Chapter 3 Flashcards

(32 cards)

1
Q

What are amino acids?

A

molecules that have two functional groups

  1. amine (-NH2)
  2. carboxyl (-COOH) or deprotonated version (COO-)
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2
Q

Whats the alpha carbon?

A

Carbon bonded to 4 different substituents and is a tetrahedral
-binded to amine, carboxyl, h, and and r-group

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3
Q

What do the r-groups give?

A

properties and function

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4
Q

How do you name?

A

start from the alpha carbon and go down the R-group

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5
Q

L vs D amino acids

A

L - if go to left (counterclockwise = S configuration)

D - R

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6
Q

How many non polar, aliphatic R-groups?

A

7

  • water fearing want to be on inside
  • nonpolar - exhibits no separation of charge, no net dipole
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7
Q

How many aromatic R-groups?

A

3

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8
Q

How many polar, uncharged R-groups?

A

5

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9
Q

How many positively charged R-groups?

A

3

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10
Q

How many negative charged R-groups?

A

2

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11
Q

What are the non polar, aliphatic R-groups names?

A

Glycine, Alanine, Proline, Leucine, Methionine, Valine, Isoleucine

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12
Q

What are the non polar, aliphatic R-groups abbreviation?

A

Gly, Ala, Pro, Leu, Met, Val, Iso

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13
Q

What are the non polar, aliphatic R-groups letters?

A

G, A, P, L, M, V, I

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14
Q

What are the aromatic R-groups names?

A

Phenylalanine, Tyrosine, Tryptophan

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15
Q

What are the aromatic R-groups abbreviation?

A

Phe, Tyr, Trp

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16
Q

What are the aromatic R-groups letters?

17
Q

What are the polar uncharged R-groups names?

A

Serine, Threonine, Cystine, Asparagine, Glutamine

18
Q

What are the polar uncharged R-groups abbriavtions?

A

Ser, Thr, Cys, Asn, Gln

19
Q

What are the polar uncharged R-groups letters?

A

S, T, C, N, Q

20
Q

What are the polar charged R-groups names?

A

Lysine, Arginine, Histidine

21
Q

What are the polar charged R-groups abbriavtions?

A

Lys, Arg, His

22
Q

What are the polar charged R-groups letters?

23
Q

Negatively charges R-groups names

A

Asparate, Glutamate

24
Q

Negatively charges R-groups abbr.

25
Negatively charged R-groups letter
D, E
26
How are peptides formed?
by small condensations of amino acids
27
Where does numbering of an amino acid start?
the amino terminus
28
Where does naming an amino acid start from?
the N-terminus (amino end)
29
Proteins are?
polypeptides (covalently linked alpha amino acids) + any of the following - cofactor - coenyzme - prothetic groups
30
what is a cofactor?
non-amino acid component | -metal ions and organic molecules
31
what is a coenzyme?
used to designate a organic coenzyme
32
what is a prosthetic group?
covalently attached cofactors | -ex. heme in myoglobin