Exam 3 Flashcards

(67 cards)

1
Q

what makes bacteria a fantastic model organism?

A

rapid reproduction, many progeny, small genomes, easy to store in lab

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2
Q

what is horizontal gene transfer?

A

genes shared independent of reproduction

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3
Q

three types of horizontal gene transfer?

A

transformation, transduction, conjugation

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4
Q

what is transformation?

A

take up environmental DNA and recombine

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5
Q

what is transduction?

A

phages and viruses

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6
Q

what is conjugation?

A

two bacterial cells - physical connection

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7
Q

what are the differences and similarities between a host chromosome and a plasmid?

A

chromosome is considered the primary genetic material while the plasmid is additional and can be transferred between cells

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8
Q

what is an episome?

A

a plasmid that can integrate into the bacterial genome

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9
Q

what are the general features of a plasmid?

A

replicates freely of the bacterial chromosome

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10
Q

how is transformation used in the lab?

A

think of pGLO experiment

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11
Q

if you had a spirit organism, would it be a bacterial strain?

A

no

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12
Q

what is the relation of transduction to HCG?

A

the process by which the binding of hCG to its receptor on a cell membrane triggers a series of intracellular signaling events, ultimately leading to specific cellular responses within the cell, like increased hormone production or cell proliferation

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13
Q

what kinds of genetic material do phages/viruses employ?

A

RNA

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14
Q

what are the differences between a bacteriophage and a virus?

A

bacteriophage targets bacteria, virus can really infect anything

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15
Q

what are the two groups of phages/viruses?

A

virulent or temperate

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16
Q

what is the life cycle of temperate phages?

A

the lytic or lysogenic cycle

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17
Q

what is the life cycle of virulent phages?

A

the lytic cycle

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18
Q

explain the lytic cycle

A

a reproductive cycle where a virus actively infects a host cell, uses the cell’s machinery to make copies of itself, and then bursts (lyses) the host cell to release the newly produced viruses

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19
Q

how does the lytic cycle relate to general and specific transduction?

A

essentially, generalized transduction can transfer any bacterial gene, while specialized transduction is limited to genes near the prophage integration site

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20
Q

explain the lysogenic cycle

A

dormant infection

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21
Q

how does the lysogenic cycle relate to general and specific transduction?

A

essentially, generalized transduction can transfer any bacterial gene, while specialized transduction is limited to genes near the prophage integration site

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22
Q

what components of host cells do phages/viruses steal to make new viral particles?

A

their replication system, proteins, RNA

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23
Q

what are some specialized proteins/enzymes that allow phages/viruses to make more of their genome or insert themselves in the host chromosome?

A

DNA polymerase, integrase, reverse transcriptase

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24
Q

what are the components of DNA?

A

phosphate group, deoxyribose, nucleotide

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25
what are the components of RNA?
phosphate group, ribose, nucleotide
26
what are the similarities and differences of RNA and DNA?
Uracil instead of Thymine, double vs single-stranded, deoxyribose vs ribose, storage vs protein creation
27
what is the principle behind DNA compaction?
supercoiling
28
what proteins control compaction in prokaryotes? specifically in DNA looping and coiling.
scaffolding proteins
29
what is eukaryote DNA structure at the primary level?
double-stranded DNA
30
what is eukaryote DNA structure at the secondary level?
nucleosomes
31
what is eukaryote DNA structure at the tertiary level?
30nm fibers -> 300nm loops -> 250nm fiber -> chromosome
32
what are the nine proteins that make up a nucleosome?
1 H1, 2 each of H2A, H2B, H3, and H4.
33
what role do the tails play in the nucleosome?
the tails pull them around
34
how do nucleosomes influence DNA compaction?
the tails allow them to pull the nucleosome in or out to condense or loosen
35
what is euchromatin?
lots of genes, few repetitive sequences, dynamic
36
what is heterochromatin?
few genes, many repetitive sequences, static, always condensed
37
is euchromatin dynamic or static?
dynamic
38
what are the defining features of centromeres?
heterochromatin, holds sister chromatids together
39
what are the defining features of telomeres?
heterochromatin, age bcs ERP, protected via telomerase and t loop
40
what is the biological role of a centromere?
to hold the sister chromatids together and be an anchor for kinetochores
41
what is the biological role of a telomere?
to protect the ends of our genome
42
what mechanisms protect telomeres?
telomerase and T Loop
43
how do telomeres relate to cellular aging?
they protect the ends of our DNA. new sequences are added by telomerase
44
what are the three modes of DNA replication?
theta, rolling circle, linear
45
what is theta replication?
prokaryotic, one replication bubble, one replicon, oriC sequence initiates, bidirectional
46
what is rolling circle replication?
prokaryotic, unidirectional, during conjugation, oriT, ff, DNA is cut, strand is pulled off and into another organism to become double-stranded
47
what is linear replication?
theta replication with multiple replication bubbles and in eukaryotes
48
new DNA strand synthesis occurs in what direction?
5' to 3'
49
what does topoisomerase have to do with catenation and torsion?
topoisomerase can uncatenate molecules and reduce torsion
50
explain what DNA polymerase I does
it eats away the RNA primers and replaces them with DNA
51
explain what DNA polymerase III does
main workhorse of replication: requires a primer to initiate synthesis, has 5' to 3' polymerization activity, has 3' to 5' exonuclease activity for repair, is very fast bcs of clamplike structure
52
what are initiator proteins?
allows the replication bubble to remain open
53
what are single-stranded binding proteins?
they keep the replication bubble open
54
what is helicase?
helicase is like a wedge that removes torsion
55
what is gyrase?
gyrase untwists the DNA strand for helicase to wedge in
56
what is RNA primase?
it places the RNA primer on the template strand
57
what is DNA ligase?
it fixes free DNA ends, which seals the covalent bond between the 3' OH group and 5' PO4
58
what do RNA primers do?
they show DNA polymerase III where to start adding base pairs
59
how are RNA primers removed and repaired during DNA synthesis?
DNA polymerase I will eat the primers and and replace with DNA
60
what does fidelity mean, in regards to DNA synthesis?
how accurate it is at adding the correct base pairs
61
what is "end replication problem?"
when a piece of single-stranded DNA is left over at telometric ends
62
is end replication problem a problem in prokaryotes?
no, because it is circular
63
3 levels of replication regulation
nucleotide selection by polymerase, DNA proofreading (pacman style), mismatch repair
64
phases of DNA replication
initiation and elongation
65
what is catenation?
tangles molecules
66
what is torsion?
the tension that arises from the twists and catenation
67
in what manner does DNA replicate?
semi-conservative