Cell Signalling and Pharmacology Flashcards
(41 cards)
describe the methods of intercellular communication
can travel short or long distances
primary messengers
paracrine - close proximity, limited travel (GH, histamine, NO)
autocrine - sender and target cell are the same (some growth factors)
endocrine - acts generally on distant cells but can act on nearby (hormones, insulin etc)
synaptic - axon of neurone transmits elec signal over long distances, causes release of neurotransmitter (ACh or GABA), short distances to specific target cell
juxtacrine - signalling cell in direct contact to target cell
describe the effect of pharmacological manipulations on cellular function
describe the basic principles of intracellular cell signalling
secondary messengers
this can include altered protein function for altered cytoplasmic machinery for altered cell behaviour, or altered protein synthesis for altered cell behaviour
remember: the same signal can induce different responses in different target cells by having isoforms or variants of the same receptor, and similar receptors use different intracellular signal transduction pathways
explain the role of signal transduction cascades
integrate and distribute signals coming from other signal transduction pathways
scaffold proteins allow for some signalling components to be activated more efficiently
what is cell signalling, and what is the point of a signal transduction cascade?
detect receive info
process info
respond to info
allows specialist functions and co-ordination with other cells
amplify the original signal
a common alteration in shape change is induced by…
molecules simply binding with each other
addition/removal of a phosphate to the molecule
molecule binds to a phosphate on another molecule
name the three effector proteins impacted by intracellular signalling molecules or by an extracellular signalling molecule
metabolic enzyme - altered metabolism
cytoskeletal protein - altered shape or movement
transcription regulator - altered gene expression
discuss the varied types of molecules that comprise intracellular signalling molecules
two main classes:
binding to guanine nucleotides - GTP and GDP
phosphorylation
explain the role of signal molecules as molecular switches with focus on the ‘switch’ in activity being induced by phosphorylation or binding to GTP
G proteins are used
inactive when bound to GDP and active when bound to GTP
intrinsic activity:
hydrolysis of GTP to GDP will switch off the protein
has two forms:
- trimeric complex
- single monomeric protein
single monomeric protein:
to activate or inactivate it requires GEFs for GDP/GTP exchange and GAPs to aid in ATP hydrolysis
key members include Ras for cell division and growth, Rab for membrane transport and vesicular transport and Rac and Rho for cytoskeletal organisation and migration
overview some key intracellular signalling sequences
adenylyl cyclase produces cAMP to activate PKA
PI3-kinase produces PIP2 to PIP3 to activate PDK1 and PKB (Akt)
Phospholipase C to produce PIP2 ro DAG and IP3 to produce Ca2+ and then produce Calmodulin
all these produce specific molecules for specific responses
explain the role of cAMP in signal transduction cascades
produced from ATP by adenylyl cyclase
adenylyl cyclase has two transmembrane domains joined by a catalytic intracellular domain
cAMP is degraded from cyclic nucleotide to a 5’ monophosphate (AMP) by a cAMP phosphodiesterase (this controls signalling)
responses mediated by cAMP-dependent protein kinase A (PKA), when the inactive form has cAMP bind, the molecule dissociates and results in two monomeric kinase units that can bind and phosphorylate target proteins
phosphorylation
undertaken by protein kinases
add phosphate from ATP to specific AA on target protein
tyrosine kinases
serine/threonine kinases (STKs)
covalent modification reversed by protein phosphates
explain the role of the phospholipid PIP2 in mediating different major signalling pathways
PIP2 is a cell membrane phospholipid found in inner leaflet of lipid bilayer
phosphorylation
PDK1 becomes activated and causes the phosphorylation of PIP2 to PIP3 then PKB becomes activated by phosphorylation too
breakdown of PIP2 in the lipid bilayer by phospholipase C (PLC):
activation of a receptor causes activation of phospholipase C which cleaves PIP2 into DAG and IP3
DAG activates PKC (important for growth)
IP3 triggers release of Ca2+
describe how Ca2+ acts as a signalling molecule
Ca2+ levels increase by:
influx o Ca2+ from outside the cell via channel proteins in the plasma membrane
release of Ca2+ from intracellular stores (ER), SR and mitochondria (caused mainly via IP3)
Ca2+ leveld reduced or controlled by ATPase pumps in:
the plasma membrane (pump out)
ER, SR and mitochondrial membrane (sequester Ca2+ back into organelle
explain the role of calmodulin in transducing Ca2+ mediated signalling
structure and function:
has four Ca2+ binding sites
activated whenCa2+ increases above 500nM
Ca2+ bound calmodulin binds and activity of its target proteins
summarise the general mechanisms of signal termination
eliminate extracellular signalling molecule by enzyme degradation
deactivate signal transduction molecules by dephosphorylation by phosphatases or degradation by enzymes
remove activated receptor from cell membrane by endocytosis
receptor and signal molecule are internalised:
either the receptor and signalling molecule are separated and the receptor is recycled to surface and ligand destroyed or the receptor and ligand are both destroyed
overview the role of receptors in cell signalling
binding to a specific receptor such a the lock and key hypothesis
the cell can also influence response by regulating the number of receptors and synthesising different isoforms of the receptor
agonist and antagonists!
highlight the different classes of cell surface receptor
ion channel-linked receptor (ionotropic) - acts as gates, ligand gated, passive flow, modified pharmacologically by channel blockers and channel modulators
GPCR (metabotropic) - bind extracellular signalling molecules, extracellular ligand binding region, seven alpha helices, intracellular portion interacts with a trimeric G protein - inactive when bound to GDP and active when bound to GTP
enzyme-linked receptor - intrinsic enzyme activity, recruit enzyme from cytoplasm
phosphoinositide comprised of
hydrophobic diacylglycerol (DAG) lipid tail
hydrophilic inositol sugar as head group (inositol triphosphate (IP3)
GPCR trimeric to relay a signal
alpha, beta and gamma subunit
biding of ligand causes conformational change
G alpha binds to receptor
allows release of GDP and its exchange for GTP
alpha subunit is active and dissociates from the beta gamma units
both active gamma alpha subunit and betagamma complex can now interact with effector molecules to relay the signal
GTP bound activated Galpha unit binds to effector molecule to alter activity
switching off:
Galpha subunit hydrolyses GTP to GDP and can use RGS protein to aid hydrolysis (in seconds)
G alpha dissociates from effector molecule
alpha subunit having returned from its original GDP inactive conformation can reassemble with betagamma complex to from inactive trimeric G protein
classes of trimeric G proteins and their effector molecule
Galpha s - effector is adenylyl cyclase and stimulation causes increase in cAMP
G alpha i - effector is adenylyl cyclase and inhibition causes decrease in cAMP
G alpha q - effector is phospholipase c and stimulation causes an increase in DAG and IP3
example GPCR signalling pathway
adrenaline mediated breakdown of glycogen
rapid response in seconds
signalling pathway amplifies the original signal
PKA can also enter the nucleus and effect transcription factors involved in mediating the longer term coordinated events in this biological response
adrenaline binds, GPCR becomes activated, activated alpha subunit Gs from bound GTP causing conversion of ATP to cAMP which activates PKA and causes inactive phosphorylase kinase to be activated to cause ATP conversion to ADP which activates glycogen phosphorylase by phosphorylating it and causing glycogen breakdown
example of dysregulated G protein signalling
cholera toxin binds to Galpha s and fixes it in GTP bound conformation
over stimulation of adenylyl cyclase and cAMP production
downstream signalling effects transporters involved in ion transport leading to water loss due to Na+ cant move into the cell by Cl- can move out of the cell
RTKs
extracellular domain which binds the ligan (mainly growth factors)
transmembrane domain
intracellular or cytoplasmic domain which contain the tyrosine kinase site
tyrosine kinase adds phosphate groups from ATP to only tyrosine residues on target proteins