Chapter 13 Flashcards

(57 cards)

1
Q

3 important consequences of mutations

A

1) Source of all genetic variation, which further provides the raw material for evolution
2) Source of many diseases and disorders
3) Useful for probing fundamental biological processes

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2
Q

Consequence of somatic mutation

A

the mutation is passed to new cells through mitosis, creating a clone of cells w/ mutant gene

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3
Q

Consequence of germ-line mutation

A

1/2 the members of the next generation carry the mutation in all their cells

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4
Q

What’s a transition mutation

A

Transitions are base substitutions in which purines are replaced by purines or pyrimidines are replaced by pyrimidines.

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5
Q

What are transversion mutations

A

Transversions are base substitutions in which a purine replaces a pyrimidine or a pyrimidine replaces a purine.

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6
Q

What are the consequences of insertion/deletion mutations

A

1) Frameshift mutations

2) In-frame insertions and deletions

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7
Q

What are transition and transversion categorized as

A

base substitutions

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8
Q

What’s the result of a missense mutation

A

A missense mutation alters the one nucleotide in the coding sequence so that one amino acid is substituted for another.

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9
Q

Result of nonsense mutation

A

A nonsense mutation changes a codon that specifies an amino acid into a stop codon.

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10
Q

Result of silent mutation

A

A silent mutation produces a synonymous codon that specifies the same amino acid as the original sequence, whereas a neutral mutation alters the amino acid sequence but does not change the functioning of the protein.

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11
Q

What’s forward mutation

A

wild type to mutant type mutation

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12
Q

What’s a reverse mutation

A

mutant type to wild type mutation (restores the wild-type )

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13
Q

4 phenotypic effects of mutations

A

1) Loss-of-function mutation
2) Gain-of-function mutation
3) Conditional mutation
4) Lethal mutation

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14
Q

What’s a suppressor mutation

A

a mutation that hides or suppresses the effect of another mutation

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15
Q

T/F: Suppressor mutation occurs at the same site as the original mutation

A

F: it occurs at a different site than the original mutation

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16
Q

What’s an intragenic mutation

A

intragenic (within the same gene as the original mutation)

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17
Q

What’s an intergenic mutation

A

Suppressor mutation within a different gene than the one originally affected

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18
Q

What’s a loss-of-function mutation

A

causes complete or partial loss of function

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19
Q

what’s a gain-of-function mutation

A

causes the appearance of a new trait or function or causes the appearance of a trait in inappropriate tissue pr at an inappropriate time

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20
Q

What are some other ways that mutations can occur

A

Spontaneous replication errors
Spontaneous chemical changes
Chemically induced mutations
Radiation

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21
Q

What are transposable elements

A

Transposable elements are mobile DNA sequences that insert into many locations within a genome and often cause mutations and DNA rearrangements.

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22
Q

What do base analogs do

A

Base analogs can become incorporated into DNA in the course of replication and pair with the wrong base (through wobble) in subsequent replication events.

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23
Q

What do alkylating agents do

A

donate alkyl groups

24
Q

What do alkylating agents, deaminating chemica;s and hydroxylamine do?

A

Alkylating agents, deaminating chemicals, and hydroxylamine lead to mutations by modifying the chemical structure of bases.

25
What do Intercalating agents do
Intercalating agents insert into the DNA molecule and cause single-nucleotide insertions and deletions: and often produce frameshifts
26
How does raditation cause mutations
Ionizing radiation is mutagenic, altering base structures and breaking phosphodiester bonds.
27
Give an example of radiation mutations
Ultraviolet light produces pyrimidine dimers, which block replication because they distort DNA
28
What can you do to identify if a substance is a chemical mutagen
Ames test
29
What are expanding nucleotide repeats
Expanding nucleotide repeats are mutations in which the number of copies of a set of nucleotides increases with the passage of time
30
Name 1 human genetic disease caused by expanding nucleotide repeats
huntington disease
31
What causes a tautomeric shift
A tautomeric shift takes place when a proton changes its position, resulting in a rare tautomeric form.
32
What can happen as a consequence of a tautomeric shift
there can be odd base-pairing arrangements, Ex: C-A, T-G
33
What characteristic of DNA allows non-standard base pairings
the flexibility in DNA structure
34
What's the consequence of wobble base pairing***
there's a replicated error: an error that gets carried along through replication
35
What are some things that may cause insertions/deletions
strand slippage, unequal crossing over ( and intercalating agents)
36
How does deamination cause mutations
deamination changes DNA bases for other ones and therefore causes mutations in sequences
37
how does depurination cause mutaitons
it removes a purine, which would be replaced most often by an adenosine, and when this altered strand is used as a template for replication, the new strands will have the wrong bases, causing a mutation
38
2 common elements of transposable elements
1) terminal inverted repeats | 2) short flanking direct repeats generated at the point of insertion.
39
What's replicative transposition
A new copy of the transposable element inserts in a new location, and the old copy stays behind.
40
What's nonreplicative transposition
The old copy excises from the old site and moves to a new site
41
What's RNA intermediate transposition
RNA is transcribed from the transposable element (DNA) and is then copied back into DNA by reverse transcriptase.
42
By what process do retrotransposons transpose?
RNA intermediate transposition, a form of replicative transposition
43
How do transposons cause mutations
1) Inserting into another gene and disrupting it | 2) Promoting DNA rearrangements such as deletions, duplications, and inversions
44
What are the mechanisms by which we can repair DNA mutations?
mismatch repair, direct repair, base-excision repair, and nucleotide-excision repair.
45
How does deletion rearrange DNA
pairing by looping and crossing over btw 2 transposable elements oriented in the same direction leads to deletion
46
How does inversion rearrange DNA
pairing by bending and crossing over btw 2 transposable elements oriented in opposite directions leads to an inversion
47
How does deletion/duplication rearrange DNA
misalignments and unequal exchange btw transposable elements located on sister chromatics leads to 2 chromosome with deletion and the other with duplication
48
Why is it important that repair mechanisms have a lot of overlap in the types of damage they repair
It ensures that no mutations go unrepaired because if 1 mechanism misses the mutation, the other will catch it
49
How does mismatch repair work****
Mismatched bases and other DNA lesions are | corrected by mismatch repair.
50
What does direct repair fix
Restores the correct structures of altered | nucleotides
51
What does base-excision repair fix
a modified base is excised, and then the entire nucleotide is replaced.
52
What does nucleotide-exicision repair fix
removes bulky DNA lesions (such as pyrimidine dimers) that distort the double helix.
53
How does nucleotide-exicision repair work
The two strands of DNA are separated, a section of the DNA containing the distortion is removed, DNA polymerase fills in the gap, and DNA ligase seals the filled-in gap.
54
How does mismatch repair work
Enzymes cut out a section of the newly synthesized | strand of DNA and replace it with new nucleotides.
55
How does base-excision repair work
Glycosylase enzymes recognize and remove specific types of modified bases.
56
What's an example of genetic diseases caused by faulty DNA repair
predisposition to cancer
57
What are in-frame insertion/deletions
They’re insertion/deletions that do not have any effect on the reading frame