Exam 3 Flashcards
(225 cards)
genotype
what genetic info u have
phenotype
what traits you express
genetic information flow (central dogma)
DNA (nucleic acids) –> RNA (amino acids) –> protein
what contains all the info needed to transcribe DNA into mRNA
a gene!
translation of start vs stop codon
- start codon is translated and found within the transcribed region
- stop codon is not translated and is found outside the amino acid sequence (not encoded within the protein)
+1 nucleotide
(indicated often with an arrow)
- indicates the transcription start site and first nucleotide to be transcribed
*not necessarily before the AUG start codon
coding versus template strand
coding 5’ to 3’
template 3’ to 5’
see the codons within the coding strand (look for ATG)
what direction is RNA synthesized?
5’ to 3’ direction of the strand being built
(antiparallel to its complementary strand of DNA)
TEMPLATE = ANTIPARALLEL
CODING = CODONS
gene sequences written/read convention
gene sequences are written/read from 5’ to 3’ of the coding strand
*for a given gene, only 1 strand serves as a template
different genes have different ______
directions of transcription
this is bc different strands of dsDNA are used as the template for different genes (might be coding for one gene but template for another)
RNAP binds ______ to the promoter
upstream and moves downstream toward the rest of the gene
cis and trans elements purpose
recruit RNA polymerase to a gene
cis elements
regions of DNA that are required for gene expression/regulation
*part of the same molecule as the gene(s) they regulate!
trans elements
diffusible molecules (usually proteins) that bind cis elements
*separate molecules from the genes they regulate!
sigma subunit
key trans-factor that helps RNAP associate with promoters
in prokaryotes
many subunits functions together as 1 enzyme
consense sequences
a sequence of DNA having similar structure and function in different organisms.
(same sequence in the same location)
-10 and -35 consensus sequences are found in nearly all bacterial promoters
-35 consensus sequence
TTGACA
-10 consensus sequence
TATAAT
differences in euk. cis/trans factors (3)
1) no sigma subunit
2) different consensus sequences (TATA box most common)
3) additional cis-reg. elements besides promotor (enhancer/silencer) common. Enhancer often required!
termination sequence in prokaryotes
IS transcribed
termination mechanism of transcription
hairpin/stem loop
- complementary base pairing with itself
- strong C-G bonds hold structure together causing the stalling of RNAP
- When stalling occurs, the weak AU bonds cannot hold mRNA and DNA complex together
Rho protein
protein that induces the unwinding of RNA/DNA complex
-transcription termination of prokaryote
splicesome
snRNA and proteins
- functions in recognizing introns and removing them
- recognizes specific sequences in the DNA that will determine the sites of splicing
- via BPing, the RNA component of splicesome recognizes the splice site sequences
- found in nucleus
w/o CAP and Tail, RNA…..
would be degraded