Chapter 1: The Cell Flashcards
(215 cards)
1
Q
What is Robert Hooke known for? (c. 1665)
A
Assembling the first crude compound microscope and looking at cork
2
Q
What is Anton van Leeuwenhoek known for? (c. 1674)
A
First to view a living cell under a microscope
3
Q
What is Rudolph Virchow known for? (c. 1850)
A
Demonstrating that diseased cells could arise from normal cells in normal tissues
4
Q
What are the three basic tenets of cell theory?
- All living things are composed of ____.
- The cell is the basic ____________ ______ of life.
- Cells arise only from ____________ ______.
high yield
A
- All living things are composed of cells
- The cell is the basic functional unit of life
- Cells arise only from preexisting cells
5
Q
What is the 4th newly added tenet of cell theory?
high yield
A
- Cells carry genetic info in the form of DNA, which is passed on from parent to daughter cell
6
Q
What are viruses? Are they alive?
A
Viruses are small structures that contain genetic material but cannot reproduce on their own.
This violates the 3rd and 4th tenet because they can only replicate by invading other organisms and because they can use RNA as their genetic info.
They are not considered alive.
7
Q
Prokaryotic Organism - how many cells?
A
Always single-celled
8
Q
Eukaryotic organism - how many cells?
A
Unicellular OR multicellular
9
Q
Eukaryotic Cells have a _____ nucleus.
A
Contain a true nucleus enclosed in a membrane
10
Q
Prokaryotic Cells- has nucleus?
A
do NOT contain a nucleus
11
Q
What type of cells are organelles found in?
A
Only in eukaryotic cells, not prokaryotic
12
Q
What surrounds cells and what is inside cells?
A
Cells are surrounded by a membrane that has a phospholipid bilayer.
Inside the cell is cytosol (liquid that fills the cell), and cytosol + organelles = cytoplasm
Organelles are surrounded by their own membrane
13
Q
What is the phospholipid bilayer?
A
A thin polar membrane made of two layers of lipid molecules
Its surfaces are hydrophilic and interact with the aqueous environments
Inner portion of the bilayer is hydrophobic; allows it to be highly selective
14
Q
How do eukaryotic cells reproduce?
A
By mitosis
15
Q
What is the nucleus surrounded by?
A
A nuclear envelope/membrane (double membrane) that has nuclear pores (for selective 2-way exchange)
16
Q
What are histones?
A
organizing proteins (have a lot of lysine and arginine residues) that are found in eukaryotic cell nuclei.
They act as spools around which DNA winds to create structural units called nucleosomes
17
Q
What is a nucleosome and what is its structure?
A
Basic structural unit of DNA packaging in eukaryotes
The structure of a nucleosome consists of a segment of DNA wound around 8 histone proteins (octamer) and is like thread wrapped around a spool
18
Q
What is chromatin and what is it made up of?
A
Chromatin is made up of DNA and associated proteins (histones)
19
Q
What are chromosomes and what are they made up of?
A
Long DNA molecule with part or all of the genetic material of an organism
Composed of condensed chromatin fibers
20
Q
Where in the cell is DNA located?
A
In the nucleus
21
Q
What is the nucleolus and what does it do?
A
A subsection of the nucleus, where ribosomal RNA (rRNA) is synthesized. Takes up 25% of the nucleus’ volume (looks like a darker spot in the nucleus)
22
Q
How many layers does the mitochondrion have?
A
2; inner and outer layers
23
Q
What is the function of the outer membrane of the mitochondrion?
A
barrier between cytosol and inner environment of mitochondrion
24
Q
What is the function of the outer membrane of the mitochondrion?
A
It contains the molecules/enzymes of the electron transport chain
25
What is the structure of the mitochondrion's inner membrane like?
It has numerous infoldings called **cristae**, which are highly convoluted so as to increase surface area available for electron transport chain enzymes
26
What is the space between the inner and outer membranes of the mitochondrion called?
Intermembrane space
27
What is the space inside the mitochondrion's inner membrane called?
Mitochondrial matrix
28
What is the proton pump of the mitochondria?
The pumping of protons from the mitochondrial matrix to the intermembrane space establishes the proton-motive force.
These protons flow through **ATP synthase** to generate ATP during **oxidative phosphorylation**
29
What is extranuclear inheritance and what is an example of it?
The transmission of genetic material independent of the nucleus.
Example: the mitochondria are semi-autonomous, as they contain some of their own genes and replicate independently of the nucleus via **binary fission**
They are thought to have originated when an anaerobic prokaryote engulfed an aerobic prokaryote, establishing a symbiotic relationship
30
What role do mitochondria play in apoptosis?
They release enzymes from the electron transport chain that kickstarts the process of apoptosis
31
What are **lysosomes**?
What type of enzymes do they have?
What do those enzymes do?
membrane-bound structures that contain **hydrolytic** enzymes that **breakdown** many different substrates, e.g. substances ingested by endocytosis and cellular waste products
32
What are endosomes?
Intracellular sorting organelles that transport, package, and sort cell material traveling to/from membrane
33
Where do endosomes transport materials?
To the *trans*-golgi, the cell membrane, or lysosomal pathway for degradation
34
What is autolysis?
When lysosomal enzymes are released, resulting in apoptosis, which leads directly to the degradation of cellular components
35
What is the endoplasmic reticulum?
What is its membrane like?
A series of interconnected membranes that are contiguous with the nuclear envelope.
Its membrane is folded into numerous invaginations, which creates complex structures with a central lumen
36
What are the two types of ER?
Smooth and Rough ER
37
What is the difference between smooth and rough ER?
Rough ER has ribosomes, smooth ER does not
38
What is the function of the rough ER (and its ribosomes)?
They permit **translation of proteins** directly into its lumen. These proteins are destined for **secretion**.
39
What are the 3 main functions of the smooth ER?
It lacks ribosomes, but is used primarily for **lipid synthesis**, e.g. phospholipids in the cell membrane, **detoxification** of certain drugs and poisons, and **transportation** of proteins
40
The smooth ER transports proteins from the ______ to the ______ __________.
The smooth ER transports proteins from the _RER_ to the _Golgi apparatus_.
41
What is the structure of the Golgi apparatus?
It is composed of stacked membrane-bound sacs
42
How are materials transferred from the RER to the Golgi appartus?
They are transferred in **vesicles**
43
What happens inside the Golgi apparatus?
Cellular modification can occur
44
What happens inside the Golgi apparatus?
Cellular modification can occur
45
What are two ways that the Golgi appartus can modify cellular products?
1. Adding groups like carbohydrates, phosphates, and sulfates
2. Introducing signal sequences to direct the delivery of the product to a specific cellular location
46
What happens after the Golgi apparatus modifies and sorts cellular products?
The cellular products are repackaged in vesicles, which are then directed to the correct cellular location.
47
What happens to products coming from the Golgi apparatus that are destined for secretion?
The secretory vesicles merge with the cell membrane, and its contents are released via **exocytosis**
48
# Draw
The relationship between lysosomes, ER, and Golgi apparatus
49
What are peroxisomes? What are their 2 main roles?
They contain hydrogen peroxide and:
1. Breakdown very long chain **fatty acids**
2. **Synthesize phospholipids** and contain some of the enzymes involved in the **pentose phosphate pathway**
50
By what process do peroxisomes breakdown fatty acids?
β-oxidation
51
What is the cytoskeleton? What are its main functions?
Provides structure to the cell and helps it maintain its shape.
Also provides a conduit for transportin materials around the cell.
52
What are 3 components of the cytoskeleton?
1. microfilaments
2. microtubules
3. intermediate filaments
53
What are microfilaments?
A type of cytoskeleton; a small rodlike structure, about 4–7 nanometers in diameter, present in numbers in the cytoplasm of many eukaryotic cells.
54
Microfilaments are made up of solid polymerized rods of ______.
Actin
55
How are actin filaments organized in cytoskeleton?
The actin filaments are organized into bundles and networks and are resistant to both compression and fracture; provides protection for cell
56
How does actin effect movement?
They use ATP to generate force for movement by interacting with myosin, e.g. muscle contraction
57
What is cytokinesis?
The division of materials between daughter cells; microfilaments play a role in cytokinesis.
58
What is the role of microfilaments in mitosis?
Microfilaments form the **cleavage furrow** during mitosis, which organize as a ring at the site of division between the 2 new daughter cells.
The actin filaments within the ring contract, make the ring smaller, which eventually pinches off the connection between the 2 daughter cells
59
What are microtubules?
A type of cytoskeleton; hollow, rigid polymers, approximately 25 nm in diameter
60
Microtubules are made up of hollow polymers of ______ proteins.
Tubulin
61
Microtubules form the primary pathways along which motor proteins like ______ and ______ carry vesicles.
Kinesin and dynein
62
Microtubules also comprise ______ and ______, which are motile structures on the surface of the cell.
Cilia and flagella
63
What are cilia and what is their function?
Cilia are projections from a cell made of **microtubules** and are involved in the **movement of materials** along the surface of the cell.
64
What are flagella and what is their function?
Flagella are structures made of **microtubules** and are involved in the **movement of the cell itself**
65
What is the structure of cilia and flagella in *eukaryotic organelles*
**9 + 2 structure**
9 pairs of microtubules forming an outer ring, with 2 microtubules in the center
66
What is a centrosome?
an organelle *near the nucleus* of a cell which **contains the centrioles** (in animal cells) and **from which the spindle fibers** develop in cell division.
67
What are centrioles and what is their structure?
The **organizing centers** for microtubules and are structures as **nine triplets** of microtubules with a hollow center
68
What do centrioles do during mitosis?
First, they migrate to ________ ______ of the dividing cell and organize the __________ ________.
Then, the microtubules that emanate from the centrioles attach to the ______________ via complexes called ______________ and exert force on the ________ ____________, pulling them apart.
First, they **migrate** to *opposite poles* of the dividing cell and **organize** the *mitotic spindle*
Then, the microtubules that emanate from the centrioles attach to the _chromosomes_ via complexes called _kinetochores_ and exert force on the _sister chromatids_, pulling them apart.
69
What are intermediate filaments and what are their function?
A type of cytoskeleton; a diverse group of filamentous proteins, e.g. keratin, desmin, lamins, etc.
They are primarily involved in **cell-cell adhesion** or maintenance of **cytoskeleton integrity**
70
What are 2 reasons that intermediate filaments important for cell structure?
They can withstand a lot of tension to increase the structural rigidity of the cell AND they anchor other organelles, like the nucleus
71
What determines the identity of the intermediate filament proteins within a cell?
The cell and tissue type
72
# What are each type of cytoskeleton made up of?
Microfilaments ~ actin
Microtubules ~ tubulin
Intermediate filaments ~ diverse group of filamentous proteins
73
# What does each type of cytoskeletal protein make up / what are their roles?
Microfilaments
* cleavage furrow during mitosis
* interacting with myosin to cause movement
Microtubules
* paths for kinesin and dynein to walk on
* forming cilia and flagella
Intermediate filaments
* cell-cell adhesion and cytoskeleton integrity
74
What are the four types of tissue?
1. Epithelial
2. Connective
3. Muscle
4. Nervous
75
Where is epithelial tissue found and what does it do?
Covers the body and lines its cavities
It protects against pathogen invasion and desiccation, and have numerous functions depending on the identity of the organ in which they are found
76
How do epithelial cells remain as one cohesive unit? What structure is involved?
They are joined tightly to each other and to an underlying layer of connective tissue known as the **basement membrane**
77
What do epithelial cells constitute in most organs?
The **parenchyma**, which is the functional part of an organ
78
What is a unique quality of epithelial cells?
They are **polarized**, meaning 1 side faces a lumen (hollow inside of an organ or tube) or the outside world, whereas the other side interacts with underlying blood vessels and structural cells
79
How are different epithelia classified? (what 2 features?)
1. The # of layers they have
2. The shape of their cells
80
What are the different types of epithelia as classified by # of layers?
1. Which epithelia have a *single* layer of cells?
2. Which epithelia have *multiple* layers of cells?
3. Which epithelia seem to have *multiple layers* due to differences in cell height but are, *in reality*, only *1 layer*?
1. Simple epithelia
2. Stratified epithelia
3. Pseudostratified epithelia
81
What are the different types of epithelia as classified by shape of cells?
1. Which epithelia have cube-shaped cells?
2. Which epithelia have long and thin cells?
3. Which epithelia have flat and scale-like cells?
1. Cuboidal epithelia
2. Columnar epithelia
3. Squamous epithelia
82
What does connective tissue do?
Connective tissue **supports the body** and **provides a framework** for the epithelial cells to carry out their functions
83
What do connective tissues constitute in most organs?
The **stroma**, or support structure
84
Most cells in connective tissues produce and secrete materials such as collagen and elastin to form the ______________ ______.
Most cells in connective tissues produce and secrete materials such as collagen and elastin to form the _extracellular matrix_.
85
Do prokaryotes contain membrane-bound organelles?
NO.
86
How is prokaryotic genetic material organized?
A single circular molecule of DNA
87
Where is prokaryotic DNA concentrated in the cell?
the **nucleoid** region
88
What is prokaryotic DNA coiled around?
Histone-like proteins
89
Does Archaea have histones?
Yes, they are true histones.
90
What are the three domains into which all life is classified?
Archaea
Bacteria
Eukarya
91
Which of the three domains of life are prokaryotic?
Bacteria
Archaea
92
What are archaea?
Single-celled organisms that are visually similar to bacteria but contain genes/metabolic pathways that are more similar to eukaryotes
93
What are extremophiles?
This is what archaea used to be considered - they are more commonly isolated from harsh environments with extremely high temperatures, high salinity, or no light
94
What is notable about Archaea's metabolism?
They can utilized different types of energy; some photosynthesize, chemosynthesize, and can generate energy from inorganic compounds, like ammonia
95
# List 3
What are the similarities between Archaea and Eukarya?
* Start translation with methionine
* Contain similar RNA polymerases
* Associate their DNA with histones
96
# list 3
What are the differences between Archaea and Eukarya?
* Archaea has a single circular chromosome
* Archaea divides by binary fission or budding
* Archaea are more structurally similar to bacteria
Archaea are also resistant to many antibiotics
97
What are 2 structures that all bacteria have?
A cell membrane and cytoplasm
98
What structures do some bacteria have?
Flagella
Fimbriae (like cilia)
99
What is a mutualistic symbiotic relationship?
Both human and bacteria benefit
100
What are pathogens or parasites?
Provide no advantage/benefit, instead cause disease
101
What are the 3 main shapes of bacteria?
Cocci = spherical
Bacilli = rod-shaped
Spirilli = spiral-shaped
102
Which bacteria **require** oxygen for metabolism?
Obligate aerobes
103
Which bacteria uses fermentation or other forms of cellular metabolism that do not require oxygen?
Anaerobes
104
What are the 3 different types of anaerobes?
Obligate anaerobes
Facultative anaerobes
Aerotolerant anaerobes
105
What are obligate anaerobes?
**Cannot** survive in an oxygen-containing environment
106
What happens to obligate anaerobes when they are exposed to oxygen?
They produce reactive oxygen-containing radicals that cause cell death
107
What are facultative anaerobes?
They can toggle between metabolic processes, using oxygen for aerobic metabolism if present, and switching back to anaerobic metabolism if not
108
What are aerotolerant anaerobes?
They cannot use oxygen for metabolism, but are not harmed by its presence in the environment
109
What are the biggest differences between eukaryotes and prokaryotes?
Prokaryotes are single-celled and lack a nucleus and membrane-bound organelles
110
# List from outside to inside
What are the components of the outer protective structure of a bacterium?
## Footnote
2 major parts
Cell wall
Cell membrane (plasma membrane)
111
What is the "cell wall + cell membrane" together referred to as?
Cell envelope
112
# List 2
What are the main roles of the cell wall?
1. Provide structure
2. Control the movement of solutes into and out of the bacterium
113
What are the 2 main types of bacterial cell walls?
Gram positive and Gram negative
114
What experimental technique determines the type of bacterial cell wall?
The Gram staining process
115
The Gram staining process involves the use of a ______ ______ stain, followed by a counterstain with a substance called ________.
The Gram staining process involves the use of a _crystal violet_ stain, followed by a counterstain with a substance called _safranin_.
116
What color is a gram positive bacteria? Why?
Deep purple - it absorbs the crystal violet stain
117
What color is a gram negative bacteria?
Pink-red - it absorbs the safranin counterstain
118
What are the 2 things that gram-positive cell walls consist of?
Peptidoglycan
Lipoteichoic acid
119
What is peptidoglycan?
A polymeric substance made from amino acids and sugars
120
What effect does lipoteichoic acid possibly have on the human body?
It may activate the immune system by exposure to these chemicals
121
What are gram-negative cells like?
| Thick or thin? Do they have peptidoglycan?
Very thin! Contain peptidoglycan but in much smaller amounts than gram-positive.
122
What are additional components of gram-negative outer structures (in addition to cell wall and cell membrane?
| What 2 things do these components contain?
Outer membranes containing phospholipids and lipopolysaccharides
123
What reaction do lipopolysaccharides cause in humans? How does this reaction compare to lipoteichoic acid?
It triggers the immune response. The response is much stronger than the response to lipoteichoic acid.
124
What are flagella?
Long, whip-like structures that can be used for propulsion
125
What role do flagella play?
They aid bacteria in moving toward food or away from toxins or immune cells
126
What is the ability of a cell to detect chemical stimuli and move toward or away from them called?
Chemotaxis
127
What are the 3 primary components of a flagella?
Filament
Basal body
Hook
128
What is the filament of a flagella and what is it made of?
The filament is a hollow, helical structure composed of **flagellin**
129
What is the basal body of the flagella?
It is a complex structure that anchors the flagellum to the cytoplasmic membrane and is also the motor of the flagellum
130
What is the hook of the flagella?
It connects the filament and the basal body so that, as the basal body rotates, it exerts torque on the filament, which thereby spins and propels the bacterium forward
131
What are plasmids?
Smaller circular DNA structures that carry bacterial DNA (usually an external source)
This material is "extrachromosomal (extragenomic)"
132
What type of bacterial DNA do plasmids carry? What advantage could it confer on bacteria?
The DNA on plasmids is not necessary for prokaryotic survival, thus, it is not considered part of the bacterial genome. It may confer advantages like antibiotic resistance
133
What major eukaryotic organelle do prokaryotes lack?
Mitochondria
134
Since prokaryotes do not have mitochondria, how do they generate energy?
The cell membrane is used for the electron transport chain and generation of ATP
135
Do prokaryotes have a cytoskeleton?
Yes, but it is primitive and not nearly ascomplex as the eukaryotic cytoskeleton
136
What is the difference between prokaryotic and eukaryotic ribosomes?
Prokaryotic = 30S and 50S subunits
Eukaryotic = 40S and 60S subunits
137
How do prokaryotes reproduce?
Asexual reproduction in the form of binary fission
138
What can prokaryotes do with external genetic material?
They can acquire and utilize it
139
What is binary fission?
A simple form of prokaryotic asexual reproduction
140
What are the steps in binary fission?
| 2 steps
1. The circular chromosome attaches to the cell wall and replicates while the cell continues to grow in size
2. The plasma membrane and cell wall grow inward along the midline of the cell to produce 2 identical daughter cells
141
Which is quicker - binary fission or mitosis? Why?
Binary fission - there are fewer steps
142
What are virulence factors and where are they found?
Virulence factors may be carried on plasmids and they increase bacterial pathogenicity
e.g. may aid toxin production, create projections that allow attachment to certain cells, or evade host's immune system
143
What are the three main modes of genetic transfer/recombination in bacteria?
Transformation
Conjugation
Transduction
144
What does genetic recombination accomplish?
It increases bacterial diversity and permits bacterial evolution over time.
145
What type of plasmids can be integrated into the bacterial genome?
Episomes
146
What is bacterial transformation?
The integration of foregin genetic material into the host genome
147
Where does genetic material come from in bacterial transformation?
From other bacteria that spill their contents (upon lysing) into the vicinity of a bacterium that can undergo transformation
148
What type of bacteria commonly carries out transformation?
Gram-negative rods
149
What is bacterial conjugation?
A bacterial form of sexual reproduction
2 cells form a **conjugation bridge** that facilitates the transfer of genetic material.
150
What direction does bacterial conjugation occur in?
Unidirectionally, from the donor male (+) to the recipient female (-)
151
What is the bacterial conjugation bridge made of?
Appendages called **sex pili** that are found on the donor male
152
How is the sex pilus made?
Bacteria must contain plasmids known as **sex factors** that contain the necessary genes
153
What is the F (fertility) factor?
A sex factor in E. coli. During conjugation, an F+ cell replicates its F factor and donates the copy to the F- cell to convert the F- to an F+. Now that cell can carry out conjugation.
154
What process allows the sex factor plasmid to be integrated into the host genome?
Transformation
155
What is special about cells that have a high frequency of recombination (Hfr)?
They have incorporated an F factor into their chromosome and can then transfer the chromosome during conjugation.
156
What is a vector?
A virus that carries genetic material from one bacterium to another
157
What is bacterial transduction?
the process by which DNA is transferred from one bacterium to another by a vector
158
What is a bacteriophage?
A virus that can infect bacteria specifically
159
Viruses are obligate intracellular pathogens. What does this mean?
They cannot reproduce outside of a host cell.
160
Because bacteriophages are obligate intracellular pathogens, what can happen during their assembly?
They can accidentally incorporate a segment of host DNA
161
What happens when a bacteriophage (that has incorporated a previous host's DNA) infects another bacterium?
It can release trapped DNA into the new host cell, which can then be integrated into the bacterial genome, giving the new host additional genes
162
What are transposons?
Genetic elements capable of inserting and removing themselves from the genome
163
Where are transposons found?
Prokaryotes and eukaryotes
164
What happens if a transposon is inserted within a coding region of a gene?
The gene may be disrupted
165
What are phases of bacterial growth?
1. Lag phase
2. Exponential/log phase
3. Stationary phase
4. Death phase
166
What occurs during the lag phase of bacterial growth?
Bacteria adapt to their new environment's conditions
167
What occurs during the exponential/log phase of bacterial growth?
The rate of division increases exponentially
168
What occurs during the stationary phase?
Resources are depleted after the exponential phase, leading to slowed reproduction
169
What occurs in the death phase?
The environment can no longer support the number of bacteria and resources are depleted
170
What are main components of viruses?
Genetic material
Protein coat
Sometimes an envelope containing lipids
171
What is the viral protein coat known as?
Capsid
172
What are some capsids surrounded by?
An envelope composed of phospholipids and virus-specific proteins
173
What is a special quality of the viral envelope?
It is very sensitive to heat, detergents, and dessication, making it easier to kill
174
How do viruses reproduce?
They depend on a host cell in which they must express and replicate their genetic info.
175
Why can't viruses reproduce independently?
They lack ribosomes to carry out protein synthesis
176
What happens after a virus hijacks a cell's machinery? What are viral progeny called?
It replicates and produces viral progeny called **virions** that can be released to infect additional cells
177
How do bacteriophages infect bacteria?
They simply inject their genetic material (without entering) and leave the remaining structures outside the infected cell
178
What other structures does a bacteriophage contain?
| 2 structures
A tail sheath and tail fibers
179
What is a viral tail sheath?
It acts like a syringe that injects genetic material into a bacterium
180
What are viral tail fibers?
They help the bacteriophage recognize and connect to the correct host cell. They serve as an anchor to the host cell membrane
181
What quality do some tail fibers have?
Enzymatic activity, allowing for cell wall penetration and poreformation in the cell membrane
182
What are the 2 types of single-stranded RNA viruses?
Positive sense and negative sense
183
What are positive sense ssRNA viruses?
The genome may be directly translated to functional proteins by the ribosomes of the host cell, just like mRNA
184
What are negative-sense ssRNA viruses?
They act as a template for synthesis of a complementary strand, which can then be used as a template for protein synthesis
185
What does a negative-sense ssRNA virus need for synthesis?
The virion must carry RNA replicase to ensure the synthesis of the complementary strand
186
What is a retrovirus?
Enveloped, single-stranded RNA viruses in the family *Retroviridae*
187
What does a retrovirus's virion usually contain?
2 identical RNA molecules
188
What enzyme do retroviruses carry?
Reverse transcriptase
189
What does reverse transcriptase do?
It synthesizes DNA from ssRNA.
190
What happens to the DNA synthesized by reverse transcriptase? Why does it make it difficult for retroviruses to be treated?
It is integrated into the host cell genome, where it is replicated and transcribed as if it were the host cell's DNA
The infected cell must be killed
191
What is a common retrovirus?
HIV
192
What cells can viruses infect?
Only a specific set of cells, because they must bind to specific host cell receptors
193
What happens when the virus binds the correct receptors?
The virus and cell are brought close together
194
How does the virion of an enveloped virus enter the host cell?
The virus fuses with the plasma membrane of the host cell
195
What can a host cell sometimes do to a virion bound to its membrane?
It may mistake it for nutritients and endocytose the virus
196
What happens after a cell is infected by a virus?
The genetic material is translocated to the correct location in the cell in order to be properly transcribed and translated
197
Where do most DNA viruses go after infecting bacteria?
Most go to the nucleus to be transcribed into mRNA, which then goes to the cytoplasm to be translated into proteins
198
Where does positive-sense RNA viral genetic material go after infection?
Stays in the cytoplasm to be directly translated into protein by host cell ribosomes
199
Where do negative sense RNA viruses go?
They synthesize a complementary RNA strand using RNA replicase, which is then translated to form proteins
200
Where does DNA formed through reverse transcription in retroviruses go after infecting bacteria?
To the nucleus, to be integrated into the host genome
201
What are common types of proteins that viral RNA is translated into?
Structural capsid proteins that allow for the creation of new virions in the cytoplasm in the host cell
202
What happens once the viral genome has been replicated in the bacterial host cell?
It is repackaged within the capsid in its original form (meaning if it came as ssRNA, for example, it must return as ssRNA)
203
What are 3 ways in which viral progeny can be released?
* Viral invasion can initiate cell death, which results in spilling of progeny
* The host cell may simply lyse from having too many virions (unideal for virus, since cell is no longer viable for viral replication)
* The virus can fuse to the host cell's plasma membrane in a process called **extrusion** (ideal, keeps host cell alive for use!)
204
What is it called when a virus can keep using a host cell to replicate?
Productive cycle
205
What is the lytic cycle?
The bacteriophage maximizes the use of the cell's machinery with little regard for the survival of the host cell. Once swollen, the cell lyses, and other bacteria can be infected
206
What are viruses in the lytic phase called?
Virulent
207
What happens if the virus doesn't lyse the bacterium? What cycle does this initiate?
It may integrate into the host genome as a provirus or prophage, initiating the **lysogenic cycle**
208
What occurs in the lysogenic cycle?
The virus will be replicated as the bacterium reproduces because it's now a part of the host genome
209
Can the virus de-integrate from the host genome after being incorporated?
Yes! Environmental factors can cause the provirus to leave and revert to the lytic cycle
210
What can happen as a provirus leaves the genome?
It can extract bacterial genes, allowing transduction of genes from one bacterium to another
211
How can phage integration into the host bacterial genome be beneficial?
Infection with 1 strain of phage can make the bacterium less susceptible to superinfection with other phages - may confer an evolutionary advantage
212
What are prions?
Infectious proteins that cause disease by trigger misfolding of other proteins
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What type of misfolding do prions typically cause and what effect does this have on the protein? What lasting effects does this have on the cell?
Conversion of a proteion from alpha-helix to beta-sheet, reducing protein solubility and the ability of the cell to degrade the protein, ultimately causing protein aggregation, which interferes with cell function
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What are viroids?
Small pathogens consisting of a very short circular ssRNA that infect plants (some can be found in humans, like HDV)
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What do viroids do?
they can bind to a large number of RNA sequences and can **silence** genes in the plant genome, preventing protein synthesis and disrupting metabolism and causing structural damage
