Cancer I Flashcards
(36 cards)
Define whether a gene that regulate cell division, immortality, apoptosis, angiogenesis, or metastasis is an oncogene or tumor suppressor gene
They can both act on all of these, however, how they act are different. An oncogene tends to increase the progression of the cell cycle through a variety of ways, including promoting cell division, inhibiting apoptosis, promoting immortality, promoting angiogenesis, promoting metastasis. A tumor suppressor gene tends to restrict the cell cycle by inhibiting cell division, promoting apoptosis, inhibiting immortality, inhibiting angiogenesis, and inhibiting metastasis.
Explain how oncogenes act in a dominant fashion and tumor suppressor genes in a recessive fashion
Oncogenes tend to act in a dominant fashion because a gain of function mutation in a single copy of the cancer critical gene can drive a cell towards cancer. If you get one mutation on one chromosome in a oncogene, you have a an active oncogene (not protooncogene anymore!). For tumor suppressor genes, however, you need TWO mutated tumor suppressor genes in order to get an cancerous gene! Both need to be present.
Tumor suppressors act recessive at the phenotypic level (both alleles must be mutated/lost for cancer to develop), but the “first hit” germline mutation at the genotypic level is actually inherited in an autosomal dominant fashion.
Cancer incidence with ages
- One of the themes is that cancer is a very complex disease that is not just the result of a single mutation
- Incidence is established with age, it increases with age.
- If it was a single mutation then the individual would have an equal chance of occurring at any time in that person’s life. However, it doesn’t work this way suggesting that these mutations occur and accumulate during life not due to a single traumatic experience rather it is due to an accumulation of events
Explain the concept of penetrance
Penetrance is the percentage of the carriers who do not show evidence for the disease
Penetrance is usually age related, meaning that the trait is not expressed in most carriers at birth but occurs with increased frequency as the carriers get older. For example, germline mutations in mismatch repair genes associated with hereditary nonpolyposis colorectal cancer (HNPCC) are incompletely penetrant. So not all individuals who carry these mutations will get colorectal cancer, but the risk increases as individuals age. About 20 percent of carriers will never develop colorectal cancer.
- An example of how losing these cancer genes can increase your risk of cancer is shown
- This is a resulting mutation in MMR genes. Individuals who carry or inherit a mutation in these genes has a greater risk
- This line NEVER reaches 100 Not everyone with the mutation in the MMR gene will get cancer! Other factors come into play. Has to do with penetrance, or the frequency at which a phenotype is observed
- A large amount of people will get cancer though due to age!
- Not all mutations are fully penetrate
- If you have one you mutation the chance of getting cancer is drastically higher now
Two Hit Hypothesis
In 1971, Dr. Alfred Knudson proposed the two-hit hypothesis to explain the early onset at multiple sites in the body of an inherited form of cancer called hereditary retinoblastoma. Inheriting one germline copy of a damaged gene present in every cell in the body was not sufficient to enable this cancer to develop. A second hit (or loss) to the good copy in the gene pair could occur somatically, though, producing cancer. This hypothesis predicted that the chances for a germline mutation carrier to get a second somatic mutation at any of multiple sites in his/her body cells was much greater than the chances for a noncarrier to get two hits in the same cell.
Tumor suppressors act recessive at the phenotypic level (both alleles must be mutated/lost for cancer to develop), but the “first hit” germline mutation at the genotypic level is actually inherited in an autosomal dominant fashion.
- Two hit hypothesis.
- It takes not one mutation, but a combination of mutations in order to get cancer.
- You can inherit one bad copy and then you have a mutation in your lifetime and then you get cancer
What are two ways for cells to die?
1) Apoptosis:
- Key features are blebbing off
- In the body it doesn’t stop at this point, it signals to other cells to phagocytose them and engulf them and they do so without causing an inflammatory response
2) Necrosis:
- This causes an inflammatory response because things go really bad in the cell and cause the cell to burst
- Thus these are two distinctly different cell death responses –> One causes an inflammatory response and one does not
-Apoptosis is NOT a bad thing! Some cells need to be removed because they are abberant or because there are too many! In early development apoptosis is required!
p53
It is activated by DNA damage to activate cell death signals
Bcl2
Inhibits cell death signals from reaching the caspases
Describe the steps leading to the activation if the caspase cascade in the death receptor or Extrinsic Apoptotic Pathway
Death Receptors
Trimeric Fas ligands on the surface of a killer lymphocyte interact with trimeric Fas receptors on the surface of the target cell, leading to clustering of several ligand-bound receptor trimers (only one trimer is shown here for clarity). Receptor clustering activates death domains on the receptor tails, which interact with similar domains on the adaptor protein FADD (FADD stands for Fas-associated death domain). Each FADD protein then recruits an initiator caspase (caspase-8) via a death effector domain on both FADD and the caspase, forming a death-inducing signaling complex (DISC). Within the DISC, two adjacent initiator caspases interact and cleave one another to form an activated protease dimer, which then cleaves itself in the region linking the protease to the death effector domain. This stabilizes and releases the active caspase dimer into the cytosol, where it activates executioner caspases by cleaving them.
EXTRINSIC PATHWAY: USES DEATH RECEPTORS!
- The extrinsic pathway is activated by death receptors
- Starts with a killer lymphocyte with a Fas Ligand that binds to the Fas death receptor and activates a death domain that is on the death receptors cytoplasmic tail.
- Now, a FADD (cytoplasmic adaptor protein) with the death domain binds to the death domain via its own and it has a death effector domain. Then, the caspase 8 can bind to the death effector domain of the FADD
- Then, DISC (death inducing signal complex) is assembled from all of this. Once this pathway is activated, the adapter proteins bind to the receptor and can lead to the recruitment and dimerization of the caspases because they are brought into close proximity of one another.
- They can dimerize and then cleave each other to be an active caspase 8 that leads to apoptosis.
- Its Caspase 8 is then cleaved and dimerizes. Then it is activated and activates executioner caspases
-Triggered by a receptor, triggers the formation of DISC, get active caspase 8 which then activated excutioner caspases to get apoptosis
- Once a signal has been received, it binds to the death receptor. Thus, a death receptor ligand has been received.
- There are then cytoplasmic receptor adaptor proteins (TRADD and FADD). The combination of the ligand bound to the receptor leads to the activation or accumulation of the cytosolic adapter proteins which leads to the activation of Caspase 8.
- Then you get the activation of Caspase 8 which is the FIRST Caspase to be activated in the death receptor pathway!
- Then Caspase 8 can funnel through 2 different pathways:
1) It can directly result in the activation of effector caspases leading to apoptosis
2) It can cross-talk to the intrinsic pathway through the cleavage of a Blc2 like protein, pro-apoptotic BH3-only protein called tBID
Describe the steps leading to the activation if the caspase cascade in the mitochondrial or Intrinsic Apoptotic Pathway
Mitochondrial Dependent
The mitochondria receives an apoptotic signal and thus results in the release of cytochrome-c. The Cytochrome-c can then associate with the Apaf1, which causes the Apaf1 to unfold partially to expose a CARD or caspase recruiting domain which allows it to interact with other Apaf1s at this site. Then, 7 Apaf1’s that where activated by cytochrome-c can form a ring-like structure called an apoptosome and recruit the Caspase 9 that also has a CARD domain. Now the Caspase 9 is active and can therefore cleave executioner caspases that can then cause apoptosis.
- It is using the mitochonria –> It is mitochondrial dependent, not death receptors
- Upon activation of the death receptor pathway, the tBID will activate the BAX and BAD which then trigger the mitochondria to release cytochrome-c and SMAC.
- Then, cytochrome-c interacts with APAF1 to activate caspase 9, which activates the effector caspases and triggers apoptosis
- There is also a parallel mechanism with SMAC which inactivates XIAP to prevent it from inactivating Caspase 9 and allow the Caspase 9 to remain active and activate the effector caspases
- The effector caspases can then trigger the activation of the endonucleases, result in the cell surface alterations and the cytoskeletal reorganization. Then you get apoptosis and phagocytosis
Understand the Mechanisms of Caspase Activation
- There are the initiator caspases (8 and 9) that exist in the cytosol as procaspases which are not active and need to be activated. They have an adaptor binding domain and protease domain and within the protease domain there is a cleavage site
- When the apoptotic signal is received, whether extrinsic or intrinsic pathway, you get dimerization, activation and cleavage. They activate themselves via the cleavage.
- They are inactive monomers that dimerize, they process each other to produce an active caspase that are activating the executioner caspases that are already dimers. The executioner caspase is then cleaved and now activated and lead to apoptosis
- They dimerize and become active
- Executioner caspases already exist as inactive dimers and they are activated via cleavage and then cause apoptosis by cleaving substrates
- They auto-cleave themselves to get activated
DNA Fragmentation During Apoptosis via endonuclease CAD
In healthy cells, the endonuclease CAD associates with its inhibitor, iCAD. Activation of executioner caspases in the cell leads to cleavage of iCAD, which unleashes the nuclease. Activated CAD cuts the chromosomal DNA between nucleosomes, resulting in the production of DNA fragments that form a ladder pattern (see B on next slide) upon gel electrophoresis.
Just know that part of the process of apoptosis DNA cleavage
BCL-2 family members are related by regions
of sequence and structural homology
They all have the BH3 domain but that is the only BH domain the 3 of them share! It mediates the direct interactions between pro-apoptotic and anti-apoptotic family members. They also share the transmembrane domain.
Bcl2 protein regulate the intrinsic pathway of apoptosis!
Anti-Apoptotic Bcl2 Family Protein
Guardians (pro-survival). They include Bcl2 and BclXL
Pro-Apoptotic Bcl2 Family Protein
Effectors (pro-apoptotic). They include Bax and Bak
Pro-apoptotic BH3-only protein
Initiators (pro-apoptotic). They include Bad, Bid, Bim, Puma and Noxa.
Explain how Bcl2 Proteins Regulate the Intrinsic Pathway of Apoptosis
When activated by an apoptotic stimulus, the effector Bcl2 family proteins (Bax, Bak) aggregate on the outer mitochondrial membrane and release cytochrome c and other proteins from the intermembrane space into the cytosol by an unknown mechanism.
- Bax and Bak
- Here is an example of how the process occurs
- Within the mitochondria are the inactive Blc2 family proteins such as Bak and Bax.
- Bax and Bak are located within the membrane of the mitochondria and upon apoptotic stimulus, these Bax and Bak proteins will homodimerize and lead to a process that is not too well understood to create a type of channel which then allows for the release of cytochome-c into the cytosol.
- These allow the formation of dimers within the mitochondrial membrane which allow for the release of cytochrome-c and other proteins such as SMAK.
In the absence of an apoptotic stimulus, anti-apoptotic Bcl2 family proteins (e.g., Bcl-2, BclXL) bind to and inhibit the effector Bcl2 family proteins on the mitochondrial outer membrane (and in the cytosol—not shown).
- -Within the inactive mitochondrial pathway, you have the inactive effector Bcl2 family proteins present within the membrane surface.
- They are not allowed to dimerize because of the action of the active anti-apoptotic Bcl2 family protein that prevents the dimerization of the inactive effector Bcl2 family protein.
- Bcl2 anti-apoptotic proteins block the dimerization which leads to the cytochrome-c
- This is how the Bcl2 proteins block the pathway so that apoptosis cannot occur
- active anti-apoptotic Bcl2 family protein blocks the dimerization and thus activation
- JUST KNOW THAT THE Bcl2 FAMILY PROTEINS (ACTIVE ANTI-APOPTOTIC OR GUARDIANS) BLOCK THE DIMERIZATION OF THE EFFECTORS OR THE PRO-APOPTOTIC EFFECTORS
In the presence of an apoptotic stimulus, BH3-only proteins (e.g., Bid, Bad) are activated and bind to the anti-apoptotic Bcl2 family proteins (e.g., Bcl2, BclXL) so that they can no longer inhibit the effector Bcl2 family proteins ((Bak, Bax); the latter then become activated, aggregate in the outer mitochondrial membrane, and promote the release of intermembrane mitochondrial proteins into the cytosol. Some activated BH3-only proteins may stimulate mitochondrial protein release more directly by binding to and activating the effector Bcl2 family proteins. Although not shown, the antiapoptotic Bcl2 family proteins are bound to the mitochondrial surface.
-Upon an apoptotic stimulus, it activates the BH3-only proteins which include such things as Bad, Bim, Bid, Puma and Noxa.
-Upon activation the BH3-only proteins can activate the apoptotic pathway through 2 mechanisms:
It can bind to and inactive the Bcl2 family protein (anti-apoptotic). These will come in through the BH3 domain and bind to it and inactive it, allowing for the dimerization of the effectors. It can bind to the anti-apoptotic Bcl2 family protein and pull it away from Bax and Bak and allow them to dimerize
It can directly interact and activate Bax and Bak in the mitochondrial membrane.
-Some of these pathways are not fully understood but just keep in mind that there are two pathways in which you can
Describe the role of p53 in apoptotic responses
The activation of p53 triggers apoptosis via upregulation of BH3-only expression. DNA damage signals activate a set of kinases (ATM/ATR and Chk1/Chk2) that phosphorylate p53, leading to its stabilization and activation. The Mdm2 protein normally binds to p53 and promotes its ubiquitylation and destruction in proteasomes. Phosphorylation of p53 blocks its binding to Mdm2, allowing for increased levels of p53 and the stimulation of transcription of numerous genes. Among the targtes are the BH3-only genes Puma and Noxa. The BH3-only proteins then bind to Bcl2, allowing for the activation of the apoptotic pathway.
- Another way in which you can activate this pathway is through the upregulation of p53 to create the apoptotic response.
- You get double stranded break which triggers kinase activation. The kinase then phosphorylates p53.
- p53 is normally held inactive by Mdm2, but upon phosphorylation of p53, it releases the Mdm2 and now get activation of the p53
- p53 actually forms a tetramer
- Once p53 is active, it serves as a transcription factor and it turns up the BH3-only genes.
- p53 activated the BH3-only proteins which then inhibit the Bcl2 proteins leading to the activation of the intrinsic pathway.
Describe the roles of other protein factors released from the mitochondria in addition to cytochrome-c
The mitochondria also releases anti-IAPs such as Hid or Diablo. These anti-IAPs then inhibit and IAP which can then cause apoptosis. Without the anti-IAPs, apoptosis would be inhibited by the IAP
Understand how different survival factors inhibit apoptosis
(A): Increased production of anti-apoptotic Bcl2 family protein
- JUST KNOW THAT SURVIVAL FACTORS CAN ACTIVATE A TRANSCRIPTION FACTOR WHICH LEADS TO THE UPREGULATION OF Bcl2 OR THE ANTI-APOPTOTIC PROTEINS WHICH THEN EFFECTIVELY BLOCK APOPTOSIS
- For example, cancer cells can secrete these survival factors that can upregulate Bcl2 to block apoptosis because they don’t want to kill themselves
(B): Inactivation of the pro-apoptotic BH3-only protein
- THE SURVIVAL FACTOR BINDS TO A RECEPTOR AND THEN CAUSES ITS ACTIVATION. THE ACTIVATED RECEPTOR THEN ACTIVATES A SERIES OF KINASES SUCH AS Akt KINASE HERE.
- Bcl2 can be held inactive by one of the BH3-only proteins, in this case Bad. When Bad is active, it is blocking the function of Bcl2. However, Akt can phosphorylate Bad causing it to release Bcl2 which is now active and can inhibit apoptosis.
(C): Inactivation of anti-IAPs
- A survival factor binds to the receptor, activating it. Then the receptor activates MAP kinase which acts to inactivate the Hid by phosphorylating it. Now Hid can no longer inhibit the IAPs and now apoptosis is blocked.
- In this particular case, it is activated by a MAP Kinase so again using a kinase pathway.
- Hid normally acts to block the inhibitors of apoptosis but when Hid is inhibited it will allow for apoptosis to be blocked
List the different processes that may activate the mitochondrial apoptotic pathway
The intrinsic or mitochondrial pathway can be activated via its own signaling of BH3-only proteins, which are pro-apoptotic proteins that can activate the pro-apoptotic proteins Bak and Bax, causing them to dimerize and release the cytochrome-c which will in turn associate with the Apaf1, exposing a CARD site for 7 of them to bind together and form an apoptosome which will allow it to bind the caspase 9 and activate it. There can also be cross-talk from the extrinsic pathway as well though in which the tBID (a BH3-only protein that is pro-apoptotic) can also activate the Bak and Bax and result in the same effects.
Benign Tumor
A benign glandular tumor (adenoma) remains inside the basal lamina that marks the boundary of the normal structure (e.g., duct)
Malignant or Invasive Tumor
malignant glandular tumor (adenocarcinoma) can develop from a benign tumor cell that degrades the integrity of the tissue and travels from the original site to colonize other tissues (metastasis).
Carcinoma
cancers arising from epithelial cells (most common, ~80%)