Exam 2 Flashcards

(115 cards)

1
Q

Define cytology.

A

The study of cells

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2
Q

Distinguish among extracellular fluid, interstitial fluid and intracellular fluid.

A

Extracellular fluid (ECF) is outside of the cells. Interstitial fluid is between the cells, in tissue spaces and intracellular fluid (ICF) is inside the cells.

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3
Q

Describe the composition/charge difference of the ICF compared to the extracellular environment (ECF).

A

Intercellular fluid has high potassium (k+) inside. Inside is (-) compared to the outside in extracellular fluid, which is (+). It has many (-) charged proteins, fewer positive molecules/ions. Has Cytoskeleton, carbs, lipid storage, inclusions and organelles. Extra

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4
Q

Be able to describe the importance of cell division.

A

Cells divide to help with growth, development, and tissue repair. Its like a while process called the cell cycle, where the cell gets ready for division and then actually divides into two identical cells. During division, the nucleus divides in a process called mitosis, and then the rest of the cell splits in cytokinesis.

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5
Q

Be able to list the phases of the cell cycle in the proper order.

A

Interphase: G1 phase, S phase, G2 phase

M (mitotic) phase: mitosis (prophase, metaphase, anaphase telophase, cytokinesis.

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6
Q

Distinguish between interphase and M-phase. List the subdivisions in each (in order).

A

G1 phase, where the cell grows and carries out its Normal function
S phase, where DNA replication occurs and the cell makes a copy of its genetic material.
G2 phase, where the cell continues to grow and prepares for division.

M-phase, also known as the mitotic phase, is the actual division phase. It consists of two subdivisions:
Mitosis, wich includes prophase, metaphase, anaphase and telophase. During mitosis, the nucleus divides.n
Cytokinesis, where the rest of the cell, such as the cytoplasm and organelles, divides to form two separate cells.

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7
Q

Define mitosis and cytokinesis.

A

Mitosis: nucleus divides, each daughter cell gets 1 complete set of DNA. Cytokinesis: Cytoplasm with organelles divides.

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8
Q

Describe the events that take place during G1, S and G2 phase.

A

SO, in a nutshell, G1 is about growth and normal functions, S is about DNA replication, and G2 is about final preparations. It’s all part of the cells journey towards division. Generally, it can range from a few hours to several days.

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9
Q

Describe the process of DNA replication/duplication that occurs in S phase.

A

During the S phase, DNA replication occurs. Its like the cell making a copy of its genetic material. Imagine it as the cell creating a duplicate of its instruction manual, so it has an extra set of all the important information. This replication process ensure that each new cell formed during division will have a complete set of DNA. Its like having a backup plan for the cells genetic code!

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10
Q

Be able to describe what semi-conservative replication is.

A

So, semi-conservative replication is a fancy term for the way DNA replicates itself. Its like a clever recycling system! During replication, the DNA molecule splits into two strands, and each strand serves as a template for the creation of a new complementary strand. So, in the end, you have two new DNA molecules, each with one original strand and one newly synthesized strand. Its like keeping half of the old DNA and adding half of the new DNA to create a perfect blend.

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11
Q

Prophase:

A

this is like the preparation phase. The chromosomes condense and become visible. The nuclear envelope starts to break down, and the spindle fibres begin to form.

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12
Q

Metaphase:

A

this is where the action happens. The chromosomes line up in the middle of the cell, forming whats called the metaphase plate. The spindle fibres attach to the centromeres of each chromosome. Its like a neat lineup of chromosomes, ready to be divided.

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13
Q

Anaphase:

A

time for separation. The sister chromatids of each chromosome separate and are pulling towards opposite ends of the cell by the spindle fibres. Its like the chromosomes getting pulled apart.

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14
Q

Telophase:

A

things start to wind down. The chromosomes reach the opposite ends of the cell and a new nuclear envelope starts forming around each set of chromosomes. Its like the chromosomes finding their new homes and getting cozy

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15
Q

Cytokinesis:

A

the final act. The cell membrane pinches in, dividing the cytoplasm into two separate cells. Each cell has its own nucleus and complete set of chromosomes. Its like there cell splitting into two, ready to start a new chapter.

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16
Q

Describe the cleavage furrow.

A

The cleavage furrow is like a little groove that forms during cytokinesis. Its like a tiny indentation that appears in the cell membrane as the cell divides. Picture it as a little pinch or a crease that gradually deepens until the cell separates into two.

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17
Q

DNA

A

its like the master blueprint of life. DNA carries all the genetic information in our cells. Its made up of a long sequence of nucleotides, which are like the building blocks of DNA

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18
Q

Genes

A

Think of genes as specific sections of DNA. They contain instruction for making proteins, which are essential for various functions in our bodies. Genes determine our traits and characteristics, like eye colour or height. Each gene has a specific location on a chromosome.

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19
Q

mRNA

A

mRNA or messenger RNA, is like a courier that carries the genetic instructions from the DNA too the protein-making factories in our cells called ribosomes. Its like a copy of the genes instructions that can easily transported.

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20
Q

Amino acids

A

these are the building blocks of proteins. There are 20 different types of amino acids, and they links together in a specific sequence dictated by the mRNA. Its like putting a unique sequence of lego blocks to create different proteins.

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21
Q

Proteins

A

proteins are like the workhorses of our cell. They perform various functions, like enzymes that speed up chemical reactions or structural proteins that give cells their shape. The sequence of amino acids determines the structure and function of the protein.

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22
Q

Be able to discuss how the following are related to one another: DNA, genes, mRNA, amino acids, protein.

A

n a nutshell, DNA contains genes, genes are transcribed into mRNA, mRNA guide the assembly of amino acids, and amino acids come together to form proteins. Its like a fascinating chain of events that ultimately leads to creation of proteins, which are vital for life.

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23
Q

Transcription

A

is the process where genetic information from DNA is copied in mRNA. It occurs in the nucleus of eukaryotic cells.

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24
Q

Translation

A

is the process where mRNA is used as a template to build a protein. It takes place in the ribosomes, which can be found in the cytoplasm of both eukaryotic and prokaryotic cells.

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25
Describe the difference between the states of the DNA of genes that are active (expressed) vs. inactive (not expressed).
Although all cells have the same DNA with the same genes, not all genes are expressed or turned into proteins. The state of DNA is active genes, is open and accessible, allowing transcription factors and RNA polymerase to bind and initiate transcription. In inactive genes, the DNA is tightly packed and inaccessible, preventing gene expression. So, the difference lies in the accessibility of the DNA
26
Explain how transcription of the template strand is initiated, how the mRNA is elongated, (ie. complementary base pairing) and how transcription is terminated.
So, transcription starts with the promoter, builds the mRNA using complementary base pairing and ends at the terminator. Its like writing out a sentence, with the DNA providing a script.
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The cell
Cell theory: based on Robert Hooke’s research - Cells are the building blocks of all plants and animals. – All cells come from the division of preexisting cells – Cells are the smallest units that perform all vital physiological functions – Each cell maintains homeostasis at the cellular level
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Cytoplasm
intracellular fluid (cytosol) + organelles
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Nucleus:
controls cellular activities
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Plasma membrane
barrier
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Cellular environment
Fluid in compartments: movement between compartments
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Extracellular fluid (ECF)
outside of cells – Interstitial fluid (between cells, in tissue spaces) – Blood plasma, lymph, cerebrospinal fluid
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Intracellular fluid (ICF)
inside of cells – Cytosol with nutrients, ions, proteins, wastes
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ICF vs. ECF
• Intracelluar fluid (inside cell) – High potassium (K+) inside – Inside (-) compared to outside (+) • Many (-) charged proteins • Fewer positive molecules/ions – Cytoskeleton – Carbs, lipid storage, inclusions – Organelles • Extracellular fluid (outside cell) – High sodium outside (Na+) – Extracellular matrix
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The nucleus
• Largest organelle (10% total cell volume) with nuclear membrane, nucleoplasm, nucleolus, pores • Genetic library of DNA (chromatin, chromosomes): genes containing genetic code – Directs synthesis of RNA, proteins • Control center: cell structure /function – What, where, when, how much protein made
36
G1
• G = gap We will assume preparing to divide: • Lasts about 8-10hr • Environmental monitoring • Cell grows • Makes new organelles and other structures for replication – Starts to copy centrosome so have 2 pairs centrioles later – Need them for mitotic spindle production
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S- phase
• DNA synthesis/duplication (~8hr) • Goal: make another copy of all DNA molecules – need 2 complete sets for 2 identical daughter cells • Many enzymes involved • Unwind DNA to separate the DNA strands and copy
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DNA replication in S phase
• Two identical DNA molecules formed from original DNA • Semi-conservative replication: 1 old and 1 new strand/ final DNA molecule • New DNA rewinds around histone proteins • Important that new DNA is not damaged or broken!
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Semi-conservative replication
1 old and 1 new strand/ final DNA molecule
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G2
• After S phase, before mitosis (~4-6hr) • Monitoring environment • Cell growth continues • Final preparation • Centrosome replication complete: 2 pairs of centrioles for mitotic spindle production!
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Mitosis
nucleus divides, each daughter cell gets 1 complete set of DNA! – Continual process!...0.5 -1.5 hrs – Stages: PMAT – Vocab: Chromatin, chromosome, chromatids
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Cytokinesis
Cytoplasm with organelles divides – Begins in late anaphase+
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DNA
genetic instructions
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Gene
segments of DNA code for RNA→ protein
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Overview: From DNA to protein
• DNA directs its own replication -we saw that during interphase! • DNA directs protein synthesis (we will see this now!), but too big to leave nucleus • So- mRNA made, carries protein coding message to cytoplasm • Protein made in cytoplasm • DNA: genetic instructions – Gene: segments of DNA code for RNA→ protein • DNA → mRNA (transcription) – Nucleus • mRNA → protein (translation) – Cytoplasm, ribosomes
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Inactive genes
DNA supercoiled not easily accessed
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Active “expressed” genes
DNA uncoiled, exposed for transcription of mRNA
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Transcription (DNA→ mRNA)
• Remember nucleotides? Read as 3 nucleotides (base triplet) • 1 DNA triplet → 1 mRNA codon → 1 amino acid • DNA: 2 strands, in transcription- • Template DNA strand – Transcribed strand, contains gene’s promoter “start sequence” • Coding DNA strand – Not transcribed, has same code as mRNA built except U not T
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Template DNA strand
Transcribed strand, contains gene’s promoter “start sequence”
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Coding DNA strand
Not transcribed, has same code as mRNA built except U not T
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Initiation
– DNA is unwound – RNA polymerase binds DNA promoter on template strand (contains gene) – RNA polymerase begins to make new RNA polymer
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Elongation
– RNA polymerase moves along DNA template and assembles mRNA – Complementary base-pairing: H bonds between template DNA and new mRNA (U not T!!) – Covalent bonds between mRNA ribonucleotides – 1 DNA base triplet transcribed into 1 codon (mRNA -3 ribonucleotide sequence)
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Termination:
At end of gene: stop/termination signal • special nucleotide sequence - RNA polymerase released - pre-mRNA transcript released
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RNA processing of pre-mRNA
• Result of transcription: pre - mRNA transcript produced (AKA primary transcript) – Many codons long – But –immature and can’t leave nucleus yet! • Pre-mRNA transcript – Contains: • Exons: coding regions, codes for proteins: KEEP • Introns: non-coding regions, does not code for proteins: REMOVE
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Exons
coding regions, codes for proteins: KEEP
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Introns
non-coding regions, does not code for proteins: REMOVE
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RNA processing before exits nucleus
• Splicing: cut out mRNA introns, connect exons – Note: it isn’t always this easy ☺ • Capping • Poly A tail
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Splicing
cut out mRNA introns, connect exons – Note: it isn’t always this easy ☺
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Protein synthesis: translation mRNA→protein
• Translation: – 1 codon on mRNA translated into 1 amino acid in protein – Purpose: make a specific polypeptide protein – Location: ribosomes • Free: in cytosol • Bound: to organelle membrane (ie. RER)
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Reading the genetic code
• We started with a base triplet (3 nucleotides -DNA) • We made a complementary codon (3 ribonucleotides - mRNA) • 1 codon translates into 1 amino acid – Each amino acid can be specified by >1 codon • Polypeptides (proteins) made from combination of 20 amino acids
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mRNA→protein: who are the players?
• mRNA transcript with codons • tRNAs: picks up amino acids from cytoplasm, “transfers” to ribosome – Anti-codon of tRNA: binds complementary mRNA codon – Amino acid attached at other end of tRNA, transferred to growing peptide • Ribosome: “reading machines” – Made of rRNA
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Translation: Initiation
• Ribosome binds mRNA sequence near mRNA cap • Finds start codon: AUG • Initiator tRNA (with anti-codon UAC and special aa “MET”) binds to start codon
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Translation: Elongation
• Additional amino acids added – Another tRNA (with anti-codon and attached aa) pairs with next codon – Ribosome links the amino acids of the tRNA by peptide bond – mRNA moved through ribosome – After tRNA transfers aa, empty tRNA falls off and is “recharged”
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Translation: Termination
• Elongation continues until “Stop” codon (UAA, UAG, UGA) signals termination • Polypeptide protein released • Protein can’t function yet, must fold correctly first! • Polyribosomes: – Multiple ribosomes translate same mRNA in succession – More protein made in shorter time!
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When things go awry…
• Mutations: permanent changes in a cell’s DNA • Nucleotide sequence change→ mRNA change → can change amino acid sequence → can change protein’s function • With DNA mutation can affect protein structure – Structure dictates function! – Without normal structure, protein can’t function normal
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Cell (plasma) membrane functions
• Physical barrier: intracellular and extracellular, covers, protects cell • Gatekeeper: regulates exchange with environment: ions, nutrients, waste • Environmental sensor: monitors environment, ECF composition, chemical signals, cell communication • Structural support: anchors cells to other cell, ECM
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Plasma membrane composition
• Lipids – Phospholipids – 2 layers! – Cholesterol – Glycolipids • Proteins – Proteins – Glycoproteins • Membrane is asymmetrical
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Plasma membrane fluidity
• Fluid mosaic model: membrane structure – Sea of phospholipids, protein “icebergs” and islands: mosaic – Phospholipid and proteins interact, move side to side: fluid • Circular membrane held together by weak hydrophobic interactions – Hydrophobic non-polar fatty acid tails of phospholipids • Fluidity influenced by various factors
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Plasma Membrane Lipids
• Phospholipid bilayer (2 layers!) – Polar hydrophilic head – Non-polar hydrophobic tails – Barrier to most polar/charged/large molecules • Cholesterol – Strengthens membrane – Maintains membrane stability with temp changes
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Plasma membrane “accessories”
Accessories with carbohydrates • Glycolipids: lipid with carb • Glycoproteins: protein with carb • Glycocalyx: Carb portion is ”coating of sugar” on cell surface – Lubrication/protection – Anchoring/locomotion – Recognition (self): signature ID tags
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Glycolipids
lipid with carb
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Glycoproteins
protein with carb
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Glycocalyx
Carb portion is ”coating of sugar” on cell surface – Lubrication/protection – Anchoring/locomotion – Recognition (self): signature ID tags
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Plasma membrane protein types
1. Peripheral: loosely bound on one side of membrane 2. Integral: usually span entire membrane width (transmembrane proteins) – Hydrophilic and hydrophobic parts – Some are glycoproteins
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Peripheral proteins
loosely bound on one side of membrane
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Integral proteins
usually span entire membrane width (transmembrane proteins) – Hydrophilic and hydrophobic parts – Some are glycoproteins
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Functions of membrane proteins
• Similar lipids in cell membranes • Different membrane proteins- give cells unique functions • Some functions of membrane proteins: – Transport – Attachment – Receptors
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Transport: integral proteins
– Ion channel: specific ions • Hydrophilic part lines channel – Carrier: specific solutes bind (glucose) • Some do not require energy • Some do: ATP powered pumps-require ATP
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Attachment (integral or peripheral)
– Maintain cell shape, position; membrane protein position – Inside bound to cytoskeleton – Outside bound to: • ECM • Other cells: cellular junctions
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Receptors: integral proteins
– Bind ligands (chemicals) • Hormones (Insulin to insulin receptor) • Neurotransmitter to muscle cell • Triggers cell change – Some receptors linked to channel proteins • “Ligand gated” channel- channel opens/closes • Changes membrane permeability
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Plasma membrane
barrier between cell cytosol (inside) and interstitial fluid (outside ECF
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Intracellular
more K+, enzymes/proteins, glycogen, has organelles
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Extracellular
more Na +, Ca 2+, and Cl-
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Plasma membrane permeability
• Permeability: how easily substances move through a membrane • Plasma membrane is selectively permeable: some substances cross more easily than others – Maintain differences across membrane – Result of lipid and protein distribution in membrane – Maintains internal order despite changes outside cell- “homeostasis”!
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Permeability
how easily substances move through a membrane
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Plasma membrane is selectively permeable
some substances cross more easily than others
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Transport processes
• Passive transport: NO energy used, move across from higher to lower concentration – Simple diffusion: solutes directly cross membrane – Osmosis: water through membrane or channel – Facilitated diffusion: solutes through specific channel or a carrier molecule, (but no energy is used!!) • Active transport: energy used (ie. ATP) to get across – Primary active transport: • Move substances from lower to higher concentration – Vesicular transport • Membrane bound sacs (vesicles)
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Passive transport
NO energy used, move across from higher to lower concentration
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Simple diffusion
solutes directly cross membrane
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Osmosis
water through membrane or channel
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Facilitated diffusion
solutes through specific channel or a carrier molecule, (but no energy is used!!)
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Active transport
energy used (ie. ATP) to get across
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Primary active transport
Move substances from lower to higher concentration
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Vesicular transport
Membrane bound sacs (vesicles)
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Diffusion
solute moves from area of higher solute concentration to lower concentration (down its concentration gradient) • Driving force: high speed motion of atoms and collisions – Collisions occur more in crowded (concentrated) area • No energy needed: Diffusion is ALWAYS passive • But! remember cell has selectively permeable plasma membrane = barrier
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Simple diffusion
move freely through plasma membrane down concentration gradient – Remember hydrophobic core = barrier – Small, nonpolar, lipid soluble substances move through easily • Diffusion rate increases with: – Shorter diffusion distance – Increased lipid solubility • Lipids, steroids, FA cross – Smaller size – Steeper concentration gradient – Higher temperature – Increased surface area • Physiological relevance?
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Facilitated diffusion
Channel or carrier integral membrane proteins help (facilitate) small polar, charged or large molecules – PASSIVE: no energy needed – Must travel down their concentration gradient – Specific: interaction with protein transporter – Channels for ions (leak or gated), H20 – Carriers: can become saturated • All seats filled!
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Osmosis
movement of water (solvent) across semi-permeable membrane
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Osmolarity
total solute concentration in solution
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Osmosis
• Osmosis: movement of water (solvent) across semi-permeable membrane • Osmolarity: total solute concentration in solution • If total solute concentration differs between 2 compartments (like across membrane) water concentration differs too – Water moves from high water (low solute) to low water (high solute): • Some directly through PM • Most through aquaporins (H20 channels) – Cell remains same size
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Osmotic pressure
tendency of water to move in or out of cell (or solution in a compartment) by osmosis, pulling force solute has on water – Water moves from high to low H20 conc., moves towards more solute • Side A above with more solute/less H20 has higher osmotic pressure • Higher non-moving [solute]= higher osmotic pressure • Water moves towards higher osmotic pressure (towards higher solute) • In normal body conditions: osmotic pressure inside cell =outside cell
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Osmosis in physiology
• Isotonic solution (normal condition) *inside and outside cell = 2 compartments! – Same solute conc. in outside solution vs. inside cell (same osmotic pressure)- cells do not shrink or swell – No net osmotic flow – Cell maintains “tone” • Hypotonic solution – Less solute in outside solution vs. inside cell – Water flows into cell toward higher solute – Cells swell: can burst • Hypertonic solution – More solute outside than inside cell – Water flows out of cell towards higher solute – Cell shrinks
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Isotonic solution
(normal condition) *inside and outside cell = 2 compartments! – Same solute conc. in outside solution vs. inside cell (same osmotic pressure)- cells do not shrink or swell – No net osmotic flow – Cell maintains “tone”
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Hypotonic solution
– Less solute in outside solution vs. inside cell – Water flows into cell toward higher solute – Cells swell: can burst
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Hypertonic solution
– More solute outside than inside cell – Water flows out of cell towards higher solute – Cell shrinks
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Fluid shifts and water balance
• Remember! Water moves to compartment with more solute • Dehydration • Overhydration (“Water intoxication”) • Don’t drink salt water if stranded at sea! Why?
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Active transport: not so easy
• Movement of solute from low to high concentration (against gradient) or vesicle involved: primary or vesicular transport – Uses energy • Primary active transport – Energy required: ATP used directly – Carrier protein needed: ion pumps – Move ion/molecule against/up concentration gradient (low to high) • Make gradient even higher • Na+, K+, Ca2+ ,Mg2+ ,Cl- • Can transport 1 or >1 ion at time – Transport influenced by: • Pump number • ATP supply
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Primary active transport example!
• Na+ /K+ exchange pump: Most important to cell! – Example of ion exchange pump – This one transports > 1 ion, in opposite directions – Moves ions against concentration gradient • 3 Na+ out for 2 K+ in – Requires ATP hydrolysis (energy source) – Maintains HIGH extracellular Na+ and HIGH intracellular K+ – CRITICAL for homeostasis
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Gradients across the membrane
• These transport processes create/maintain differences across membrane • Electrochemical gradient : electrical & chemical difference across the membrane – Result of membrane selective permeability and transport processes – Represents stored energy – Components: Gradients across the membrane • Electrical gradient: Transmembrane potential – Resting membrane potential of cells: negative inside – Due to more – charged proteins and fewer + charged ions in cell • Concentration (chemical) gradient: ie. more Na+ outside and more K+ inside
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Vesicular transport (bulk transport)
• Materials move into or out of cell in sacs that bud off membranes (vesicles) • Requires ATP • Types: – Endocytosis: substance brought from outside to inside cell • Phagocytosis • Pinocytosis – Exocytosis: substance released from inside to outside cell
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Endocytosis
substance brought from outside to inside cell • Phagocytosis • Pinocytosis
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Exocytosis
substance released from inside to outside cell
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Endocytosis
• Vesicle formation requires energy • Phagocytosis: – “cell eating”: large particles – Select cells: phagocytes – Surrounds with pseudopods • Forms vesicle: phagosome • Digests when fuses with lysosome • Pinocytosis: – “cell drinking”: small vesicles – Bring in interstitial fluid with dissolved molecules – Most cells capable
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Endocytosis
• Receptor-mediated endocytosis – Very selective! • Substance brought in must binds specific receptor on surface of cell – For example: cholesterol uptake from blood into cell
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Exocytosis
• Vesicle fuses with plasma membrane – requires energy • Contents released (secreted) – Secretion of hormones, digestive enzymes, neurotransmitters • Helps to also recycle and replace membrane to balance endocytosis