Exam 4 Flashcards
(60 cards)
Phylogeny
Establish an evolutionary history
Carlaus Linnaeus
2 kingdom system: plantae and animalia
Carl Woese
3 domain system (eukarya, bacteria, archaea) based on variation in cellular composition and rRNA sequences
Prokaryote, no peptidoglycan, branched carbon chains, lacking rRNA loop and Arm of tRNA
Archaea
Prokaryotic, peptidoglycan, straight carbon chains ESTER linked, rRNA loop and arm of tRNA present
Bacteria
Eukaryotic, straight carbon chains Ester linked, no rRNA loop, Arm of tRNA present
Eukarya
16 rRNA gene
Molecular tool to determine phylogeny and group organisms into taxa
Protoebacteria
Largest and most diverse phylum of GRAM-NEGATIVES, includes purple a oxygen Uc phototrophs
Proteobacteria classes
Alpha, beta, gamma, delta, epsilon
Proteobacteria class: alpha
Unusual morphologies
Human pathogens genus: Rickettsia
Ecologically significant genus: bradyrhizobium, rhizobium, nitrobacter, agrobacterium
Distinctive features genus: caulobacter & hyphomicrobium
Proteobacteria class: Beta
Utilize nutrients diffusing from areas of decomposition
Human pathogens genus: bordetella, neisseria
Ecologically significant genus: thiobacillus
Distinctive features genus: Shaerotillus
Proteobacteria class: Gamma
Largest class; greatest variety of physiology; includes enteric bacteria
Non enteric bacteria (gamma class)
Human pathogens genus: francisella, pseudomonas, vibrio
Ecologically significant genus: Beggiatoa, azotobacter & azomonas, thiomargarita, pseudomonas
Distinctive features: pseudomonas
Enterobacteriales or Entrics (gamma class)
Facultative anaerobic bacilli; peritrichous flagella possible; common in animal microbiota
Protoebacteria class: delta
Some predatory to other bacteria
Ecologically significant: desulfovibrio
Distinctive features: Bdelovibrio, myxococcus
Preteobacteria class: epsilon
Microaerophilic flagellated helical or vibrio cells
Human pathogens: campylobacter, helicobacter
Cyanobacteria
Gram negatives, large, diverse phylum unicellular or filamentous morphology; gliding motility or gas vacuoles; fix nitrogen and photosynthetic
Spirochetes
Gram negative, coiled morphology; axial filaments
Chlamydiae
Gram negatives, no PTG in cell wall; intracellular with very complex life cycle
Human pathogen: chlamydia, chlamydophila
Gram positive bacteria phyla
Firmicutes (low C + G) - bacteria w/o cell walls and endospore formers
Actinobacteria (high C + G) - acid fast bacteria and actinomycetes
Archaea
Most ecologically diverse of the three domains. Psychrophiles and hyperthermophiles, halophiles, acidophiles, methanogens. Most abundant in moderate habitats
Crenarchaeota
Widest range of temperature, hyperthermophiles, mesopholes, psychrophiles
Thaumarchaeota
Mesophillic heterotrophs and sulfur oxidizers; ammonia oxidizers
Euryarchaeota
Shows the greatest range of metabolism; methanogens, halophiles, some thermophiles