Chapter 1: The Cell Flashcards

1
Q

cell theory

A
  1. all living things are composed of cells
  2. the cell is the basic functional unit of life
  3. cells only arise from preexisting cells
  4. cells carry genetic information in the form of deoxyribonucleic acid (DNA). this genetic material is passed on from parent to daughter cell.
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2
Q

membrane

A

Each cell has one that encloses cytosol.
Most eukaryotic organelles enclosed by membranes.
Eukaryotic membranes have phospholipid bilayer–hydrophobic interior, hydrophilic exterior

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3
Q

phospholipid bilayer

A

Hydrophilic exterior allows electrostatic interactions inside and outside of cell
Hydrophilic interior allows for selective permeability between interior of cell and environment

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4
Q

cytosol

A

Allows for diffusion of molecules throughout the cell

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5
Q

nucleus

A

Most heavily tested organelle on MCAT
Only present in eukaryotes
Surrounded by nuclear membrane/envelope (double membrane)
Contains all of genetic material necessary for replication (DNA), which is organized into chromosomes
Nuclear pores allow for selective two way exchange between cytoplasm and nucleus

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6
Q

nuclear envelope

A

Double membrane around nucleus
Allows for selective two way exchange between nucleus and cytoplasm via nuclear pores
Creates two distinct environments in the cell (nucleus and cytoplasm)
Allows for compartmentalization of transcription and translation

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7
Q

DNA

A

Contains coding regions called genes
Wound around organizing proteins called histones
Further wound into linear strands called chromosomes
Location in nucleus allows for compartmentalization of DNA transcription separate from RNA translation

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8
Q

nucleolus

A

Subsection of nucleus
Where rRNA is synthesized
25% of nucleic volume

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9
Q

mitochondria

A

Eukaryotic organelle
Powerhouse of the cell
Contains outer and inner membrane
Semi-autonomous (unlike other organelles)
Contain some of own genes and replicate independently of nucleus via binary fission
Thought to have come about when anaerobic prokaryote engulfed aerobic prokaryote
Capable of killing cell by release of enzymes from ETC

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10
Q

outer mitochondrial membrane

A

Barrier between cytosol and inner environment of mitochondria

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11
Q

inner mitochondrial membrane

A

Thrown into numerous infoldings (cristae)

Contains molecules and enzymes necessary for electron transport chain

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12
Q

cristae

A

Folds in inner mitochondrial membrane

Increases surface area available for electron transport chain enzymes

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13
Q

intermembrane space

A

Space between outer and inner mitochondrial membranes

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14
Q

matrix

A

Space inside inner mitochondrial membrane

Pumping of protons from matrix to intermembrane space establishes proton-motive force

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15
Q

proton-motive force

A

Pumping of protons from matrix to intermembrane space establishes proton-motive force
These protons flow through ATP synthase to generate ATP during oxidative phosphorylation

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16
Q

apoptosis

A

Programmed cell death
Kick started when mitochondria releases enzymes from ETC
Also can happen when lysosome release hydrolytic enzymes

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17
Q

lysosome

A

Membrane bound organelles that contain hydrolytic enzymes capable of breaking down substances like cellular waste and substances ingested during endocytosis

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18
Q

autolysis

A

When lysosome releases hydrolytic enzymes to result in apoptosis
Lead to degradation of cellular components

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19
Q

endoplasmic reticulum

A

Series of interconnected membranes that are contiguous with nuclear envelope
Surround nucleus
Single membrane is folded into multiple invaginations, which creates complex structures with central lumen
Two kinds: rough and smooth

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20
Q

rough ER

A

Studded with ribosomes

Permit translation of proteins destined for secretion directly in lumen

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21
Q

smooth ER

A

Lacks ribosomes
Utilized primarily for lipid synthesis and drug/poison detoxification
Transports proteins from rough ER to Golgi apparatus

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22
Q

Golgi apparatus

A

Consists of stacked membrane bound sacs
Right outside ER
Materials from ER to Golgi are transported in vesicles
Modifies ER products by addition of various groups, like carbohydrates, phosphates, and sulfates
Can add signal sequence to products that direct delivery of product to specific cellular location
Products are then repacked into vesicles and transferred to correct cellular destination

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23
Q

exocytosis

A

Release of secretory products

After release from Golgi apparatus, secretory storage vesicle merges with cell membrane and contents are released

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24
Q

vesicle

A

Materials created in RER are transported to Golgi apparatus (via SER) in vesicles
Vesicles also transport materials from Golgi to cellular destination
If product destined for secretion, vesicle will merge with cell membrane for exocytosis release

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25
distribution of organelles
Different cells have different organelle amounts Cells that require locomotion (i.e. sperm) have high concentration of mitochondria (energy!) Cells involved in secretion (pancreatic/endocrine tissue) have high concentration of RER and Golgi apparatus Transport cells (RBC's) have no organelles at all
26
peroxisomes
Contain hydrogen peroxide Allow for breakdown of very long fatty acid chains via beta-oxidation Synthesis of phospholipids Contain some pentose phosphate pathway enzymes
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cytoskeleton
Maintain structure/shape of cell Transport of materials around cell Components: microfilaments, microtubules, and intermediate filaments
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microfilaments
Made of rods of actin Actin filaments organized into bundles & networks--resistant to breakage and compression Cell protection Filaments can also use ATP to generate force for movement by interacting with myosin (muscle contraction) Play role in cytokinesis--division of materials between daughter cells Pinch off connection between daughter cells
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microtubules
Hollow polymers of tubulin Primary pathways for vesicle carrying via motor proteins (kinesin and dynein) Make up cilia and flagella
30
cilia
Projections from cell primarily involved in material movement along surface of cell Mucus movement in respiratory tract Composed of microtubules
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eukaryotic flagella
Involved in movement of cell itself Composed of microtubules made of tubilin 9+2 arrangement
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9+2 structure
Cilia and flagella microtubule arrangement 9 pairs of microtubules in outer ring 2 microtubules at center Only seen in eukaryotic cells of motility
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centrioles
Found in centrosome 9 microtubules with hollow center Organize mitotic spindle during mitosis when migrate to opposite poles of dividing cells Attach to chromosomes via kinetochores and exert pulling apart force on sister chromatids
34
Intermediate filaments
``` Diverse group of filamentous proteins (keratin and desmin) Cell-to-cell adhesion Maintenance of cytoskeleton integrity Make cell more rigid Anchor organelles like nucleus ```
35
epithelial tissue
Cover body and line cavities Protection against pathogen invasion and desiccation Absorption, secretion, sensation Cells tightly joined together and to underlying basement membrane Polarized: one side interacts with lumen/outside world, the other side interacts with blood vessels and structural cells
36
parenchyma
Functional part of an organ Nephrons in kidney, hepatocytes in liver, acid producing cells in stomach Consists of epithelial cells Stroma is support structure (thanks to connective tissue)
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simple epithelia
One layer of cells
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stratified epithelia
Multiple layers of cells
39
psuedostratified epithelia
Appear to have multiple layers, really only has one
40
connective tissue
Supports body and provides framework for epithelial cells to carry out functions Main contributors of stroma (support structure) when epithelial cells contribute to parenchyma of organ Bone, cartilage, tendons, ligaments, adipose tissue, blood Most cells produce and secrete materials like collagen and elastin to form extracellular matrix
41
prokaryotes
Simplest of all organisms No membrane bound organelles Single circular molecule of DNA concentrated in nucleoid region DNA not coiled around histones No membrane bound organelles, but may have plasmids 30S and 50S ribosomes
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nucleoid region
Where circular DNA molecule in prokaryotes is concentrated This DNA not carried around histones May have plasmids
43
archaea
Single celled organisms that are visually similar to bacteria Contain genes and metabolic pathways that are more similar to eukaryotes (start translation w/ methionine, contain similar RNA polymerases, associate DNA with histones) Extremophiles Resistant to many antibiotics Divide by binary fission or budding
44
bacteria
All contain cell membrane and cytoplasm Some have flagella and fimbriae (analogous to cilia) Outnumber human cells in the body 10:1 Do not form multicellular organisms, so responsible for protecting self from environment
45
mutualistic symbiotes
Bacteria in the gut produce vitamin K (clotting) and biotin Some bacteria prevent overgrowth of other bacteria Babies are not colonized with bacteria yet, so given a vitamin K shot at birth to aid in clotting
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obligate aerobes
Require oxygen for metabolism
47
anaerobes
Use fermentation or other metabolism that does not require oxygen
48
obligate anaerobes
Cannot survive in oxygen containing environment
49
facultative anaerobes
Can use oxygen for aerobic metabolism if present or can switch to anaerobic metabolism if no oxygen
50
aerotolerant anaerobes
Unable to use oxygen but not harmed by it
51
envelope
Cell wall + cell membrane in prokaryotes
52
cell wall
In prokaryotes, forms outer barrier of cell Provides structure and controls movement of solutes into and out of bacterium Allows for maintenance of concentration gradient relative to environment Two types of cell walls: (dependent on Gram staining process) a) gram positive b) gram negative
53
gram positive bacteria
``` Absorbs crystal violet stain Appears deep purple Consist of thick layer of peptidoglycan Provides protection from host organisms immune system Also contains lipoteichoic acid No outer membrane ```
54
peptidoglycan
Polymetric substance made from amino acids and sugars Present in gram+ bacteria, and gram- (but in small amounts) Penicillin targets the enzyme that catalyzes the cross-linking of peptidoglycan--if a gram+ cell can't cross-link cell wall, it's no longer an effective barrier
55
lipoteichoic acid
Present in gram+ bacteria | Function unknown, but human immune system may be activated by exposure to this chemical
56
gram negative bacteria
Do not absorb crystal violet stain Absorb safranin counterstain, and appear pink-red Thin layer of peptidoglycan Contain lipopolysaccharides and phospholipids
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chemotaxis
Ability of a cell to detect chemical stimuli and move towards or away from them
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bacterial flagella
Made of flagellin | Composed of hook, filament, and basal body
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filament
Part of flagella | Hollow, helical structure composed of flagellin
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basal body
Complex structure that anchors the flagellum to the cytoplasmic membrane and is also the motor of the flagellum, rotating at rates of up to 300 hz
61
hook
Connects filament and basal body so that, as basal body rotates, it exerts torque on the filament, which can thereby spin and exert the bacterium forward
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plasmids
Small circular structures on which DNA acquired from external sources may be carried This DNA is not vital to survival of bacterium, but may carry advantage (like antibiotic resistance) May contain virulence factors, which increase how pathogenic it is
63
binary fission
Simple form of asexual reproduction seen in prokaryotes Circular chromosome attaches to cell wall and replicates while cell continues to grow Plasma membrane pinches towards midline to produce two identical daughter cells Proceeds more rapidly than mitosis, because requires fewer events
64
virulence factors
Traits that increase how pathogenic a bacterium is, like toxin production, projections that allow it to attach to cells, or evasion of immune system Carried in plasmids
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episomes
Subset of plasmids Capable of integrating into genome of bacterium Help recombination and thus evolution of bacterial species over time
66
transformation
Form of recombination process Results from integration of foreign genetic material into host genome Often from lysed bacteria that spill genetic contents into vicinity of bacteria capable of bacterium capable of transformation Most gram- rods
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conjugation
Form of recombination process Bacterial form of mating Two cells form conjugation bridge that allows for the transfer of genetic material Transfer is unidirectional (from donor male (+) to recipient female (-)) Bridge is made from appendages called sex pili found on donor male Rapid acquisition of antibiotic of antibiotic resistance or virulence factors throughout a colony F factor example: Bacteria that possess F factor are called F+ cells; without are F- F+ replicates F factor during conjugation and donates to F- F- is now F+
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sex factor
Certain plasmids that are necessary for the formation of sex pili which creates the conjugation bridge Relevant to conjugation Best studied sex factor is the F (fertility) factor in E. coli
69
F (fertility) factor
Best studied sex factor (in E. coli) Type of plasmid Bacteria that possess it are called F+ cells; without are F- F+ replicates F factor during conjugation and donates to F- F- is now F+
70
transduction
Type of recombination process Only recombination process that requires a vector--a virus that carries genetic material from one bacterium to another Viruses can accidentally trap segment of host DNA during assembly inside host during reproduction, and when bacteriophage infects another bacterium, it can release this trapped DNA into new host cell. This trapped DNA can integrate into genome, giving host additional genes.
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transposons
Genetic elements capable of inserting and removing selves from genome. Observed in prokaryotes and eukaryotes
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lag phase
Bacteria adapt to local conditions
73
exponential/log phase
Bacteria grow exponentially | Resources reduced
74
stationary phase
Because resources were reduced in exponential phase, growth is slowed
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death phase
environment can no longer support amount of bacteria
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viruses
Are not living things; acellular Lack organelles and a nucleus Have genetic material, protein coat, sometimes an envelope containing lipids, tail sheath, tail fibers Genetic material may be SS or DS, circular or linear, RNA or DNA Lack ribosomes to carry out protein synthesis
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capsid
virus protein coat
78
virus envelope
Surrounds capsid Sensitive to heat, detergents, and desiccation Easier to kill Composed of phospholipids and virus-specific proteins
79
virions
Viral progeny | Released to infect additional cells
80
bacteriophages
Viruses that target bacteria | Do not enter bacteria, but inject genetic material
81
tail sheath
Virus "syringe", that can inject genetic material into bacterium
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tail fibers
help bacteriophage recognize and connect to correct host cell
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positive sense
Type of ssRNA virus | Implies the genome may be directly translated to functional proteins by the ribosomes by the host cells, just like mRNA
84
negative sense
Type of ssRNA virus Requires the synthesis of an RNA strand complementary to the negative sense RNA strand, which can then be used as a template for protein synthesis Must carry an RNA replicase in the virion to ensure that the complementary strand is synthesized
85
retroviruses
Enveloped, ssRNA viruses in the family Retroviridae Virion usually carries 2 identical RNA molecules Carry reverse transcriptase, which synthesizes DNA from ssRNA The DNA then integrates into the host cell genome, where t is replicated and transcribed as if it were the host cell's own DNA. Only way to cure the infection is to kill the infected cell itself
86
viral infection
Viruses can only bind to specific set of cells with proper receptors Enveloped viruses, like HIV, (*which enter the cell intact*) fuse with plasma membrane of cell, allowing entry of virion into host cell Bacteriophages only inset genetic material Host cell may misinterpret binding of virus to membrane as nutrient, etc, and bring virus into cell via endocytosis
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DNA virus reproduction
Must go to the nucleus in order to be transcribed to mRNA | mRNA then goes to cytoplasm to be translated to protein
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positive sense virus reproduction
Genetic material stays in cytoplasm, where it's directly translated to protein by host cell ribosomes
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negative sense virus reproduction
Requires synthesis of complementary RNA strand via RNA replicase, which can then be translated to form proteins
90
retrovirus reproduction
Forms DNA through reverse transcription that travels to nucleus, where it can be integrated into host genome Must transcribe new copies of ssRNA from DNA that entered host genome to reenter viral genome
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lytic cycle
Bacteriophage makes maximal use of cells machinery with little regard for survival of host cell Once host cell is swollen with new virions, cell lyses, and other bacteria can be infected Bacteria in the lytic phase are termed virulent
92
virulent
Bacteria in the lytic phase | Swell with new virions and lyse
93
lysogenic cycle
If virus does not lyse the bacterium, virus will be replicated as bacterium replicates because it is now part of host's genome Virus is known as provirus or prophage May enter lytic cycle via variety of factors
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prion
Infectious proteins Nonliving things Cause disease by triggering misfolding of other proteins Usually involves conversion of a protein from alpha-helical structure to beta-pleated sheet Drastically reduces solubility of protein, as well as ability of cell to degrade misfolded protein Eventually reduces function of cell Known to cause mad cow, Creutzfeldt-Jakob, and familial fatal insomnia
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viriods
Small plant pathogens Consists of very short circular ssRNA Bind to RNA sequences and silence genes in the plant genome Prevent synthesis of necessary proteins and can subsequently cause metabolic and structural derangement in the plant cell Often plant pathogens, but some human pathogens, like Hepatitis D