Exam 1 CH 1-7 Flashcards

(46 cards)

1
Q

Describe the evolution of drug resistance

A
  • the rate of mutation in bacteria is very slow
  • as bacteria evolve (conjugation) there are gains and losses of the genetic material
  • drug resistance occurs when there is high amounts of the drug being used and the treatment isn’t finished because the bacteria evolve to have these resistance to these type of antibiotics
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2
Q

What does it mean by proximate causes in relation to biological phenomena?

Example: song of a male marsh warbler

A

Mechanism or structure

Example: brain structure in the 2 songs

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3
Q

What does it mean by ultimate causes of biological phenomena?

Example: song of a male marsh warbler

A

Evolutionary drivers and history of events

Example: natural selection (reproductive success)

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4
Q

What is Carolus Linnaeus known for?

A

Linnaeus is known for the binomial system in assigning scientifc names to species

(father of taxonomy)

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5
Q

Apiaceae Daucus carota

Label it

A

Apiaceae (Family)

  • Daucus* (Genus)
  • Daucus carota* (Species)
  • carota* (specific epithet)
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6
Q

What are the 5 components of Darwin’s theory of evolution?

A
  1. Evolution (not the first to come up with the theory)
  2. Common descent (common ancestor of all species)
  3. Gradualism (evolved by small steps over several generations)
  4. Populational change (proportions of variants within a population)
  5. Natural selection (he came up with the mechanism for evolution/accounts for adaptations-fitness features)
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7
Q

What is the difference between a theory and a hypothesis?

A
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8
Q

How are phylogenetic trees inferred?

A

By characters or traits

  • The fact that they are genetically based and can be passed on to offspring (heritable
  • Character states: petal number (3, 4, 5)
  • Homology (homologous characters): states shared by two or more species
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9
Q

What are the three main types of characters or traits from how a phylogenetic tree is inferred?

A
  1. Homologous characters
  2. Orthologous genes (genes that diverge from a common ancestral gene)
  3. Paralogous genes (genes that originate from an ancestral gene duplication)
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10
Q

Is a phylogenetic tree a hypothesis or a theory?

A

Hypothesis

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11
Q

What are the patterns of evolutions of characters?

A
  1. Modified from pre-existing features
  2. Different rates (mosaic evolution)
  3. Gradualism
  4. Homoplasy is common (convergent evolution)
  5. Describe patterns of diversification (adaptive radiation)
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12
Q

What is artificial selection?

A

Select indvidiuals with the most desirable trait and cross-breed to produce the next generation. If the trait is genetically-based and passed down to progeny, the next generation will have a higher proportion of individuals with the trait.

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13
Q

What is natural selection?

A

Differential survival/reproductive success (higher fitness) of individuals with that feature in a population

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14
Q

What is an adaptation?

A

Feature that becomes selective advantage in a population

After several generations, the feature becomes prevalent in the progeny over time

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15
Q

Why doesn’t natural selection selectively pick out the beneficial features in a population as compared to the deleterious mutations?

A
  • Natural selection is not an active power (not forethought)
  • Describes the way of the process (metaphorical expressions)
  • For statistical differences in reproductive success
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16
Q

What are Darwin’s 4 postuales of natural selection?

A
  1. Individuals within species are variable
  2. Some of these variations are passed on to offspring
  3. In every generation, more offspring are produced than can survive
  4. The survival and reproduction of individuals are not random; the indviduals who survive and go on to reproduce the most offspring are those with the most favorable variations, and they are naturally selected
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17
Q

How to test hypothesis of adaptation?

A

Why did a lineage become “fixed” for a derived character state and lost the ancestral state?

A valid hypothesis must include: specifies a trait and a biological function (must be specific)

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18
Q

What is an exaptation?

A

A trait that originally evolved for one function but was later co-opted for a different function

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19
Q

Label where would selective regime be and adaptation

Also, are the phylogeny and placement of selective regime and adaptation consistent with our hypothesis?

A

Dorsal scapula speciation mark (adaptation)

Selective regime (hunting for food/throwing ability) to humans only

No, because improved throwing ability (selective regime) evolved after dorsal scapulae adapation, which makes this an exaptation.

*Adaptation evolves after selective regime

20
Q

How to infer the adaptive significance?

A

By the use of the comparative method

-determine ecological or other selective factor with which it is correlated

21
Q

What is the comparative method and what is it mainly used for?

A

Comparing sets of species to pose or test hypotheses on adaptation and other evolutionary phenomena

-convergent evolution

22
Q

What is an evolutionary trade-off?

A

The existence of both a fitness benefit and a fitness cost of a mutation or character state

23
Q

Why did a certain trait evolves?

A

The adaptation is better than the ancestral character

24
Q

What would a trait not be an adaptation?

A

Consequence of physics or chemistry (red blood cells)

-consequential feature may serve a function

Evolved by other mechanims (genetic drift or gene flow)

May have evolved because of genetic correlations

-genetic linkage and pleiotropy

25
What is character displacement?
Divergence of species as a consequence of their interaction
26
How can character displacement lead to greater biodiversity? Example: Galápagos ground finches
Variation in bill sizes adapted to different seed sizes -Competition among the species affects what kinds of seeds a species eat
27
How many chromosomes in a human genome?
1. 23 pairs 2. 22 pairs of autosomes 3. 1 pair of sex chromosomes
28
Where are other locations of DNA?
1. Mitochondrial genome 2. Chloroplast genome (in plants) 3. DNA/RNA ss/ds in viruses
29
What are genes?
Segments of chromosomes that perform a function (coding DNA=proteins) 2% of the human genome
30
What is a codon?
A set of three bases that code for an amino acid
31
What are synonymous mutations?
Syn (same) -do not alter the amino acid meaning
32
What are nonsynonmous mutations? Consider to be deleterious
Alters the amino acid meaning -Harmful to the cell
33
How are some phenotypic variation not based on genotypic variation?
Through environmental changes such as temperatures, light, or nutrients
34
What are the conditions for the Hardy-Weinberg Equilibrium? \*Evoultion is **_not_** occuring
1. Infinite population size 2. 0 Natural Selection 3. 0 Mutation 4. 0 Movement (migration) between populations 5. Random mating
35
What is the H-W equilibrium equation?
p2+ 2pq + q2 = 1
36
What are the different types of genetic variation inheritance?
Indepedent Assortment/Segregation during Meiosis Recombination (Crossing-Over) Linkage Disquilibrium
37
What is linkage disquilibrium?
When an allele at one locus is found together in a population more often than expected by chance with an allele at a second locus
38
What is associated with linkage disequilibrium?
Epistasis
39
What is epistasis?
The situation in which the effect of an allele at one locus depends on the allele at a second locus Mechanism to avoid fertilizing itself
40
Which occur at a higher frequency (transitions vs transversions) and why?
Transitions happen at a higher frequency Converting an Adenine to a Guanine and vice versa (same nucleotide group) -purines--\>purines
41
What are the 5 types of structural mutations that alter chromosomes?
1. Deletion (insertion as well) 2. Duplication 3. Inversion 4. Fission 5. Fusion
42
Excluding virsues what is the trend of mutation rates in organisms?
Organisms with larger genomes tend to have higher mutation rates per base pair per generation
43
What is pleiotropy?
Occurs when a single muation affects multiple traits Ex: achondroplasia
44
In the vast majority of muations, are these mutations positive or negative?
Most have negative effects (deleterious)
45
Why do synonymous mutations have 0 effect on fitness?
Very few mutations are beneficial (with positive selection coffecients)
46
Does natural selection favor syn or nonsynonmous mutations? And why?
Favors lower mutations rates (maintained fitness in syn/under constraint), positive selection Nonsynonmous mutations (increase in gene pool diversity), negative selection to occur (harmful to the cell)