSI) and H+ (from water) used to produced NADPH -> electron from photolysis used to replace ones lost from PSII -> electrons from PSII replace ones lost in PSI => main products are ATP and NADPH
31
What us phosphorylation?
The term for the overall process of using light energy and electron transport chain to generate ATP from ADP
32
LIGHT DEPENDENT REACTION: chemiosmosis
CHEMIOSMOSIS: the movement of chemicals (protons) down their concentration gradient -> energy released used by ATP synthase PROTON GRADIENT: Electrons passed through ETC -> release energy -> used to pump protons from stroma to thylakoid -> high concentration of protons build up inside thylakoid (create concentration gradient) -> photolysis also contributed to gradient SYNTHESIS OF ATP: Proton gradient powers ATP synthesis -> protons travel down their concentration gradient (thylakoid to stroma) through ATP synthase (membrane protein) -> energy released by movement of proton -> ADP + Pi = ATP (phosphorylation) => this part is CHEMIOSMOSIS
33
LIGHT DEPENDENT REACTION: reduction of NADP
PSI Chlorophyll in reaction center absorb photon of light energy -> electrons in reaction center photoactivated -> passed to protein outside of thylakoid membrane (ferredoxin) -> ferredoxin reduced -> reduced ferredoxin + H+ from from chemiosmosis + NADP+ -> NADPH NADP+ + 2H⁺ + 2e⁻ → NADPH + H+ - now carry pair of electron -> passed to light-independent reaction
34
What are the three main steps of the Calvin cycle?
Calvin cycle = light independent reaction In stroma -> within double membrane -> protein rich environment with enzymes needed for Calvin cycle 1. Carbon fixation: Enzyme rubisco catalyze fixation of CO2 2. Reduction: Glycerate-3-phosphate reduced to triose phosphate 3. Regeneration: Ribulose biphosphate regenerated from triose phosphate =>CO2 converted to carbs (glucose) => Calvin cycle relies on products from light dependent
35
LIGHT INDEPENDENT REACTION: carbon fixation
Carbon fixation: the process of CO2 being removed from the external environment and becoming part of the plant/fixed CO2 + ribulose biphosphate ruBP (5C) -> unstable 6C compound -> 2 x glycerate-3-phosphate (GP) Catalyzed by enzyme rubisco -> most abundant enzymes on earth -> works slowly -> need high concentrations -> not effective at low CO2
36
How can the products of photosynthesis/the Calvin cycle be used to make organic substances?
Triose phosphate (TP) and glycerate-3-phosphate (GP) Hexose sugars = 2 x TP Starch = many hexose sugars (many TP) Lipids/triglycerides = fatty acid (TP -> glycolysis -> link reaction pathway -> acetyl coenzyme A -> conjoined) + glycerol (TP) Proteins = certain amino acids from GP
37
Explain Calvin’s lollipop experiment
Calvin used Chlorella algae in this glass vessel (lollipop vessel) -> given sufficient light, CO2, hydrogen carbonate -> all had normal C (C-12) At the start of experiment -> carbon replaced with radioactive carbon (C-14) Sample of algae taken at different internvals -> into hot alcohol to stop photosynthesis Carbon compound separated by chromatography Compounds with C-14 identified by autoradiography -> after 5 seconds showed mostly GP -> GP first product (carbon fixation) -> after 30 seconds range of different compounds
38
LIGHT INDEPENDENT REACTION: reduction (of GP)
Energy from ATP + hydrogen from NADPH used to reduce GP to triose phosphate (3C)
39
LIGHT INDEPENDENT REACTION: regeneration
After reduction: 1/6 of TP -> converted into usable product 5/6 of TP -> used to make RuBP (5C) => 5 TP = 3 RuBP Once regenerated -> continue cycle
40
How are the light dependent and independent reactions interdependent?
Products from light dependent (NADPH and ATP) -> used directly in the Calvin cycle to produce carbs => low light intensity -> products produced slower -> limits GP to TP conversion Once NADPH oxidized in Calvin cycle -> NADP+ return to light dependent to accept electrons at end of ETC => high light intensity -> light dependent more quick -> more NADPH + ATP to drive Calvin cycle => but if NADPH not returned -> light dependent restricted CO2 in the form of HCO3 ions -> accept proton from PSII when water splits during photolysis -> important in ETC CO2 also important in carbon fixation => lack of CO2 prevent both processes