Carbs, Nucleic Acids, Lipids (11-13) Flashcards

UMN Biochemistry Midterm 2 Part. 1 (58 cards)

1
Q

The definition of a carbohydrate, what are the basic structural components

A

3-7 carbon chain, with many hydroxyl groups (OH), and one aldehyde or ketone (polyhydroxy aldehyde or ketone)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Carb formula

A

Cn(H2O)n

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Quiz Q: A carbohydrate may be defined as a molecule

A

that is an aldehyde or ketone that has more than one hydroxyl group source

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Monosaccharide

A

Monosaccharide = single sugar, 3-7 C in length

Can form stereoisomers
Can be alpha or beta

Can be cyclic
Can be alpha or beta

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Disaccharide

A

Disaccharide = 2 sugars linked by glycosidic bond

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Polysaccharide

A

Polysaccharide = many sugars (>10) linked together

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Relating to -saccharides: Glycosidic bond

A

hemiacetal and alcohol
Can be alpha or beta
(A hemiacetal is an alcohol and ether ATTACHED TO THE SAME CARBON.)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

ID Aldehyde Functional Group

A

H-C=O

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

ID Ketone Functional Group

A

R-C-H

=O

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

ID isomers of Glucose that we should know for the exam

A

Alpha and Beta D glucose

Can someone lmk what other ones i should be able to ID

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

STARCH- polysaccharides

A

alpha D-glucose and alpha 1,4 link (OH down)
Storage
Forms helical coils / spherical particles

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

GLYCOGEN -polysaccharides

A

Alpha D-glucose and alpha 1,4 link (OH down)
Storage
More highly branched than starch

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

CELLULOSE -polysaccharide

A

Beta D-glucose and B 1,4 link (OH up)
Structural
Forms bundles - intra and interstrand hydrogen bonds
Composed of 1000s of glucose units that that due to the beta linkage can from extensive intrastrand
Interstrand hydrogen bonds

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Stereoisomers

A

Physical properties same
Differ in way they end polarized light
Don’t interact with same binding sites on enzymes/proteins

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

Stereoisomeric forms because of chiral centers - carbon atom bonded to 4 different groups

A

Same chemical formula, different arrangements
Nonsuperimposable mirror images
Configuration about the chiral center furthest from the aldehyde or ketone determines if its in D or L configuration (most in D)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Cyclization

A

Monosaccharides with 5-6 carbons atoms exist in cyclic form - form internal bond between carbonyl group and hydroxyl group (hemiacetal bond)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

The type of bond formed between monosaccharides in disaccharides and polysaccharides, how can they differ? And how can this affect the structure and properties of a polysaccharide

A

Glycosidic bond - hemiacetal + alcohol
Links monosaccharides to form disaccharides or polysaccharides
Can be alpha or beta configuration
Once bond formed, configuration is locked and results in different properties of the products

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

DNA role

A

store genetic info (ATGC)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

DNA

Release genetic info

A

mRNA, TRNA, rRNA

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

DNA Intermediates in metabolism

A

NAD+/NADH - redox coenzymes

ATP - energy storage

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

Signaling molecules DNA

A

cAMP, cGMP

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

Sugar

DNA VS RNA

A

D-ribose (RNA)

2-deoxyribose (DNA) (missing oxygen for carbon #2)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

Bases

DNA VS RNA

A

RNA: Adenine, Uracil, Cytosine, Guanine
DNA: Adenine, Thymine, Cytosine, Guanine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

3 components Nucleotide

A

five carbon sugar, base, phosphate

25
Nucleotides linked by phosphodiester linkages between
free OH (3’) and free phosphate (5’)
26
Nucleic acid is a
polymer of nucleotides
27
double strands running antiparallel, form double helix
DNA
28
_____ bonds between strands - hold bases together (complementary base pairing)
Hydrogen
29
For H bonds in DNA: | DONOR
NH groups
30
For H bonds in DNA: | ACCEPTORS
O or N
31
Alternating sugar and phosphate backbone
DNA
32
DNA strands run
antiparallel (5’ to 3’ and ‘3 to 5’) 5’ has free phosphate group 3’ has free OH group
33
Major and minor grooves formed in double helix - sites for _____
proteins to bind
34
Quiz Q | The backbone of a nucleic acid molecule consists of
alternating sugar and phosphate groups linked by phosphodiester bonds
35
RNA structure
Single stranded
36
RNA Phosphodiester linkages between strands
(3’ OH and 5’ phosphate)
37
Nucleic acids that are intermediates in metabolism
ATP, NAD+/NADH
38
Roles in metabolism: | ATP
energy storage, cleaving phosphate releases energy that can be used to do work
39
Roles in metabolism: | NAD+
electron acceptor, can be reduced to NADH when carbon is oxidized
40
Roles in metabolism: | NADH
stored from of chemical energy, carries electrons, can be oxidized to release energy to make ATP (oxidative phosphorylation)
41
Lipids are hydrophilic/hydrophobic, insoluble/soluble, nonpolar/polar short or long hydrocarbon chains
hydrophobic, insoluble, nonpolar | Long hydrocarbon chains
42
Functions of Lipids (3)
Energy storage Component of cell membranes Signaling molecules
43
Basic fatty acid structure
Long hydrocarbon chains (16-20 carbons longs) with a single carboxylic acid at 1 end
44
Basic fatty acid structure SATURATED
no double bonds (higher melting point, forms solids/fats)
45
Basic fatty acid structure UNSATURATED
1 or more double bonds - creates kink - can be cis or trans (lower melting point, forms liquids/oils)
46
Carboxyl group on lipids
HO-C=O
47
Shorthand notation of a fatty acid given the structure
C(#carbons : #double bonds) | Count from the carboxylic acid
48
Triglyceride structural components (how structure effects the properties of a triglyceride. Is it an oil or a fat?)
Triglyceride = glycerol backbone (CH2OH) and 3 fatty acid tails (can be different) Saturated fatty acids - forms solid/fat, has higher melting point Unsaturated fatty acid tails - forms liquid/oil, lower melting point
49
Phospholipid structural components
Phospholipids have a glycerol or sphingomyelin backbone with 2 fatty acids and a phosphate and polar head group esterified to it
50
Phospholipid role in membranes
Important components of cell membranes because of amphipathic properties - hydrophilic heads and hydrophobic tails No unsaturated fatty acids - tight, lower permeability and fluidity Many unsaturated fatty acids - kinked cause not to fit together tightly, higher permeability and fluidity
51
Glycolipids: what is their function in a membrane
Glycolipids are cell signaling molecules on the the membrane | They have a sphingosine backbone
52
Glycolipids: how define ABO blood group
Variable sugar groups serve as recognition sites on the surface of cells - example ABO blood groups have different sugars
53
DO KAHN VID ON
ABO blood group and glycolipids
54
General structure of sterols
Steroid nucleus - 3 6-carbon rings and 1 5-carbon ring Rigid and planar structure
55
Importance of Cholesterol in membranes and as a precursor to other molecules
Cholesterol is the most common sterol Important lipid component of animal membranes Steroid nucleus with hydrocarbon chain Nonpolar/hydrophobic but has single OH group Inserts into bilayer and increases rigidity Serves as precursor for steroid hormones (signaling molecules) and bile acid
56
Alpha has OH ____ configuration
down
57
Alpha D glucose and B D glucose are ____ stereoisomers
cyclic
58
Beta has OH ____ configuration
up