Cell Signalling and Pharmacology Flashcards

(41 cards)

1
Q

describe the methods of intercellular communication

A

can travel short or long distances
primary messengers
paracrine - close proximity, limited travel (GH, histamine, NO)
autocrine - sender and target cell are the same (some growth factors)
endocrine - acts generally on distant cells but can act on nearby (hormones, insulin etc)
synaptic - axon of neurone transmits elec signal over long distances, causes release of neurotransmitter (ACh or GABA), short distances to specific target cell
juxtacrine - signalling cell in direct contact to target cell

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2
Q

describe the effect of pharmacological manipulations on cellular function

A
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3
Q

describe the basic principles of intracellular cell signalling

A

secondary messengers
this can include altered protein function for altered cytoplasmic machinery for altered cell behaviour, or altered protein synthesis for altered cell behaviour

remember: the same signal can induce different responses in different target cells by having isoforms or variants of the same receptor, and similar receptors use different intracellular signal transduction pathways

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4
Q

explain the role of signal transduction cascades

A

integrate and distribute signals coming from other signal transduction pathways
scaffold proteins allow for some signalling components to be activated more efficiently

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5
Q

what is cell signalling, and what is the point of a signal transduction cascade?

A

detect receive info
process info
respond to info
allows specialist functions and co-ordination with other cells

amplify the original signal

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6
Q

a common alteration in shape change is induced by…

A

molecules simply binding with each other
addition/removal of a phosphate to the molecule
molecule binds to a phosphate on another molecule

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7
Q

name the three effector proteins impacted by intracellular signalling molecules or by an extracellular signalling molecule

A

metabolic enzyme - altered metabolism
cytoskeletal protein - altered shape or movement
transcription regulator - altered gene expression

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8
Q

discuss the varied types of molecules that comprise intracellular signalling molecules

A

two main classes:
binding to guanine nucleotides - GTP and GDP
phosphorylation

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9
Q

explain the role of signal molecules as molecular switches with focus on the ‘switch’ in activity being induced by phosphorylation or binding to GTP

A

G proteins are used
inactive when bound to GDP and active when bound to GTP
intrinsic activity:
hydrolysis of GTP to GDP will switch off the protein
has two forms:
- trimeric complex
- single monomeric protein

single monomeric protein:
to activate or inactivate it requires GEFs for GDP/GTP exchange and GAPs to aid in ATP hydrolysis
key members include Ras for cell division and growth, Rab for membrane transport and vesicular transport and Rac and Rho for cytoskeletal organisation and migration

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10
Q

overview some key intracellular signalling sequences

A

adenylyl cyclase produces cAMP to activate PKA

PI3-kinase produces PIP2 to PIP3 to activate PDK1 and PKB (Akt)

Phospholipase C to produce PIP2 ro DAG and IP3 to produce Ca2+ and then produce Calmodulin

all these produce specific molecules for specific responses

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11
Q

explain the role of cAMP in signal transduction cascades

A

produced from ATP by adenylyl cyclase
adenylyl cyclase has two transmembrane domains joined by a catalytic intracellular domain
cAMP is degraded from cyclic nucleotide to a 5’ monophosphate (AMP) by a cAMP phosphodiesterase (this controls signalling)
responses mediated by cAMP-dependent protein kinase A (PKA), when the inactive form has cAMP bind, the molecule dissociates and results in two monomeric kinase units that can bind and phosphorylate target proteins

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12
Q

phosphorylation

A

undertaken by protein kinases
add phosphate from ATP to specific AA on target protein
tyrosine kinases
serine/threonine kinases (STKs)
covalent modification reversed by protein phosphates

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13
Q

explain the role of the phospholipid PIP2 in mediating different major signalling pathways

A

PIP2 is a cell membrane phospholipid found in inner leaflet of lipid bilayer
phosphorylation
PDK1 becomes activated and causes the phosphorylation of PIP2 to PIP3 then PKB becomes activated by phosphorylation too

breakdown of PIP2 in the lipid bilayer by phospholipase C (PLC):
activation of a receptor causes activation of phospholipase C which cleaves PIP2 into DAG and IP3
DAG activates PKC (important for growth)
IP3 triggers release of Ca2+

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14
Q

describe how Ca2+ acts as a signalling molecule

A

Ca2+ levels increase by:
influx o Ca2+ from outside the cell via channel proteins in the plasma membrane
release of Ca2+ from intracellular stores (ER), SR and mitochondria (caused mainly via IP3)

Ca2+ leveld reduced or controlled by ATPase pumps in:
the plasma membrane (pump out)
ER, SR and mitochondrial membrane (sequester Ca2+ back into organelle

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15
Q

explain the role of calmodulin in transducing Ca2+ mediated signalling

A

structure and function:
has four Ca2+ binding sites
activated whenCa2+ increases above 500nM
Ca2+ bound calmodulin binds and activity of its target proteins

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16
Q

summarise the general mechanisms of signal termination

A

eliminate extracellular signalling molecule by enzyme degradation
deactivate signal transduction molecules by dephosphorylation by phosphatases or degradation by enzymes
remove activated receptor from cell membrane by endocytosis
receptor and signal molecule are internalised:
either the receptor and signalling molecule are separated and the receptor is recycled to surface and ligand destroyed or the receptor and ligand are both destroyed

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17
Q

overview the role of receptors in cell signalling

A

binding to a specific receptor such a the lock and key hypothesis
the cell can also influence response by regulating the number of receptors and synthesising different isoforms of the receptor
agonist and antagonists!

18
Q

highlight the different classes of cell surface receptor

A

ion channel-linked receptor (ionotropic) - acts as gates, ligand gated, passive flow, modified pharmacologically by channel blockers and channel modulators
GPCR (metabotropic) - bind extracellular signalling molecules, extracellular ligand binding region, seven alpha helices, intracellular portion interacts with a trimeric G protein - inactive when bound to GDP and active when bound to GTP
enzyme-linked receptor - intrinsic enzyme activity, recruit enzyme from cytoplasm

19
Q

phosphoinositide comprised of

A

hydrophobic diacylglycerol (DAG) lipid tail
hydrophilic inositol sugar as head group (inositol triphosphate (IP3)

20
Q

GPCR trimeric to relay a signal

A

alpha, beta and gamma subunit
biding of ligand causes conformational change
G alpha binds to receptor
allows release of GDP and its exchange for GTP
alpha subunit is active and dissociates from the beta gamma units
both active gamma alpha subunit and betagamma complex can now interact with effector molecules to relay the signal
GTP bound activated Galpha unit binds to effector molecule to alter activity
switching off:
Galpha subunit hydrolyses GTP to GDP and can use RGS protein to aid hydrolysis (in seconds)
G alpha dissociates from effector molecule
alpha subunit having returned from its original GDP inactive conformation can reassemble with betagamma complex to from inactive trimeric G protein

21
Q

classes of trimeric G proteins and their effector molecule

A

Galpha s - effector is adenylyl cyclase and stimulation causes increase in cAMP
G alpha i - effector is adenylyl cyclase and inhibition causes decrease in cAMP
G alpha q - effector is phospholipase c and stimulation causes an increase in DAG and IP3

22
Q

example GPCR signalling pathway

A

adrenaline mediated breakdown of glycogen
rapid response in seconds
signalling pathway amplifies the original signal
PKA can also enter the nucleus and effect transcription factors involved in mediating the longer term coordinated events in this biological response

adrenaline binds, GPCR becomes activated, activated alpha subunit Gs from bound GTP causing conversion of ATP to cAMP which activates PKA and causes inactive phosphorylase kinase to be activated to cause ATP conversion to ADP which activates glycogen phosphorylase by phosphorylating it and causing glycogen breakdown

23
Q

example of dysregulated G protein signalling

A

cholera toxin binds to Galpha s and fixes it in GTP bound conformation
over stimulation of adenylyl cyclase and cAMP production
downstream signalling effects transporters involved in ion transport leading to water loss due to Na+ cant move into the cell by Cl- can move out of the cell

24
Q

RTKs

A

extracellular domain which binds the ligan (mainly growth factors)
transmembrane domain
intracellular or cytoplasmic domain which contain the tyrosine kinase site
tyrosine kinase adds phosphate groups from ATP to only tyrosine residues on target proteins

25
activation of a RTK
requires dimerization activates tyrosine kinase kinase phosphorylates on the opposite receptor tail (transphosphorylation) recruitment and binding of adaptor or effector signalling molecules directly to the phosphorylated tyrosine to initiate signalling
26
what do RTKs commonly use to relay or transduce the signal
the monomeric G protein Ras
27
regulation of glucose uptake in muscle and fat cells via activation of insulin receptor
glucose transporters GLUT4 stored in cytoplasmic vesicles insulin induced IRS-1 PI-3 kinase/PKB signalling triggers vesicle translocation to the plasma membrane vesicle fuses with membrane where they take up glucose and pass it into the cell
28
cytokine receptors MOA
cytokine receptors lack intrinsic activity recruit soluble tyrosine kinase (JAK) ligand binding prolactin causes: receptor dimerization and JAK recruitment and activation JAKs phosphorylate each other and the receptor recruitment of STAT transcription factor to phosphorylated tyrosine residues on the receptor
29
discuss intracellular receptors/nuclear receptors
absence of ligand - found in nucleus presence of ligand - cytoplasmic receptors translocate to the nucleus bind to lipid soluble molecules (steroid hormones) that can pass the lipid bilayer because they are small exert effects by affecting gene transcription structure: ligand binding domain DNA binding domain - to bind to response elements in the promoter region of target genes N terminal region which can be modified by other molecules to enhance transcriptional abilities
30
describe some of the key hormones and the MOA used by plants to effect biological functions
auxins - natural indoleacetic acid (IAA), produced in seed embryo, meristems of apical buds and young leaves, stem elongation, root growth and branching, apical dominance, AT from one cell to the next - long distance and local acting - shoot bends to light auxin binds to nuclear receptor which are ubiquitin ligases, binding promotes ubiquitinylation and degradation of repressor protein, suppression of gene transcription is relieved ethylene - fruit ripening, leaf abscission, pass through cell walls or diffuse through air, ethylene receptors are found in the golgi and ER, absence of ethylene, the ethylene receptor is activating a kinase promoting the destruction of the transcription regulator, deactivation of the ethylene receptor allows the transcription of ethylene sensitive genes
31
demonstrate the similarities between plant and animal signal transduction
extracellular communication in plants is designated by the distance travelled by the signalling molecule to reach its target cell (the signalling pathways are the same too) AT via transport proteins passive process
32
demonstrate the differences between plant and animal signalling
rely on removing transcriptional repression to allow gene transcription
33
plant cellular pathways
endocrine system via vascular system which is long distance and slow paracrine system is most common same cell is autocrine juxtacrine is via the plasmodesmata
34
phytochromes
red light and far red light intracellular receptor two subunits - light detecting pigment or chromophore, region that has kinase activity, exists between two states Pr and Pfr depending on the proportions of red light and far-red light Pfr can modulate gene transcription, translocating to the nucleus either directly binding to and activating a transcription factor or indirectly by phosphorylating transcription factors
35
what are the two main classes of photoreceptor?
blue light - cell surface receptor phytochromes 9 red and far red light which are intracellular receptors
36
describe the role of apoptosis or controlled cell suicide in biological processes
essential for animal development maintains homeostasis in organisms elimination of specific cells that are damaged beyond repair - DNA damage, accumulation of misfolded proteins, cells infected by certain viral agents
37
describe the morphological features of apoptotic cells
note: these changes are irreversible once apoptosis is triggered cell shrinkage chromatin condenses fragmentation of intracellular contents and membrane blebbing formation of apoptotic bodies (membrane bound portions of cytoplasm and organelles) phagocytic ingestion of Abs and degradation
38
detail the role of caspases in apoptosis and explain how their action executes the demolition of cellular contents
cysteine at active site cleaves target proteins at specific aspartic acids synthesised as inactive procaspase activated by proteolytic cleavage at own aspartic residues initiator caspases: undergo autocleavage activates other caspases effector caspases: activate other effector caspases after cleavage by initiator caspase cleave cellular proteins nuclear effects seen during apoptosis: hallmark cleavage of chromosomal DNA caspase cleaves a protein that normally blocks endonuclease action: - DNA cleavage by endonucleases cuts DNA into internucleosomal units 180-200bp - apoptotic cells show DNA laddering on electrophoresis
39
describe the molecular basis of apoptosis via its two routes of initiation
intrinsic pathway: lack of trophic factor induced signalling (growth factor or survival factor withdrawal), cells are prevented from dying by trophic factors, DNA damage by radiation or toxins, protein misfolding (ER stress) survival factor or growth factor signalling suppresses apoptosis by: increasing the transcription and translation of anti-apoptotic molecules signal transduction kinases which are activated by stimulation of trophic receptors, phosphorylate and inactivate pro-apoptotic molecules extrinsic pathway: used by cells of the immune system to kill their targets (cancer cells or pathogen infected cells) initiated by death ligands on/or secreted by the immune cells, binding to their receptors on the target cell activated death receptors result in caspase cascade - different initiator caspases used compared with intrinsic route (procaspase 8 in extrinsic route)
40
what is used to signal engulfing?
phosphotidylserine (PS) found in inner leaflet of PM some molecules will move to outer leaflet in apoptosis action of caspases activate scramblase (Xkr8) which mediates PS flipping
41
examples of molecules which regulate apoptosis
pro-apoptotic molecules: BAX - both BAX and BAK promote apoptosis by forming channels in the outer mitochondrial membrane to allow cytochrome c release BAK BAD anti-apoptotic molecules: BCL-2 - prevents release of cytochrome c from the mitochondria by blocking action of BAX and BAK BCLXL