databases Flashcards
(12 cards)
def of a database
a collection of related data
–> data; known facts
–> implicit meaning, suggested/understood without being directly stated
–> assume computerized
–> structured, some degree of interaction
–> built with a perpose
wat is an other word for tables in a DB
data types
each table has several; info
records
a type is described by several;
attributes
one of the attributes can be seen as the main one
the key identifier
related data records are linked through:
foreign keys
welke DB vallen er onder de NCBI
NCBI = national center of biotechnology info
- genbank: all sequences
- refseq: clean, non-redundant seq
- unigene: mRNA
- protein: prot
welke DB vallen er onder EBI
EBI = european bioinformatics institute
- EMBL- bank: all seq
- uniprot: prot
welke DB vallen onder NGI
- DDBJ: DNA data bank of japan
wich orgasm specific seq databases
- SGD: Saccharomyces Genome Database
- TAIR: The Arabidopsis Information Resource
- FlyBase: fruitvliegje
databases containing a specific type of seq
- Repbase: repeats
- MiRBase: miRNAs
- EPD: promotors
- UniVec: vectors