Exam 2 Correlation Boxes Flashcards
(177 cards)
DNA building block
deoxyribonucleotide
Deoxyribonucleotide
Composed of 2-deoxyribose with base (purine/pyrimidine) at 1’ position & phosphate at 5’ position
(Deoxy)ribonucleoside
Base plus (deoxy)ribose
(Deoxy)ribonucleotide
(Deoxy)ribonucleoside with 1 to 3 phosphate groups Base plus (deoxy)ribose with 1 to 3 phosphate groups
Nucleoside analog inhibitors (blue, p. 324)
Lack 3’-OH –> converted to dNTPs –> inhibit DNA replication
Examples: ara-C, acyclovir, AZT
Ara-C (arabinosylcytosine, cytarabine)
Nucleoside analog inhibitor containing the sugar arabinose
Animal cells convert to ara-CTP –> comp inh of DNA pol
Treats leukemia
Acyclovir (acyloguanosine)
Nucleoside analog inhibitor
Herpesvirus-encoded thymidine kinase catalyzes phosphorylation –> host enzymes convert mono-P –> tri-P
Lacks 3’-OH group, acts as chain terminator in DNA synth
AZT (azidothymidine)
Nucleoside analog inhibitor used in HIV therapy
Taken up by HIV-infected cells –> activated –> utilized by viral reverse transcriptase (RNA-dependent DNA pol)
Lacks 3’-OH group, acts as chain terminator in DNA synth
Xeroderma Pigmentosum (p 333)
Defect in NER complex (DNA repair process)
Skin extremely sensitive to sunlight, prone to developing melanomas & squamous cell carcinomas
UV light –> cyclobutane thymine dimers form in DNA (easily repaired in normal people by NER)
Hereditary nonpolyposis colorectal cancers (p 333)
Increased risk w/MER complex gene mutations (MSH2, MLH1)
Mutation in good copy of MER complex gene –> non-functional MER complex –> tumor allowed to develop
Cockayne syndrome (p 334)
Rare autosomal recessive, congenital disorder
Mutations in genes (ERCC6 & ERCC8) that are involved in TCR of DNA; if DNA not repaired –> cell dysfunction and cell death
Developmental and neurologic delay, photosensitivity, progeria; hearing loss/eye abnormalities; death occurs w/in first 20 yrs of life
Type A: ERCC 8, Type B: ERCC 6 (70% of cases)
BRCA associated Breast Cancer (p334)
Mutations in tumor suppressor genes (BRCA1 & BRCA2) –> 5x risk increase in women for breast/ovarian cancer before menopause (inc for men too)
BRCA1: Ass w/higher risk of cervical/uterine/pancreatic/colon cancer in women; pancreatic, testicular, & early prostate cancer in men
BRCA2: inc risk of developing melanoma & pancreatic, stomach, gallbladder, & bile duct cancer in women; pancreatic, testicular, & early prostate cancer in men (more often than BRCA1)
Transcription Factors (p. 341)
Trans-acting proteins that regulate gene transcription across chromosomes
Proteins that bind to many lipophilic hormones (steroid/thyroid hormones, vitamin D)
TF Deregulation (p. 348)
Causes inappropriate in/activation of cell growth genes –> oncogenesis/cancer
Can occur by aberrant increase in expression level or by coding sequence mutations that alter TF activity
TF homo/heterodimers
Can promote/repress transcription of target genes
Bind target sequences on DNA –> recruit other proteins (like RNA Pol)
TF regulatory hydrophilic molecules
Hydrophilic molecules that act at surface of cell via GPCR/receptor tyrosine kinase/receptor-ass kinase
Regulate gene expression, usually involving regulated phosphorylation
DNA-binding domains
Enable transcription factors to bind specific DNA sequences (response elements) in promoter/regulatory gene region
Promoter regions
Located immediately upstream of transcription start site
Regulatory sequences
May resides thousands of kb up/downstream from transcribed gene
Aberrant DNA methylation (p. 348)
Exemplified by FMR1: CGG expansion –> cytosine methylation –> region extends into promoter area –> transcription turned off
Oncogenes
Significantly represented by mutated TF genes
Increased TF expression level
Result of TF misregulation exemplified by an increase in number of gene copies
TF coding sequence mutations
Result of TF misregulation exemplified by loss of phosphorylation site required for regulated shutdown of TF activity
Preproinsulin to mature insulin (p. 363)
20-residue signal peptide cleaved in ER lumen –> pro insulin –> folds to form 2 intramolecular disulfide bridges –> passes through Golgi into beta granules –> cleaved to 33-residue C peptide (leaves behind mature insulin)