Chromosomal abnormalities 2 Flashcards

(39 cards)

1
Q

Examples of structural abnormalities of chromosomes

A

-Translocations
-Reciprocal
-Robertsonian
-Inversion
-Deletion
-Duplication
Rings
Isochromosomes
-Microdeletions/
Microduplications

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2
Q

Steps involved in structural abnormalities arising in chromosomes

A
  • Double strand DNA breaks
  • Occur throughout cell cycle
  • Generally repaired through DNA repair pathways
  • Mis-repair leads to structural abnormalities
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3
Q

What is reciprocal translocation?

A

Exchange of two segments between non-homologous chromosomes

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4
Q

What is non homologous end joining(NHEJ) and how does it arise?

A

If there is a double stranded break, sometimes instead of being stuck back together appropriately, it finds another free end and sticks there

  - Stuck to the wrong chromosome 
  - Physical exchange between two non-homologous chromosomes  
 - Happens if they are physically close to one another
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5
Q

What is translocation?

A

Translocation is where we happen to have two double strands breaks

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6
Q

What are translocation due to inappropriate NHEJ also known as?

A

Also known as balanced translocations

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7
Q

What is the key characteristic of balanced translocations?

A

The key characteristic is that there is no net gain or loss of genetic material – it’s all there, just in a different place

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8
Q

What chromosome is balanced translocation an example of?

A

Philadelphia chromosome

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9
Q

What is the Philadelphia chromosome involved in?

A

Involved in causing chronic myeloid leukaemia

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10
Q

Formation of balanced translocation in philadelphia chromosome

A
  • Chr 9 has ABL proto-oncogene and Chr22 has BCR
  • BCR has tendency for double stranded breaks
  • Double stranded break causing exchange of material between 9 and 22
  • Causes a fusion gene and results in ABL going from being proto-oncogenic to oncogenic
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11
Q

What is unbalanced translocation?

A

too much or too little of a particular chromosome

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12
Q

What are reciprocal translocations?

A

Exchange of two segments between non-homologous chromosomes

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13
Q

When is there deleterious phenotypes in reciprocal translocations?

A

deleterious phenotype if breakpoint affects regulation of a gene

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14
Q

What are carriers of balanced translocations at risk of?

A

Carrier of balanced translocation at risk of producing unbalanced offspring

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15
Q

What are individuals with unbalanced translocations at significant risk of?

A

Unbalanced individuals at significant risk of chromosomal disorder

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16
Q

How do you go from a balanced carrier to an unbalanced zygote?

A

Problems arise when gamete has one intact chromosome and one derivative chromosome

  • Zygote will then have an extra copy of one part of the intact chromosome
    - Becomes partially trisomic and partially monosomic
17
Q

What is reciprocal translocations?

A

no loss or gain of material and so there’s often little consequence to the cell of carrying a reciprocal translocation

18
Q

Steps involved in reciprocal translocation

A

SEE NOTES AND DIAGRAM

19
Q

What is the clinical results of unbalanced reciprocal translocation?

A
  • Many lead to miscarriage (hence why a woman with a high number of unexplained miscarriages should be screened for a balanced translocation)
  • Learning difficulties, physical disabilities
20
Q

What chromosomes do Robertsonian translocations involve?

A

Involve acrocentric chromosomes

-13, 14, 15, 21, 22

21
Q

What is a robertsonian translocation

?

A

Two acrocentric chromosomes break at or near their centromeres
-The fragments are joined together again it’s possible for just the two sets of long arms to be brought together and there’s loss of the satellites

22
Q

What is the most common robertsonian translocation?

A

Most common Robertsonian translocation involves chromosomes 13 and 14

23
Q

What does the robertsonian translocation of chromosomes 13 and 14 result in and what does the resultant chromosome contain?

A

Results in loss of two short arms and fusion of the two long arms, with either one or two centromeres
-The resultant chromosome usually contains the long arms of different chromosomes

24
Q

How many chromosomes does an individual who’s a balanced carrier involving a robertsonian translocation?

A

Balanced carrier has 45 chromosomes

25
What does it mean if an individual has 46 chromosomes including robertsonian translocation?
If 46 chromosomes present including Robertsonian then must be unbalanced
26
What do p arms encode?
p arms endoe rRNA
27
What does a 21;21 robertsonian translocation lead to?
leads to 100% risk of Down syndrome in fetus
28
What is the centromere?
Part of the chromosome which attaches to the spindle during cell division
29
What is the only way a chromosome can be made stable if the end of the chromosome is lost?
If the end of the chromosome is lost then the only way the chromosome can be made stable is if a new telomere is added -Without the telomere the cell will die
30
What do interstitial deletions in chromosomes result in?
- Prader-Willi - DiGeorge syndrome - Cri du chat
31
What are inversions?
Where there are two breakpoints within the same chromosome and when these are repaired the middle section is “upside down”
32
What is a ring chromosome?
Where you get two breaks in the same chromosome and that non-homologous end joining mechanism joins the two ends of the large chunk together, resulting in a ring
33
What do deletions cause a region of?
Causes a region of monosomy
34
What can gross deletions be seen on?
Gross deletions seen on metaphase spread on G-banded karyotype
35
What can show micro deletions that traditional approaches can't?
High resolution banding, FISH and now CGH showed ‘micro’ deletions
36
What is contiguous gene syndrome?
Only a few genes may be lost or gained
37
What can unequal crossing over lead to?
Unequal crossing over can lead to these microdeletions and microduplications
38
What does array-CGH look at?
Looks at dosage
39
What are the steps involved in array-CGH?
1. Take healthy individual and affected individual DNA 2.These anneal to probes on glass array - Should be equal hybridisation - If both patient and control have two copies of a region (disomic) – 5 probes will have patient DNA and 5 will have healthy DNA = DOSAGE WILL BE EQUAL - If there is a microdeletion/microduplication in patient DNA i..e two copies in healthy DNA and one in patient DNA : - Dosage will be different - Hybridisation will be unequal