CH3: BIOCHEM Basics Flashcards

(53 cards)

1
Q

First Law of Thermodynamics (AKA Law of Conservation of Energy)

A

The energy of the universe is constant

SO when E of a system DECR –> E of universe/surroundings INCR

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2
Q

Second Law of Thermodynamics

A

Entropy (AKA disorder) of the universe increases

Entropy symbol = S

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3
Q

Gibbs Free Energy

A

DELTA G = DELTA H -T DELTA S

H= enthalpy (potential E)
S= entropy
T= temperature in K

T and S = kinetic E

DELTA G <0 FAVORABLE

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4
Q

Enthalpy

A

Internal energy contained in a compound

DELTA H= DELTA E + P DELTA V

H= enthalpy
E= bond energy
P= pressure
V= volume

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5
Q

Spontaneous

A

Favorable

DELTA G <0

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6
Q

Nonspontaneous

A

UNfavorable

DELTA G >0

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7
Q

Exergonic

A

Energy OUT

Negative DELTA G

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8
Q

Endergonic

A

Energy IN

Positive DELTA G

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9
Q

Exothermic

A

Heat OUT

Negative DELTA H

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10
Q

Endothermic

A

Heat IN

Positive DELTA H

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11
Q

Equilibrium

A

Reaction rate forward = Reaction rate reverse

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12
Q

Q

A

Ratio products to reactants

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13
Q

K eq

A

ratio products to reactants AT EQUILIBRIUM

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14
Q

You’re studying a particular reaction. You find the reaction in a book and read DELTA G*’ from a table. Can you calculate DELTA G for this reaction in a living human being without any more info?

A

NO
Need to know concentrations of products and reactants

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15
Q

How can DELTA G be negative is DELTA G*’ is positive?

A

if RT ln Q more negative than DELTA G*’ is positive

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16
Q

Does K eq indicate the rate at which a reaction

A

No
Only the concentrations of at equilibrium

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17
Q

When K eq is large which has lower free energy: products or reactants

A

Products
More products = less free energy

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18
Q

When Q is large which has lower free energy

A

unknown
Only derived from initial concentrations

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19
Q

Which direction forward or backward will be favored in a reaction if DELTA G= 0

A

NEITHER
Reached equilibrium

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20
Q

Chemical kinetics

A

Study of reaction rates

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21
Q

Transition state (TS)

A

Unstable and takes a lot of energy to make

Only around for a short time to form products or break down into reactants

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22
Q

Activation Enegy (Ea)

A

Energy needed to make the transition state

Can be “reaction barrier” even with NEG DELTA G

23
Q

Catalyst

A

INCR Ea by:
1. Lowers Ea of a reaction wo changing the DELTA G
2. Stabilizes the transition state so its LESS thermodynamically Unfavorable

NOT consumed in the reaction

DOESN”t change thermodynamics ONLY kinetics

24
Q

Enzymes

A

Biological catalysts

INCREASE reaction rate by DECREASING activation energy

DO NOT affect DELTA G

Kinetic role NOT thermodynamic role

NOT used up in rxn

specific for certain rxns

25
Photosynthesis
Plants store light energy in bond energy of carbohydrates
26
Photoautotrophs
Use light energy to make their own food
27
Chemoheterotrophs
Use energy of chemicals made by other organisms
28
Oxidation
Loss of electrons
29
Reduction
Gain electrons
30
Oxidation Reactions
1. Gain O atoms 2. Lose H atoms 3. Lose electrons
31
Reduction Reactions
1. Lose O atoms 2. Gain H atoms 3. Gain electrons
32
Redox pair
When one atoms gets reduced another MUST be oxidized
33
Catabolism
Break down molecules
34
Anabolism
Building up molecules
35
Oxidative Catabolism
Extracts energy from glucose Glucose gets oxidized AND oxygen reduced
36
BL Acids ## Footnote MOST IMP FOR MCAT
Proton (H+) donors
37
BL Bases ## Footnote MOST IMP FOR MCAT
Proton (H+) acceptors
38
Lewis Acids
Electron-pair acceptors
39
Lewis Bases
Electron-pair donors
40
BL Conjugate Acid
Has extra H+ than base
41
BL Conjugate base
Missing H+
42
Acid-ionization (or acid-dissociation) constant | Ka
Equilibrium expression for acid LARGER Ka = STRONGER acid SMALLER Ka = WEAKER acid
43
Base-ionization (or base-dissociation) constant | Kb
Equil expression for a base LARGER Kb = STRONGER base SMALLER Kb = WEAKER base
44
Polyprotic
Has more than 1 proton to donate EX: carbonic acid
45
Amphoteric
A substance that can be either an acid or a base Any conjugate base of a weak polyprotic acid is ALWAYS amphoteric Includes amino acids
46
pH =
-log[H+] [H+] = 10^-pH
47
LOW pH equals
HIGH [H+]
48
HIGH pH equals
LOW [H+]
49
pOH =
-log[OH-]
50
pKa=
-logKa
51
pKb=
-log Kb
52
The acid with the LOWER pKa is...
the STRONGER acid
53
The base with the LOWER pKb is...
the STRONGER base