Exam 2 Flashcards
(91 cards)
molecular structure of class II MHC
- found on antigen presenting cell
- possess Ig domains
- are heterodimeric (alpha and beta chain)
- Both chains pass through the plasma membrane
- A peptide-binding cleft is formed by the pairing of alpha1 and beta1 domains.
class I MHC
- Ig domains
- found on all nucleated cells
- larger alpha chain with three external domains
- Beta 2 microglobulin domain (like a3 domain and single transmembrane domain)
what methods do MHC molecules use to increase their diversity of antigen presentation?
Class I and II molecules exhibit polymorphism in the peptide-binding region with several hundred different allelic variants expressed in humans. Up to six different class I molecules and 12 different class II molecules can be expressed per person. A given MHC molecule can bind numerous different peptides, and some peptides can bind to several different MHC molecules
MHC class II peptide binding groove
- longer
- 13-18 amino acids
- conserved residues
- entire peptide is at constant elevation (no bulge) due to open MHC ends
MHC class I peptide binding groove
- shorter
- 8-10 amino acids
- hydrophobic anchor residues
- peptide bulge in the middle because of the closed ends
how do MHC alleles play a role in health, disease, and mate selection?
Cheetah’s and Florida black panthers have increased viral susceptibility due to limited MHC polymorphism. Native Americans devastated by the introduction of smallpox. Tasmanian devils are highly susceptible to a deadly form of cancer missing MHC I that is spread by biting.
MHC alleles occur at a much higher frequency in people suffering from certain diseases than in the general population including autoimmune diseases, viral, and allergies. There is some evidence that MHC affects mate choice - odor for MHC-dissimilarity enhances attraction for mate choice. It is possible we have evolved to be more attracted to MHC diverse individuals.
what cells are MHC class II
found on antigen presenting cells
cells with MHC class I proteins
Ig domains, found on all nucleated cells
Describe the Nobel prize winning experiment demonstrating self-MHC restriction of CD8 T cells.
Rolf Zinkernagel and Peter Doherty used mice to study how T -lymphocytes could protect animals against infection from a virus. Infected mice developed killer T-lymphocytes were reactive against that virus but were not able to kill virus-infected cells from another strain of mice. Thus, they demonstrated the requirement for the cellular immune system to recognize simultaneously both ‘foreign’ molecules (e.g. virus) and presented by self-molecules (MHC).
immunoproteosome
temporarily expressed in infected cells or activated professional APCs
- cleaves proteins into fragments that are optimized for MHC I presentation resulting in improved peptide presentation
- turns over quicker than the constitutive proteosome, likely to help prevent autoimmunity.
constitutive proteasome
Cytoplasmic intracellular proteins (MHC I presented peptides) are processed by the endogenous pathway and are generated by protease complexes
TAP in antigen processing and presentation for MHC class I molecules
essential for transporting peptides from the cytosol to the rough endoplasmic reticulum (RER).
HLA-DM molecules in antigen processing and presentation
exchanges CLIP (a small portion of the invariant chain) out of the groove for a peptide fragment
endogenous antigen processing and presentation
Peptides from cytoplasmic intracellular proteins are generated by proteasomes or immunoproteasomes. Peptides are transported from the cytosol to the rough endoplasmic reticulum (RER). TAP molecules in the RER membrane move the fragments. Peptides are loaded onto the MHC class I molecules in the RER.
exogenous antigen processing and presentation
Extracellular antigen peptides are generated from internalized antigens in endocytic vesicles. Endosomes are fused with lysosome and degraded. Simultaneously, MHC class II molecules are produced and exported from the ER in vesicles. It takes 1- 3 hours for antigen to be processed and presented on the cell surface.
What is cross presentation and why is it important?
Cross-presentation is the ability of certain APCs (predominantly DCs) to take up, process and present extracellular antigens with MHC class I molecules to naïve cytotoxic T cells. Cross-presentation permits the presentation of exogenous antigens, which are normally presented by MHC II, on the surface of uninfected dendritic cells by MHC I. This is important since some viruses or tumors do not normally infect APCs and could avoid immune detection. This may require dendritic cell interactions with helper cells first (Dendritic cell licensing).
Describe the stages and location of T cell development.
- bone marrow = very early thymocyte development
- thymus = four double negative (no CD4 or CD8) and then double positive
- peripheral bloodstream = after positive selection they become single positives
What is the importance of Notch1 ligand to bone marrow cell development?
When cells arrive at the thymus, they aren’t technically T cells. They can also become NK cells,
dendritic cells, B cells, and even myeloid cells. A receptor on cells known as Notch1 commits them to
the T lineage. Notch1 binding can commit cells to T lineage even without the thymus being present.
If Notch1 is knocked out lymphoid precursors become B cells instead of T cells!
different molecules involved in development of T cells
C-kit (CD117)—receptor for stem cell growth factor. CD44—an adhesion molecule.
CD25—the α chain of the IL-2 receptor.
double negative 1 developmental stage
migrate to the thymus
double negative 2 developmental stage
T cell lineage commitment and beta chain rearrangement
double negative 3 developmental stage
Expression of pre-TCR and beta chain selection
double negative 4 developmental stage
proliferation, allelic exclusion of beta chain, alpha chain
rearrangement, and progress to DP
How are alpha beta T cells and gamma delta T cells similar and different?
Thymocytes can express either TCRαβ or TCRγδ receptors. TCRαβ outcomes are 3x more likely than
TCRγδ, however, TCRγδ are more common in fetal development. gamma delta T cells provide rapid “innate-like”
defense near the mucosal tissues and skin, bolstering the initial response to microbes. gamma deltaT cells have
less diverse TCR repertoire than αβ T cells and recognize unconventional antigens such as lipids
presented by unconventional MHC molecules.